Genetic variability, heritability, genetic advance and phylogenetic relationship between rice tungro virus resistant and susceptible genotypes revealed by morphological traits and SSR markers

Wennberg, 2014, Food and Agriculture Organization of the United Nations Kabir, 2016, Rice vision for Bangladesh: 2050 and beyond, Bangladesh Rice J., 19, 1, 10.3329/brj.v19i2.28160 Gour, 2004, 2, 381 Dai, 2009, Genetic engineering of rice to resist rice tungro disease, Vitr. Cell. Dev. Biol. - Plant., 45, 517, 10.1007/s11627-009-9241-7 Bunawan, 2016, Set potential determination for rice tungro spherical virus (RTSV) detection using chronoamperometry measurement, Procedia Chem., 20, 121, 10.1016/j.proche.2016.07.022 Hibino, 1983, Transmission of two rice tungro-associated viruses and rice waika virus from doubly or singly infected source plants by leafhopper vectors, Plant Dis., 67, 774, 10.1094/PD-67-774 Latif, 2013, Inheritance studies of SSR and ISSR molecular markers and phylogenetic relationship of rice genotypes resistant to tungro virus, Comptes Rendus - Biol., 336, 125, 10.1016/j.crvi.2012.12.002 BRRI (Bangladesh Rice Research Institute) Annual Report, 2018-2019. pp: 286-287. Moose, 2008, Molecular plant breeding as the foundation for 21st century crop improvement, Plant Physiol., 147, 969, 10.1104/pp.108.118232 Mazid, 2013, Agro-morphological characterization and assessment of variability, heritability, genetic advance and divergence in bacterial blight resistant rice genotypes, South African J. Bot., 149, 432 Latif, 2011, Microsatellite and minisatellite markers based DNA fingerprinting and genetic diversity of blast and ufra resistant genotypes, Comptes Rendus - Biol., 334, 282, 10.1016/j.crvi.2011.02.003 Williams, 1990, DNA polymorphisms amplified by arbitrary primers are useful as genetic markers, Nucleic Acids Res., 18, 6531, 10.1093/nar/18.22.6531 Vos, 1995, AFLP: a new technique for DNA fingerprinting, Nucleic Acids Res., 23, 4407, 10.1093/nar/23.21.4407 Li, 2001, Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica, Theor. Appl. Genet., 103, 455, 10.1007/s001220100570 Monfared, 2018, Assessment of genetic diversity in Salvadora persica L. based on inter simple sequence repeat (ISSR) genetic marker, J. Genet. Eng. Biotechnol., 16, 661, 10.1016/j.jgeb.2018.04.005 Pathaichindachote, 2019, Genetic diversity and allelic frequency of selected thai and exotic rice germplasm using SSR markers, Rice Sci., 26, 393, 10.1016/j.rsci.2018.11.002 Shehata, 2009, Application of simple sequence repeat (SSR) markers for molecular diversity and heterozygosity analysis in maize inbred lines, Saudi J. Biol. Sci., 16, 57, 10.1016/j.sjbs.2009.10.001 Li, 2013, Evaluation of genetic diversity of sichuan common wheat landraces in china by SSR markers, J. Integr. Agric., 12, 1501, 10.1016/S2095-3119(13)60418-9 Song, 2016, SSR analysis of genetic diversity among 192 diploid potato cultivars, Hortic. Plant J., 2, 163, 10.1016/j.hpj.2016.08.006 IRRI, 2013 Ferdous, 2012, A quick DNA extraction protocol: without liquid nitrogen in ambient temperature, African J. Biotechnol., 11, 6956 Burton, 1951, Quantitative inheritance in pearl millet (Pennisetum glaucum), Agron. J., 43, 409, 10.2134/agronj1951.00021962004300090001x Burton, 1953, Estimating heritability in tall fescue (Festuca arundinacea) from replicated clonal material, Agron. J., 45, 478, 10.2134/agronj1953.00021962004500100005x Johnson, 1955, Estimates of genetic and environmental variability in soybeans, Agron. J., 47, 314, 10.2134/agronj1955.00021962004700070009x Sivasubramanian, 1973, Heterosis and inbreeding depression in rice, Adv. Agron., 47, 85 Robinson, 1949, Estimates of heritability and the degree of dominance in corn, Agron. J., 41, 353, 10.2134/agronj1949.00021962004100080005x Encabo, 2009, Suppression of two tungro viruses in rice by separable traits originating from cultivar utri merah, Mol. Plant-Microbe Interact., 22, 1268, 10.1094/MPMI-22-10-1268 Lee, 2010, Single nucleotide polymorphisms in a gene for translation initiation factor (eIF4G) of rice (Oryza sativa) associated with resistance to rice tungro spherical virus, Mol. Plant-Microbe Interact., 23, 29, 10.1094/MPMI-23-1-0029 Ladja, 2016, Responses of tungro resistant rice varieties and donor parents against five tungro virus isolates from Indonesia, J. Int. Soc. Southeast Asian Agric. Sci., 22, 18 Kumar, 2019, Assessment of resistance to rice tungro disease in popular rice varieties in India by introgression of a transgene against rice tungro bacilliform virus, Arch. Virol., 164, 1005, 10.1007/s00705-019-04159-3 Paramsivam, 1996, Heterosis and combining ability for grain characters in rice, Madras Agric. J., 83, 110, 10.29321/MAJ.10.A00981 Chaudhury, 1998, Genetic variability, correlation and path coefficient analysis in deep water rice, Ann. Agric. Res., 19, 120 Hossain, 2007, Molecular characterization and genetic diversity in fine grain and aromatic landraces of rice (Oryza sativa L.) using microsatellite markers, Bangladesh J. Plant Breed. Genet., 20, 1, 10.3329/bjpbg.v20i2.17028 Botstein, 1980, Construction of a genetic linkage map in man using restriction fragment length polymorphisms, Am. J. Hum. Genet., 32, 314 Singh, 2013, Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties, PLoS One., 10.1371/journal.pone.0084136 Sneath, 1962, Numerical taxonomy, Nature, 193, 855, 10.1038/193855a0 Wu, 2013, Analysis on genetic diversification and heterosis in autotetraploid rice, Springerplus., 2, 439, 10.1186/2193-1801-2-439