Barral A, Pedral-Sampaio D, Grimaldi Junior G, Momen H, McMahon-Pratt D, Ribeiro de Jesus A, Almeida R, Badaro R, Barral-Netto M, Carvalho EM, et al: Leishmaniasis in Bahia, Brazil: evidence that Leishmania amazonensis produces a wide spectrum of clinical disease. The American Journal of Tropical Medicine and Hygiene. 1991, 44 (5): 536-546.
Barral A, Costa JM, Bittencourt AL, Barral-Netto M, Carvalho EM: Polar and subpolar diffuse cutaneous leishmaniasis in Brazil: clinical and immunopathologic aspects. Int J Dermatol. 1995, 34 (7): 474-479. 10.1111/j.1365-4362.1995.tb00613.x.
Costa JML, Cunha AK, Gama MEA, Saldanha ACR: Leishmaniose cutânea difusa: revisão. An Bras Derm. 1998, 73: 565–576-
Marsden PD: Mucocutaneous leishmaniasis. Bmj. 1990, 301 (6753): 656-657.
Miles MA, Povoa MM, de Souza AA, Lainson R, Shaw JJ: Some methods for the enzymic characterization of Latin-American Leishmania with particular reference to Leishmania mexicana amazonensis and subspecies of Leishmania hertigi. Transactions of the Royal Society of Tropical Medicine and Hygiene. 1980, 74 (2): 243-252. 10.1016/0035-9203(80)90253-9.
Tibayrenc M, Neubauer K, Barnabe C, Guerrini F, Skarecky D, Ayala FJ: Genetic characterization of six parasitic protozoa: parity between random-primer DNA typing and multilocus enzyme electrophoresis. Proceedings of the National Academy of Sciences,USA. 1993, 90 (4): 1335-1339. 10.1073/pnas.90.4.1335.
Jackson PR, Wohlhieter JA, Jackson JE, Sayles P, Diggs CL, Hockmeyer WT: Restriction endonuclease analysis of Leishmania kinetoplast DNA characterizes parasites responsible for visceral and cutaneous disease. The American Journal of Tropical Medicine and Hygiene. 1984, 33 (5): 808-819.
Macedo AM, Melo MN, Gomes RF, Pena SD: DNA fingerprints: a tool for identification and determination of the relationships between species and strains of Leishmania. Molecular and Biochemical Parasitology. 1992, 53 (1-2): 63-70. 10.1016/0166-6851(92)90007-7.
Williams JG, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV: DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 1990, 18 (22): 6531-6535. 10.1093/nar/18.22.6531.
Zietkiewicz E, Rafalski A, Labuda D: Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics. 1994, 20 (2): 176-183. 10.1006/geno.1994.1151.
Rubinsztein DC, Amos W, Leggo J, Goodburn S, Jain S, Li SH, Margolis RL, Ross CA, Ferguson-Smith MA: Microsatellite evolution--evidence for directionality and variation in rate between species. Nat Genet. 1995, 10 (3): 337-343. 10.1038/ng0795-337.
Gomes RF, Macedo AM, Pena SD, Melo MN: Leishmania (Viannia) braziliensis: genetic relationships between strains isolated from different areas of Brazil as revealed by DNA fingerprinting and RAPD. Experimental Parasitology. 1995, 80 (4): 681-687. 10.1006/expr.1995.1084.
Volpini AC, de Azeredo Passos VM, Romanha AJ: Attempt to differentiate Leishmania (Leishmania) amazonensis, L. (L.) chagasi, Leishmania (Viannia) braziliensis and L. (V.) guyanensis using the SSR-PCR technique. Parasitolology Research. 2001, 87 (12): 1056-1059.
Schriefer A, Schriefer AL, Goes-Neto A, Guimaraes LH, Carvalho LP, Almeida RP, Machado PR, Lessa HA, de Jesus AR, Riley LW, Carvalho EM: Multiclonal Leishmania braziliensis population structure and its clinical implication in a region of endemicity for American tegumentary leishmaniasis. Infect Immun. 2004, 72 (1): 508-514. 10.1128/IAI.72.1.508-514.2004.
Cupolillo E, Grimaldi Junior G, Momen H, Beverley SM: Intergenic region typing (IRT): a rapid molecular approach to the characterization and evolution of Leishmania. Molecular and Biochemical Parasitology. 1995, 73 (1-2): 145-155. 10.1016/0166-6851(95)00108-D.
Davila AM, Momen H: Internal-transcribed-spacer (ITS) sequences used to explore phylogenetic relationships within Leishmania. Ann Trop Med Parasitol. 2000, 94 (6): 651-654. 10.1080/00034980050152085.
Pages M, Bastien P, Veas F, Rossi V, Bellis M, Wincker P, Rioux JA, Roizes G: Chromosome size and number polymorphisms in Leishmania infantum suggest amplification/deletion and possible genetic exchange. Mol Biochem Parasitol. 1989, 36 (2): 161-168. 10.1016/0166-6851(89)90188-6.
