Genetic variability within the Polish tomato torrado virus Kra isolate caused by deletions in the 3′-untranslated region of genomic RNA1

Virus Research - Tập 185 - Trang 47-52 - 2014
Marta Budziszewska1, Przemysław Wieczorek1, Yanping Zhang2, Dmitrij Frishman2,3, Aleksandra Obrępalska-Stęplowska1
1Interdepartmental Laboratory of Molecular Biology, Institute of Plant Protection – National Research Institute, W. Wegorka 20, 60-318 Poznań, Poland
2Department of Genome Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, TU Muenchen Maximus-von-Imhof-Forum 3, 85354 Freising, Germany
3Helmholtz Center Munich – German Research Center for Environmental Health (GmbH), Institute of Bioinformatics and Systems Biology, Ingolstaaedter Landstraße 1, D-85764 Neuherberg, Germany

Tài liệu tham khảo

Alejska, 2001, How RNA viruses exchange their genetic material, Acta Biochim. Pol., 48, 391, 10.18388/abp.2001_3924 Alfaro-Fernández, 2009, First report of Tomato torrado virus infecting tomato in Hungary, Plant Dis., 93, 554, 10.1094/PDIS-93-5-0554C Alfaro-Fernández, 2010, Molecular variability of Spanish and Hungarian isolates of Tomato torrado virus, Plant Pathol., 59, 785, 10.1111/j.1365-3059.2010.02280.x Alvarez, 2005, Role of RNA structures present at the 3′UTR of dengue virus on translation, RNA synthesis, and viral replication, Virology, 339, 200, 10.1016/j.virol.2005.06.009 Amari, 2008, Tomato torrado virus is transmitted by Bemisia tabaci and infects pepper and eggplant in addition to tomato, Plant Dis., 92, 1139, 10.1094/PDIS-92-7-1139A Bester, 2012, Real-time RT-PCR high-resolution melting curve analysis and multiplex RT-PCR to detect and differentiate grapevine leafroll-associated virus 3 variant groups I, II, III and VI, Virol. J., 9, 219, 10.1186/1743-422X-9-219 Budziszewska, 2008, The nucleotide sequence of a Polish isolate of Tomato torrado virus, Virus Genes, 37, 400, 10.1007/s11262-008-0284-3 Chen, 2013, Maintaining the structural integrity of the bamboo mosaic virus 3′ untranslated region is necessary for retaining the catalytic constant for minus-strand RNA synthesis, Virol. J., 10, 208, 10.1186/1743-422X-10-208 Chen, 2013, Chikungunya virus 3′ untranslated region: adaptation to mosquitoes and a population bottleneck as major evolutionary forces, PLoS Pathog., 9, e1003591, 10.1371/journal.ppat.1003591 Dreher, 1999, Functions of the 3′-untranslated regions of positive strand RNA viral genomes, Annu. Rev. Phytopathol., 37, 151, 10.1146/annurev.phyto.37.1.151 Gambley, 2010, First report of Tomato torrado virus on tomato from Australia, Plant Dis., 94, 486, 10.1094/PDIS-94-4-0486A Garcia-Arenal, 2003, Variation and evolution of plant virus populations, Int. Microbiol., 6, 225, 10.1007/s10123-003-0142-z Herrera-Vasquez, 2009, First report of Tomato torrado virus infecting tomato in single and mixed infections with Cucumber mosaic virus in Panama, Plant Dis., 93, 198, 10.1094/PDIS-93-2-0198A Pospieszny, 2010, Biological and molecular characterization of Polish isolates of Tomato torrado virus, J. Phytopathol., 158, 56, 10.1111/j.1439-0434.2009.01563.x Pospieszny, 2007, The first report of Tomato torrado virus in Poland, Plant Dis., 91, 1364, 10.1094/PDIS-91-10-1364A Pospieszny, 2012, Using the IC real-time RT-PCR technique for the detection of Tomato torrado virus (ToTV) in tomato seedling from infected seeds, Prog. Plant Prot., 52, 515 Pospieszny, 2008, Tomato torrado virus - new pathogen of tomato, Progr Plant Protect., 48, 1085 Proutski, 1999, Biological consequences of deletions within the 3′-untranslated region of flaviviruses may be due to rearrangements of RNA secondary structure, Virus Res., 64, 107, 10.1016/S0168-1702(99)00079-9 Sanfaçon, 2009, Secoviridae: a proposed family of plant viruses within the order Picornavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus and Sadwavirus, and the proposed genus Torradovirus, Arch. Virol., 154, 899, 10.1007/s00705-009-0367-z Verbeek, 2007, Identification and characterization of Tomato torrado virus, a new picorna-like virus from tomato, Arch. Virol., 152, 881, 10.1007/s00705-006-0917-6 Wang, 2012, A 205-nucleotide deletion in the 3′ untranslated region of avian leukosis virus subgroup J, currently emergent in China, contributes to its pathogenicity, J. Virol., 86, 12849, 10.1128/JVI.01113-12 Wieczorek, 2010, Using of HRM technique for identification of single changes in 3′UTR RNA of Polish isolates of ToTV virus, Prog. Plant Prot., 50