Genome-wide analysis and identification of stress-responsive genes of the NAM–ATAF1,2–CUC2 transcription factor family in apple
Tóm tắt
Từ khóa
Tài liệu tham khảo
Olsen, 2005, NAC transcription factors: structurally distinct, functionally diverse, Trends Plant Sci., 10, 79, 10.1016/j.tplants.2004.12.010
Puranik, 2012, NAC proteins: regulation and role in stress tolerance, Trends Plant Sci., 17, 369, 10.1016/j.tplants.2012.02.004
Jensen, 2010, The Arabidopsis thaliana NAC transcription factor family: structure–function relationships and determinants of ANAC019 stress signaling, Biochem. J., 426, 183, 10.1042/BJ20091234
Chen, 2011, A structural view of the conserved domain of rice stress-responsive NAC1, Protein Cell, 2, 55, 10.1007/s13238-011-1010-9
Fang, 2008, Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice, Mol. Genet. Genomics, 280, 535, 10.1007/s00438-008-0386-6
Hibara, 2003, CUC1 gene activates the expression of SAM-related genes to induce adventitious shoot formation, Plant J., 36, 687, 10.1046/j.1365-313X.2003.01911.x
Sablowski, 1998, A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA, Cell, 92, 93, 10.1016/S0092-8674(00)80902-2
Kim, 2007, A membrane-associated NAC transcription factor regulates salt-responsive flowering via FLOWERING LOCUS T in Arabidopsis, Planta, 226, 647, 10.1007/s00425-007-0513-3
Yoo, 2007, Control of flowering time and cold response by a NAC-domain protein in Arabidopsis, PLoS One, 2, e642, 10.1371/journal.pone.0000642
Duval, 2002, Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily, Plant Mol. Biol., 50, 237, 10.1023/A:1016028530943
Fujita, 2004, A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway, Plant J., 39, 863, 10.1111/j.1365-313X.2004.02171.x
Li, 2012, Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa, Proc. Natl. Acad. Sci. U. S. A., 109, 14699, 10.1073/pnas.1212977109
Lu, 2007, A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis, Plant Mol. Biol., 63, 289, 10.1007/s11103-006-9089-8
Kim, 2008, A membrane-bound NAC transcription factor NTL8 regulates gibberellic acid-mediated salt signaling in Arabidopsis seed germination, Plant J., 55, 77, 10.1111/j.1365-313X.2008.03493.x
Nakashima, 2012, NAC transcription factors in plant abiotic stress responses, Biochim. Biophys. Acta, 1819, 97, 10.1016/j.bbagrm.2011.10.005
Tran, 2004, Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought responsive cis-element in the early responsive to dehydration stress 1 promoter, Plant Cell, 16, 2481, 10.1105/tpc.104.022699
Bu, 2008, Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses, Cell Res., 18, 756, 10.1038/cr.2008.53
Hu, 2006, Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice, Proc. Natl. Acad. Sci. U. S. A., 103, 12987, 10.1073/pnas.0604882103
Nakashima, 2007, Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice, Plant J., 51, 617, 10.1111/j.1365-313X.2007.03168.x
Hu, 2008, Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice, Plant Mol. Biol., 67, 169, 10.1007/s11103-008-9309-5
Yokotani, 2009, Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis, Planta, 229, 1065, 10.1007/s00425-009-0895-5
Jeong, 2010, Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions, Plant Physiol., 153, 185, 10.1104/pp.110.154773
Pinheiro, 2009, Complete inventory of soybean NAC transcription factors: sequence conservation and expression analysis uncover their distinct roles in stress response, Gene, 444, 10, 10.1016/j.gene.2009.05.012
Le, 2011, Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress, DNA Res., 18, 263, 10.1093/dnares/dsr015
Velasco, 2010, The genome of the domesticated apple (Malus × domestica Borkh.), Nat. Genet., 42, 833, 10.1038/ng.654
Li, 2011, Genome-wide analysis of the RING finger gene family in apple, Mol. Genet. Genomics, 286, 81, 10.1007/s00438-011-0625-0
Giorno, 2012, Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis, BMC Genomics, 13, 639, 10.1186/1471-2164-13-639
Liang, 2012, Genome-wide identification and expression profiling of dehydrin gene family in Malus domestica, Mol. Biol. Rep., 39, 10759, 10.1007/s11033-012-1968-2
Zhao, 2012, Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress, Mol. Genet. Genomics, 287, 423, 10.1007/s00438-012-0687-7
Mitsuda, 2008, NAC transcription factors NST1 and NST3 regulate pod shattering in a partially redundant manner by promoting secondary wall formation after the establishment of tissue identity, Plant J., 56, 768, 10.1111/j.1365-313X.2008.03633.x
Yamaguchi, 2008, Vascular-related NACDOMAIN7 is involved in the differentiation of all types of xylem vessels in Arabidopsis roots and shoots, Plant J., 55, 652, 10.1111/j.1365-313X.2008.03533.x
Kim, 2006, Exploring membrane-associated NAC transcription factors in Arabidopsis: implications for membrane biology in genome regulation, Nucleic Acids Res., 35, 203, 10.1093/nar/gkl1068
Hu, 2010, Comprehensive analysis of NAC domain transcription factor gene family in Populus trichocarpa, BMC Plant Biol., 10, 145, 10.1186/1471-2229-10-145
Zhang, 2013, Apple gene function and gene family database: an integrated bioinformatics database for apple research, Plant Growth Regul., 10.1007/s10725-013-9787-6
Bateman, 2002, The pfam protein families database, Nucleic Acids Res., 30, 276, 10.1093/nar/30.1.276
Letunic, 2012, SMART 7: recent updates to the protein domain, Nucleic Acids Res., 40, 302, 10.1093/nar/gkr931
Bailey, 2006, MEME: discovering and analyzing DNA and protein sequence motifs, Nucleic Acids Res., 34, W369, 10.1093/nar/gkl198