Britto C, Ravel C, Bastien P, Blaineau C, Pages M, Dedet JP, Wincker P: Conserved linkage groups associated with large-scale chromosomal rearrangements between Old World and New World Leishmania genomes. Gene. 1998, 222 (1): 107-117. 10.1016/S0378-1119(98)00472-7.
Iovannisci DM, Beverley SM: Structural alterations of chromosome 2 in Leishmania major as evidence for diploidy, including spontaneous amplification of the mini-exon array. Mol Biochem Parasitol. 1989, 34 (2): 177-188. 10.1016/0166-6851(89)90009-1.
Hasegawa M, Kishino H, Yano T: Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 1985, 22 (2): 160-174. 10.1007/BF02101694.
Bittencourt A, Barral A, de Jesus AR, de Almeida RP, Grimaldi Junior G: In situ identification of Leishmania amazonensis associated with diffuse cutaneous leishmaniasis in Bahia, Brazil. Memórias do Instituto Oswaldo Cruz. 1989, 84 (4): 585-586.
Hillis DM, Dixon MT: Ribosomal DNA: molecular evolution and phylogenetic inference. Q Rev Biol. 1991, 66 (4): 411-453. 10.1086/417338.
von Haeseler A, Strimmer K: Phylogeny inference based on maximum-likelihood methods with TREE-PUZZLE. The Phylogenetic Handbook: a pratical approach to DNA and protein phylogeny. Edited by: Salemi M, Vandamme AM. 2003, Cambridge , Cambridge University Press
El Tai NO, El Fari M, Mauricio I, Miles MA, Oskam L, El Safi SH, Presber WH, Schonian G: Leishmania donovani: intraspecific polymorphisms of Sudanese isolates revealed by PCR-based analyses and DNA sequencing. Exp Parasitol. 2001, 97 (1): 35-44. 10.1006/expr.2001.4592.
Schonian G, Akuffo H, Lewin S, Maasho K, Nylen S, Pratlong F, Eisenberger CL, Schnur LF, Presber W: Genetic variability within the species Leishmania aethiopica does not correlate with clinical variations of cutaneous leishmaniasis. Molecular and Biochemical Parasitology. 2000, 106 (2): 239-248. 10.1016/S0166-6851(99)00216-9.
Berzunza-Cruz M, Cabrera N, Crippa-Rossi M, Sosa Cabrera T, Perez-Montfort R, Becker I: Polymorphism analysis of the internal transcribed spacer and small subunit of ribosomal RNA genes of Leishmania mexicana. Parasitolology Research. 2002, 88 (10): 918-925. 10.1007/s00436-002-0672-x.
Ishikawa EA, Silveira FT, Magalhaes AL, Guerra junior RB, Melo MN, Gomes R, Silveira TG, Shaw JJ: Genetic variation in populations of Leishmania species in Brazil. Transactions of the Royal Society of Tropical Medicine and Hygiene. 2002, 96 Suppl 1: S111-21. 10.1016/S0035-9203(02)90061-1.
Cupolillo E, Brahim LR, Toaldo CB, de Oliveira-Neto MP, de Brito ME, Falqueto A, de Farias Naiff M, Grimaldi G: Genetic polymorphism and molecular epidemiology of Leishmania (Viannia) braziliensis from different hosts and geographic areas in Brazil. Journal of Clinical Microbiology. 2003, 41 (7): 3126-3132. 10.1128/JCM.41.7.3126-3132.2003.
Zemanova E, Jirku M, Mauricio IL, Miles MA, Lukes J: Genetic polymorphism within the leishmania donovani complex: correlation with geographic origin. The American Journal of Tropical Medicine and Hygiene. 2004, 70 (6): 613-617.
Berzunza-Cruz M, Bricaire G, Romero SZ, Perez-Becker R, Saavedra-Lira E, Perez-Montfort R, Crippa-Rossi M, Velasco-Castrejon O, Becker I: Leishmania mexicana mexicana: genetic heterogeneity of mexican isolates revealed by restriction length polymorphism analysis of kinetoplast DNA. Experimental Parasitology. 2000, 95 (4): 277-284. 10.1006/expr.2000.4541.
Sreenivas G, Raju BV, Singh R, Selvapandiyan A, Duncan R, Sarkar D, Nakhasi HL, Salotra P: DNA polymorphism assay distinguishes isolates of Leishmania donovani that cause kala-azar from those that cause post-kala-azar dermal Leishmaniasis in humans. Journal of Clinical Microbiology. 2004, 42 (4): 1739-1741. 10.1128/JCM.42.4.1739-1741.2004.
