Genome-wide analysis of NAC transcription factors and their response to abiotic stress in celery (Apium graveolens L.)

Aida, 1997, Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant, Plant Cell, 9, 841, 10.1105/tpc.9.6.841

Balazadeh, 2010, A gene regulatory network controlled by the NAC transcription factor ANAC092/AtNAC2/ORE1 during salt-promoted senescence, Plant J., 62, 250, 10.1111/j.1365-313X.2010.04151.x

Buchanan-Wollaston, 2005, Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis, Plant J., 42, 567, 10.1111/j.1365-313X.2005.02399.x

Chen, 2018, Overexpression of a predominantly root-expressed NAC transcription factor in wheat roots enhances root length, biomass and drought tolerance, Plant Cell Rep., 37, 225, 10.1007/s00299-017-2224-y

Christianson, 2010, ATAF NAC transcription factors: regulators of plant stress signaling, Plant Signal. Behav., 5, 428, 10.4161/psb.5.4.10847

Diao, 2018, Genome-wide analyses of the NAC transcription factor gene family in pepper (Capsicum annuum L.): chromosome location, phylogeny, structure, expression patterns, cis-elements in the promoter, and interaction network, Int. J. Mol. Sci., 19, E1028, 10.3390/ijms19041028

Donze, 2014, Turnip crinkle virus coat protein inhibits the basal immune response to virus invasion in Arabidopsis by binding to the NAC transcription factor TIP, Virology, 449, 207, 10.1016/j.virol.2013.11.018

Duval, 2002, Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily, Plant Mol. Biol., 50, 237, 10.1023/A:1016028530943

Fang, 2008, Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice, Mol. Genet. Genomics, 280, 547, 10.1007/s00438-008-0386-6

Fujita, 2004, A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway, Plant J., 39, 863, 10.1111/j.1365-313X.2004.02171.x

Gao, 2018, A NAC transcription factor, NOR-like1, is a new positive regulator of tomato fruit ripening, Hortic. Res., 5, 75, 10.1038/s41438-018-0111-5

Ha, 2014, Genome-wide identification and expression analysis of the CaNAC family members in chickpea during development, dehydration and ABA treatments, PLoS One, 9, 10.1371/journal.pone.0114107

Hao, 2011, Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants, Plant J., 68, 302, 10.1111/j.1365-313X.2011.04687.x

He, 2005, AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development, Plant J., 44, 903, 10.1111/j.1365-313X.2005.02575.x

Hong, 2016, Overexpression of a stress-responsive NAC transcription factor gene ONAC022 improves drought and salt tolerance in rice, Front. Plant Sci., 7, 4, 10.3389/fpls.2016.00004

Hu, 2015, Genome-wide identification and expression analysis of the NAC transcription factor family in Cassava, PLoS One, 10, 10.1371/journal.pone.0136993

Jiang, 2016, Phylogenetic evolutionand expression analysis of NAC gene family in tomato (Solanum lycopersicum), Mol. Plant Breed., 14, 1948

Kamranfar, 2018, Transcription factor RD26 is a key regulator of metabolic reprogramming during dark-induced senescence, New Phytol., 218, 1543, 10.1111/nph.15127

Kikuchi, 2000, Molecular analysis of the NAC gene family in rice, Mol. Gen. Genet., 262, 1047, 10.1007/PL00008647

Knight, 2001, Abiotic stress signalling pathways: specificity and cross-talk, Trends Plant Sci., 6, 262, 10.1016/S1360-1385(01)01946-X

Kou, 2014, Molecular characterization and expression analysis of NAC family transcription factors in tomato, Plant Mol. Biol. Rep., 32, 501, 10.1007/s11105-013-0655-3

Kumar, 2016, MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets, Mol. Biol. Evol., 33, 1870, 10.1093/molbev/msw054

Le, 2011, Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress, DNA Res., 18, 263, 10.1093/dnares/dsr015

