Genetic structure of pig breeds from Korea and China using microsatellite loci analysis1

Journal of Animal Science - Tập 83 Số 10 - Trang 2255-2263 - 2005
T. H. Kim1, Kwang Soo Kim2, Bong‐Hwan Choi1, Duhak Yoon1, Gul Won Jang1, K. T. Lee1, Ho Young Chung1, H. Y. Lee1, H. S. Park1, J. W. Lee1
1Animal Genomics and Bioinformatics Division, National Livestock Research Institute, RDA, Suwon, Gyeonggi 441-706, Republic of Korea and
2USDA-ARS, Corn Insects and Crop Genetics Research Unit, Genetics Laboratory, Iowa State University, Ames 50011

Tóm tắt

Từ khóa


Tài liệu tham khảo

1990, Categorical Data Analysis.

Alexander, 1996, Cloning and characterization of 414 polymorphic porcine microsatellites, Anim. Genet., 27, 137, 10.1111/j.1365-2052.1996.tb00941.x

Belkhir, K., P.Borsa, L.Chikhi, N.Raufaste, and F.Bonhomme 1996. GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier, France. Available: http://www.univ-montp2.fr/~genetix/genetix/genetix.htm. Accessed April 16, 2002.

Brown, 1994, Four new porcine polymorphic microsatellite loci (S0032, S0034, S0036, S0037), Anim. Genet., 25, 365, 10.1111/j.1365-2052.1994.tb00376.x

Cornuet, 1999, New methods employing multilocus genotypes to select or exclude populations as origins of individuals, Genetics, 153, 1989, 10.1093/genetics/153.4.1989

Efron, 1983, Estimating the error rate of a prediction rule: Improvement on cross-validation, J. Am. Stat. Assoc., 78, 316, 10.1080/01621459.1983.10477973

Ellegren, 1994, A primary linkage map of the porcine genome reveals a low rate of genetic recombination, Genetics, 137, 1089, 10.1093/genetics/137.4.1089

Fan, 2002, Genetic variation analysis within and among Chinese indigenous swine populations using microsatellite markers, Anim. Genet., 34, 465, 10.1046/j.0268-9146.2003.01057.x

Fang, 2005, The phylogeny of Chinese indigenous pig breeds inferred from microsatellite markers, Anim. Genet., 36, 7, 10.1111/j.1365-2052.2004.01234.x

Fredholm, 1993, Characterization of 24 porcine (dA-dC)n-(dT-dG)n microsatellites: Genotyping of unrelated animals from four breeds and linkage studies, Mamm. Genome, 4, 187, 10.1007/BF00417561

Giuffra, 2000, The origin of the domestic pig: Independent domestication and subsequent introgression, Genetics, 154, 1785, 10.1093/genetics/154.4.1785

Goudet, J. 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available: http://www.unil.ch/izea/softwares/fstat.html. Accessed February 6, 2005.

Guo, 1992, Performing the exact test of Hardy-Weinberg proportions for multiple alleles, Biometrics, 48, 361, 10.2307/2532296

Hoyheim, 1994, A highly polymorphic porcine dinucleotide repeat S0301 (BHT 12) at chromosome 4p15, Anim. Genet., 25, 432, 10.1111/j.1365-2052.1994.tb00539.x

Rothschild, 1998, Genetics aspects of domestication, common breeds and their origin, The Genetics of the Pig., 17

Kim, 2002, Genetic structure of Korean native pig using microsatellite markers, Kor. J. Genet., 24, 1

Kim, 2002, Phylogenetic relationships of Asian and European pig breeds determined by mitochondrial DNA D-loop sequence polymorphism, Anim. Genet., 33, 19, 10.1046/j.1365-2052.2002.00784.x

Kim, 2002, Assessment of genetic diversity of Korean native pig (Sus scrofa) using AFLP markers, Gen. Genet. Syst., 77, 361, 10.1266/ggs.77.361