Mahdi M, Elamin EM, Melville SE, Musa AM, Blackwell JM, Mukhtar MM, Elhassan AM, Ibrahim ME: Sudanese mucosal leishmaniasis: isolation of a parasite within the Leishmania donovani complex that differs genotypically from L. donovani causing classical visceral leishmaniasis. Infection, Genetics and Evolution. 2005, 5 (1): 29-33. 10.1016/j.meegid.2004.05.008.
Indiani de Oliveira C, Teixeira MJ, Teixeira CR, Ramos de Jesus J, Bomura Rosato A, Santa da Silva J, Brodskyn C, Barral-Netto M, Barral A: Leishmania braziliensis isolates differing at the genome level display distinctive features in BALB/c mice. Microbes and Infection. 2004, 6 (11): 977-984. 10.1016/j.micinf.2004.05.009.
Momen H, Grimaldi G, Pacheco RS, Jaffe CL, McMahon-Pratt D, Marzochi MC: Brazilian Leishmania stocks phenotypically similar to Leishmania major. The American Journal of Tropical Medicine and Hygiene. 1985, 34 (6): 1076-1084.
Blaineau C, Bastien P, Rioux JA, Roizes G, Pages M: Long-range restriction maps of size-variable homologous chromosomes in Leishmania infantum. Mol Biochem Parasitol. 1991, 46 (2): 292-302. 10.1016/0166-6851(91)90053-9.
Kebede A, De Doncker S, Arevalo J, Le Ray D, Dujardin JC: Size-polymorphism of mini-exon gene-bearing chromosomes among natural populations of Leishmania, subgenus Viannia. Int J Parasitol. 1999, 29 (4): 549-557. 10.1016/S0020-7519(99)00010-7.
Antoniazi S, Lima HC, Cruz AK: Overexpression of miniexon gene decreases virulence of Leishmania major in BALB/c mice in vivo. Mol Biochem Parasitol. 2000, 107 (1): 57-69. 10.1016/S0166-6851(99)00232-7.
Dujardin JC, Gajendran N, Arevalo J, Llanos-Cuentas A, Guerra H, Gomez J, Arroyo J, De Doncker S, Jacquet D, Hamers R, et al: Karyotype polymorphism and conserved characters in the Leishmania (Viannia) braziliensis complex explored with chromosome-derived probes. Ann Soc Belg Med Trop. 1993, 73 (2): 101-118.
Dujardin JC, Dujardin JP, Tibayrenc M, Timperman G, De Doncker S, Jacquet D, Arevalo J, Llanos-Cuentas A, Guerra H, Bermudez H, et al: Karyotype plasticity in neotropical Leishmania: an index for measuring genomic distance among L. (V.) peruviana and L. (V.) braziliensis populations. Parasitology. 1995, 110 ( Pt 1): 21-30.
Castilho TM, Shaw JJ, Floeter-Winter LM: New PCR assay using glucose-6-phosphate dehydrogenase for identification of Leishmania species. J Clin Microbiol. 2003, 41 (2): 540-546. 10.1128/JCM.41.2.540-546.2003.
McMahon-Pratt D, Bennett E, David JR: Monoclonal antibodies that distinguish subspecies of Leishmania braziliensis. The Journal Immunology. 1982, 129 (3): 926-927.
Phred/Phrap/Consed. [http://www.phrap.org]
BlastN. [http://www.ncbi.nlm.nih.gov]
Hall A: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. 1999, 41: 46-49.
Swofford DL: 2003. PAUP* beta version. Phylogenetic AnalysisUsing Parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts,
Huelsenbeck JP: Is the Felsenstein zone a fly trap?. Syst Biol. 1997, 46 (1): 69-74. 10.2307/2413636.
Posada D, Crandall KA: MODELTEST: testing the model of DNA substitution. Bioinformatics. 1998, 14 (9): 817-818. 10.1093/bioinformatics/14.9.817.
Schmidt HA, Strimmer K, Vingron M, von Haeseler A: TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics. 2002, 18 (3): 502-504. 10.1093/bioinformatics/18.3.502.
Strimmer K, von Haeseler A: Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc Natl Acad Sci U S A. 1997, 94 (13): 6815-6819. 10.1073/pnas.94.13.6815.
Page RD: TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci. 1996, 12 (4): 357-358.
Wu KS, Jones R, Danneberger L, Scolnik PA: Detection of microsatellite polymorphisms without cloning. Nucleic Acids Res. 1994, 22 (15): 3257-3258. 10.1093/nar/22.15.3257.
Sneath PH, Sokal RR: Numerical taxonomy. 1973, San Francisco , Freeman
Pavlicek A, Hrda S, Flegr J: Free-Tree--freeware program for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of the tree robustness. Application in the RAPD analysis of genus Frenkelia. Folia Biol (Praha). 1999, 45 (3): 97-99.
Cruz A, Beverley SM: Gene replacement in parasitic protozoa. Nature. 1990, 348 (6297): 171-173. 10.1038/348171a0.