Genetic variability and phylogenetic analysis among strains of deformed wing virus infesting honey bees and other organisms

Abd-El-Samie, 2017, First detection of deformed wing and kakugo viruses in honeybees (Apis mellifera L.) in Egypt by real time-polymerase chain reaction (RT-PCR), Afr. J. Biotechnol., 16, 738, 10.5897/AJB2016.15557 Abou-Shaara, 2019, Utilizing bioinformatics to detect genetic similarities between African honey bee subspecies, J. Genet., 98, 96, 10.1007/s12041-019-1145-7 Abou-Shaara, 2019, Highlights on the genetic relationships between some honey bee viruses using various techniques, J. Appl. Biotechnol. Rep., 6, 15, 10.29252/JABR.06.01.03 Abou-Shaara, 2019, Using mitochondrial DNA similarity percentages to analyze the maternal source of hybrid bees from two honey bee subspecies, Sci. Pap. Anim. Sci. Biotechnol., 52, 32 Abou-Shaara, 2018, Calendar for the prevalence of honey bee diseases, with studying the role of some materials to control Nosema, Kor. J. Appl. Entomol., 57, 87 Abou-Shaara, 2020, Using simple statistics to compare genetic sequences, Thail. Statist., 18, 373 Abou-Shaara, 2020, A bioinformatics study to detect the genetic characteristics of Vespa hornets (Hymenoptera: Vespidae), J. Entomol. Res. Soc., 22 Abou-Shaara, H.F., Abbas, A.S., AL-Kahtani, S.N., Taha, E.K.A., Khan, K.A., Jamal, Z.A., Alotaibi, M.A., Ahmad, B., Khan, N.A., Qamer, S. and Anjum, S.I. 2021. Exploring the non-coding regions in the mtDNA of some honey bee species and subspecies. Saudi J. Biol. Sci. 28, 204–209. https://doi.org/10.1016/j.sjbs.2020.09.047. Aizen, 2009, The global stock of domesticated honey bees is growing slower than agricultural demand for pollination, Curr. Biol., 19, 915, 10.1016/j.cub.2009.03.071 Al-Ghamdi, 2016, Current status of beekeeping in the Arabian countries and urgent needs for its development inferred from a soci-economic analysis, Asian J. Agri. Res, 10, 87 Allen, 1996, The incidence and world distribution of honeybee viruses, Bee World, 77, 141, 10.1080/0005772X.1996.11099306 Bacandritsos, 2010, Sudden deaths and colony population decline in Greek honey bee colonies, J. Invert. Pathol., 105, 335, 10.1016/j.jip.2010.08.004 Bailey, 1991 Barroso-Arévalo, 2019, Nucleotide sequence variations may be associated with virulence of deformed wing virus, Apidologie, 50, 482, 10.1007/s13592-019-00660-5 Berényi, 2007, Phylogenetic analysis of deformed wing virus genotypes from diverse geographic origins indicates recent global distribution of the virus, Appl. Environ. Microbiol., 73, 3605, 10.1128/AEM.00696-07 Bowen-Walker, 1999, The transmission of Deformed Wing Virus between honeybees (Apis mellifera L.) by ectoparasitic mite Varroa jacobsoni Oud, J. Invertebr. Pathol., 73, 101, 10.1006/jipa.1998.4807 Brettell, 2017, A comparison of deformed wing virus in deformed and asymptomatic honey bees, Insects, 8, 28, 10.3390/insects8010028 Calderon, 2003, Presence of deformed wing virus and Kashmir bee virus in Africanized honey bee colonies in Costa Rica infested with Varroa destructor, Bee World, 84, 112, 10.1080/0005772X.2003.11099586 Chen, 2004, Detection of deformed wing virus infection in honey bees, Apis mellifera L., in the United States, Am. Bee J., 144, 557 Chen, 2005, Quantitative real-time reverse transcription-PCR analysis of deformed wing virus infection in the honeybee (Apis mellifera L.), Appl. Environ. Microbiol., 71, 436, 10.1128/AEM.71.1.436-441.2005 Clement, 2002, TCS: estimating gene genealogies, Proc 16th Int Parallel Distrib Process Symp, 2, 184 Dainat, 2012, Dead or alive: deformed wing virus and Varroa destructor reduce the life span of winter honeybees, Appl. Environ. Microbiol., 78, 981, 10.1128/AEM.06537-11 Dalmon, 2017, Evidence for positive selection and recombination hotspots in Deformed wing virus (DWV), Sci. Rep., 7, 1, 10.1038/srep41045 De Miranda, 2010, Deformed wing virus, J. Invert Pathol., 103, S48, 10.1016/j.jip.2009.06.012 Desai, 2012, Reduction in deformed wing virus infection in larval and adult honey bees (Apis mellifera L.) by double-stranded RNA ingestion, Insect Mol. Biol., 21, 446, 10.1111/j.1365-2583.2012.01150.x Edgar, 2004, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Res., 32, 1792, 10.1093/nar/gkh340 Forzan, 2017, Detection of deformed wing virus in Vespa