Kimura, 1964, The number of alleles that can be maintained in a finite population, Genetics, 49, 725, 10.1093/genetics/49.4.725

Kimura, 1978, Stepwise mutation model and distribution of allelic frequencies in a finite population, Proc. Natl. Acad. Sci. USA, 75, 2868, 10.1073/pnas.75.6.2868

Koskinen, 2003, Individual assignment using microsatellite DNA reveals unambiguous breed identification in the domestic dog, Anim. Genet., 34, 297, 10.1046/j.1365-2052.2003.01005.x

Larson, 2005, Worldwide phylogeography of wild boar reveals multiple centers of pig domestication, Science, 307, 1618, 10.1126/science.1106927

Laval, 2000, Genetic diversity of eleven European pig breeds, Genet. Sel. Evol., 32, 187, 10.1186/1297-9686-32-2-187

Lemus-Flores, 2001, Genetic analysis of Mexican hairless pig populations, J. Anim. Sci., 79, 3021, 10.2527/2001.79123021x

Li, 2000, Analysis of diversity and genetic relationships between four Chinese indigenous pig breeds and one Australian commercial pig breed, Anim. Genet., 31, 322, 10.1046/j.1365-2052.2000.00649.x

Li, 2004, Genetic diversity analyses of 10 indigenous Chinese pig populations based on 20 microsatellites, J. Anim. Sci., 82, 368, 10.2527/2004.822368x

Martin-Burriel, 1999, Genetic diversity analysis of six Spanish native cattle breeds using microsatellites, Anim. Genet., 30, 177, 10.1046/j.1365-2052.1999.00437.x

Martinez, 2000, Genetic structure of the Iberian pig breed using microsatellites, Anim. Genet., 31, 295, 10.1046/j.1365-2052.2000.00645.x

Nei, 2000, Molecular Evolution and Phylogenetics.

Nei, 1983, Accuracy of estimated phylogenetic trees from molecular data, J. Mol. Evol., 19, 153, 10.1007/BF02300753

Okumura, 2001, Genetic relationship amongst the major non-coding regions of mitochondrial DNAs in wild boars and several breeds of domesticated pigs, Anim. Genet., 32, 139, 10.1046/j.1365-2052.2001.00757.x

1993, DISPAN: Genetic Distance and Phylogenetic Analysis.

Piry, 2004, GeneClass2: A Software for genetic assignment and first-generation migrant detection, J. Hered., 95, 536, 10.1093/jhered/esh074

Rannala, 1997, Detecting immigration by using multilocus genotypes, Proc. Natl. Acad. Sci. USA, 98, 9197, 10.1073/pnas.94.17.9197

Raymond, 1995, GENEPOP Version 3.1b. Population genetics software for exact tests and ecumenicism, J. Hered., 86, 248, 10.1093/oxfordjournals.jhered.a111573

Rice, 1989, Analyzing tables of statistical tests, Evolution, 43, 223, 10.1111/j.1558-5646.1989.tb04220.x

Robic, 1996, Porcine linkage and cytogenetic maps integrated by regional mapping of 100 microsatellites on somatic cell hybrid panel, Mamm. Genome, 7, 438, 10.1007/s003359900129

Rohrer, 1994, A microsatellite linkage map of the porcine genome, Genetics, 136, 231, 10.1093/genetics/136.1.231

Rousset, 1996, Equilibrium values of measures of population subdivision for stepwise mutation processes, Genetics, 142, 1357, 10.1093/genetics/142.4.1357

Saitou, 1987, The neighbour-joining method: A new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406

Sneath, 1973, Numerical Taxonomy.

Weir, 1984, Estimating F-statistics for the analysis of population structure, Evolution, 38, 1358

Yang, 2003, Genetic variation and relationships of eighteen Chinese indigenous pig breeds, Gen. Sel. Evol., 35, 657, 10.1186/1297-9686-35-7-657