Li, 2018, Advances in the research of celery, an important Apiaceae vegetable crop, Crit. Rev. Biotechnol., 38, 172, 10.1080/07388551.2017.1312275

Li, 2014, Identification of SSRs and differentially expressed genes in two cultivars of celery (Apium graveolens L.) by deep transcriptome sequencing, Hortic. Res., 1, 10, 10.1038/hortres.2014.10

Liu, 2019, Genome-wide analysis of the NAC transcription factor family in Tartary buckwheat (Fagopyrum tataricum), BMC Genomics, 20, 113, 10.1186/s12864-019-5500-0

Liu, 2018, Molecular characterization of a stress-induced NAC gene, GhSNAC3, from Gossypium hirsutum, J. Genet., 97, 539, 10.1007/s12041-018-0944-6

Lu, 2012, A maize stress-responsive NAC transcription factor, ZmSNAC1, confers enhanced tolerance to dehydration in transgenic Arabidopsis, Plant Cell Rep., 31, 1701, 10.1007/s00299-012-1284-2

Meng, 2007, Molecular cloning, sequence characterization and tissue-specific expression of six NAC-like genes in soybean (Glycine max (L.) Merr.), J. Plant Physiol., 164, 1002, 10.1016/j.jplph.2006.05.019

Munns, 2005, Genes and salt tolerance: bringing them together, New Phytol., 167, 645, 10.1111/j.1469-8137.2005.01487.x

Olsen, 2005, NAC transcription factors: structurally distinct, functionally diverse, Trends Plant Sci., 10, 79, 10.1016/j.tplants.2004.12.010

Ooka, 2003, Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana, DNA Res., 10, 239, 10.1093/dnares/10.6.239

Pfaffl, 2001, A new mathematical model for relative quantification in real-time RT–PCR, Nucleic Acids Res., 29, e45, 10.1093/nar/29.9.e45

Puranik, 2012, NAC proteins: regulation and role in stress tolerance, Trends Plant Sci., 17, 369, 10.1016/j.tplants.2012.02.004

Rhee, 2003, The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community, Nucleic Acids Res., 31, 224, 10.1093/nar/gkg076

Seo, 2010, Proteolytic processing of an Arabidopsis membrane-bound NAC transcription factor is triggered by cold-induced changes in membrane fluidity, Biochem. J., 427, 359, 10.1042/BJ20091762

Thompson, 1994, Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673

Wang, 2018, CsATAF1 positively regulates drought stress tolerance by an ABA-dependent pathway and by promoting ROS scavenging in Cucumber, Plant Cell Physiol., 59, 930, 10.1093/pcp/pcy030

Wang, 2009, The Arabidopsis ATAF1, a NAC transcription factor, is a negative regulator of defense responses against necrotrophic fungal and bacterial pathogens, Mol. Plant Microbe Interact., 22, 1227, 10.1094/MPMI-22-10-1227

Wu, 2018, The SlNAC8 gene of the halophyte suaeda liaotungensis enhances drought and salt stress tolerance in transgenic Arabidopsis thaliana, Gene, 662, 10, 10.1016/j.gene.2018.04.012

Wu, 2009, Dual function of Arabidopsis ATAF1 in abiotic and biotic stress responses, Cell Res., 19, 1279, 10.1038/cr.2009.108

Yamada, 2010, Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides, J. Biol. Chem., 285, 1138, 10.1074/jbc.M109.054288

Yu, 2016, CarNAC4, a NAC-type chickpea transcription factor conferring enhanced drought and salt stress tolerances in Arabidopsis, Plant Cell Rep., 35, 613, 10.1007/s00299-015-1907-5

Zhou, 2014, Arabidopsis NAC domain proteins, VND1 to VND5, are transcriptional regulators of secondary wall biosynthesis in vessels, PLoS One, 9, 10.1371/journal.pone.0105726

Zhu, 2017, Constituents from Apium graveolens and their anti-inflammatory effects, J. Asian Nat. Prod. Res., 19, 1079, 10.1080/10286020.2017.1381687