crabro, Bull. Insectol., 70, 261 Fu, 1993, Statistical tests of neutrality of mutations, Genetics, 133, 693, 10.1093/genetics/133.3.693 Gaetana, 2006, Molecular and biological characterization of deformed wing virus of honeybees (Apis mellifera L.), J. Virol., 80, 4998, 10.1128/JVI.80.10.4998-5009.2006 Genersch, 2006, Detection of deformed wing virus (DWV), a honey bee viral pathogen, in bumble bees (Bombus terrestris and Bombus pascuorum) with wing deformities, J. Invertebr. Pathol., 91, 61, 10.1016/j.jip.2005.10.002 Gisder, 2009, Deformed wing virus: replication and viral load in mites (Varroa destructor), J. Gen. Virol., 90, 463, 10.1099/vir.0.005579-0 Haddad, 2017, Distribution and variability of deformed wing virus of honeybees (Apis mellifera) in the Middle East and North Africa, Insect sci, 24, 103, 10.1111/1744-7917.12277 Highfield, 2009, Deformed wing virus implicated in overwintering honeybee colony losses, Appl. Environ. Microbiol., 75, 7212, 10.1128/AEM.02227-09 Hristov, 2020, Factors associated with honey bee colony losses: a mini-review, Vet. Sci., 7, 166, 10.3390/vetsci7040166 Jamnikar-Ciglenecki, 2019, Genetic diversity of deformed wing virus from Apis mellifera carnica (Hymenoptera: Apidae) and Varroa mite (Mesostigmata: Varroidae), J. Econ. Entomol., 112, 11, 10.1093/jee/toy312 Kovac, 1988, Lifespan of Apis mellifera Carnica Pollm. infested by Varroa jacobsoni in relation to season and extent of infestation, J. Apic. Res., 27, 230, 10.1080/00218839.1988.11100808 Krell R. 1996 Value-added products from beekeeping (No. 124). Food & Agriculture Org. Leigh, 2015, PopART: Full-feature software for haplotype network construction, Meth. Ecol. Evol., 6, 1110, 10.1111/2041-210X.12410 Leza, 2018, First detection of Vespa velutina nigrithorax (Hymenoptera: Vespidae) in the Balearic Islands (Western Mediterranean): a challenging study case, Biol. Inv., 20, 1643, 10.1007/s10530-017-1658-z Matheson, 2000, Managing risks in world trade in bees and bee products, Apiacta, 35, 1 Mazzei, 2018, First detection of replicative deformed wing virus (DWV) in Vespa velutina nigrithorax, Bull. Insectol., 71, 211 Morse, 2000, The value of honey bees as pollinators of U.S. crops in 2000, Bee Cul., 128, 2 Mutinelli, 2011, The spread of pathogens through trade in honey bees and their products (including queen bees and semen): overview and recent developments, Rev. Sci. Tech., 30, 257, 10.20506/rst.30.1.2033 Natsopoulou, 2017, The virulent, emerging genotype B of Deformed wing virus is closely linked to overwinter honeybee worker loss, Sci. Rep., 7, 1, 10.1038/s41598-017-05596-3 Neumann, 2010, Honey bee colony losses, J. Apic. Res., 49, 1, 10.3896/IBRA.1.49.1.01 Nordstrom, 2003, Distribution of deformed wing virus within honey bee (Apis mellifera) brood cells infested with the ectoparasitic mite Varroa destructor, Exp. Appl. Acarol., 29, 293, 10.1023/A:1025853731214 Posada-Florez, 2019, Deformed wing virus type A, a major honey bee pathogen, is vectored by the mite Varroa destructor in a non-propagative manner, Sci. Rep., 9, 1, 10.1038/s41598-019-47447-3 Prisco, 2011, Dynamics of persistent and acute deformed wing virus infections in honey bees, Apis mellifera, Viruses, 3, 2425, 10.3390/v3122425 Rozas, 2017, DnaSP 6: DNA sequence polymorphism analysis of large datasets, Mol. Biol. Evol., 34, 3299, 10.1093/molbev/msx248 Schittny, 2020, Honey bee virus transmission via hive products, Vet. Sci., 7, 96, 10.3390/vetsci7030096 Southwick, 1992, Estimating the economic value of honey bees (Hymenoptera: Apidae) as agricultural pollinators in the United States, J. Econ. Entomol., 85, 621, 10.1093/jee/85.3.621 Tajima, 1989, Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Genet., 123, 585, 10.1093/genetics/123.3.585 Tamura, 2013, MEGA6: molecular evolutionary genetics analysis version 6.0, Molecul. Biol. Evol., 30, 2725, 10.1093/molbev/mst197 Tentcheva, 2006, Comparative analysis of deformed wing virus (DWV) RNA in Apis mellifera and Varroa destructor, Apidologie, 37, 41, 10.1051/apido:2005057 vanEngelsdorp, 2009, Colony collapse disorder: A descriptive study, PLoS ONE, 4, 10.1371/journal.pone.0006481 Yue, 2005, RT-PCR analysis of deformed wing virus (DWV) in honey bees (Apis mellifera) and mites (Varroa destructor), J. Gen. Virol., 86, 3419, 10.1099/vir.0.81401-0