Genetic analysis reveals temporal population structure in Caribbean spiny lobster (Panulirus argus) within marine protected areas in Mexico

Fisheries Research - Tập 172 - Trang 44-49 - 2015
Nathan K. Truelove1,2, Kim Ley-Cooper3, Iris Segura-García2,4, Patricia Briones-Fourzán4, Enrique Lozano-Álvarez4, Bruce F. Phillips3, Stephen J. Box2, Richard F. Preziosi1
1Faculty of Life Sciences, The University of Manchester, Manchester M13 9PT, UK
2Smithsonian Museum of Natural History, Smithsonian Marine Station, Fort Pierce, FL 34949, USA
3Department of Environment and Agriculture, Curtin University, Bentley, WA, Australia
4Instituto de Ciencias del Mar y Limnología, Unidad Académica Puerto Morelos, Universidad Nacional Autónoma de México, PO Box 1152, Cancún 77500, Mexico

Tài liệu tham khảo

Alberto, 2009, MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles, J. Hered., 100, 394, 10.1093/jhered/esn110 Anderson, 2001, A new method for non-parametric multivariate analysis of variance, Austral Ecol., 26, 32 Behringer, 2011, Review of Panulirus argus virus 1—a decade after its discovery, Dis. Aquat. Organ., 94, 153, 10.3354/dao02326 Benjamini, 1995, Controlling the false discovery rate: a practical and powerful approach to multiple testing, J. R. Stat. Soc. Ser. B.: Methodol., 57, 289 Bezaury-Creel, 2005, Protected areas and coastal and ocean management in México, Ocean Coastal Manage., 48, 1016, 10.1016/j.ocecoaman.2005.03.004 Briones-Fourzán, 2008, Postlarval settlement of the spiny lobster Panulirus argus along the Caribbean coast of Mexico: patterns, influence of physical factors, and possible sources of origin, Limnol. Oceanogr., 53, 970, 10.4319/lo.2008.53.3.0970 Butler, 2011, Behavior constrains the dispersal of long-lived spiny lobster larvae, Mar. Ecol. Prog. Ser., 422, 223, 10.3354/meps08878 Butler, 2006, Juvenile and adult ecology, 263 Butler, 2001, Modelling the effect of spatial variation in postlarval supply and habitat structure on recruitment of Caribbean spiny lobster, Mar. Freshwater Res., 52, 1243, 10.1071/MF01051 De Wit, 2013, Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation, Mol. Ecol., 22, 2884, 10.1111/mec.12081 Diniz, 2005, Microsatellites in the overexploited spiny lobster, Panulirus argus: isolation, characterization of loci and potential for intraspecific variability studies, Conserv. Genet., 6, 637, 10.1007/s10592-005-9018-4 Diniz, 2004, Polymorphic tetranucleotide microsatellite markers in the Caribbean spiny lobster, Panulirus argus, Mol. Ecol. Notes, 4, 327, 10.1111/j.1471-8286.2004.00683.x Dixon, 2009, VEGAN, a package of R functions for community ecology, J. Veg. Sci., 14, 927, 10.1111/j.1654-1103.2003.tb02228.x Ehrhardt, 2008, Estimating growth of the Florida spiny lobster, Panulirus argus, from molt frequency and size increment data derived from tag and recapture experiments, Fish. Res., 93, 332, 10.1016/j.fishres.2008.06.008 Ehrhardt, 2010, Implications of the ecosystem approach to fisheries management in large ecosystems: the Caribbean spiny lobster, Panulirus argus, fisheries as a case, 157 Gerlach, 2010, Calculations of population differentiation based on GST and D: forget GST but not all of statistics!, Mol. Ecol., 19, 3845, 10.1111/j.1365-294X.2010.04784.x Goudet, 2005, Hierfstat, a package for r to compute and test hierarchical F-statistics, Mol. Ecol. Notes, 5, 184, 10.1111/j.1471-8286.2004.00828.x Goudet, 1996, Testing differentiation in diploid populations, Genetics, 144, 1933, 10.1093/genetics/144.4.1933 Gutierrez, 2005, MolKin v2.0: a computer program for genetic analysis of populations using molecular coancestry information, J. Hered., 96, 718, 10.1093/jhered/esi118 Hauser, 2002, Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus), Proc. Natl. Acad. Sci., 99, 11742, 10.1073/pnas.172242899 Hellberg, 2009, Gene flow and isolation among populations of marine animals, Annu. Rev. Ecol. Evol. Syst., 40, 291, 10.1146/annurev.ecolsys.110308.120223 Ihaka, 1996, R: a language for data analysis and graphics, J. Comput. Graphical Stat., 5, 299 Jombart, 2010, Discriminant analysis of principal components: a new method for the analysis of genetically structured populations, BMC Genet., 11, 94, 10.1186/1471-2156-11-94 Kough, 2013, Larval connectivity and the international management of fisheries, PLoS ONE, 8, e64970, 10.1371/journal.pone.0064970 Ley-Cooper, 2014, An unfished area enhances a spiny lobster, Panulirus argus, fishery: implications for management and conservation within a Biosphere Reserve in the Mexican Caribbean, Fish. Manage. Ecol., 21, 264, 10.1111/fme.12072 Ley-Cooper, 2013, Estimates of exploitation rates of the spiny lobster fishery for Panulirus argus from tagging within the Bahía Espíritu Santo “Sian Ka’an” biosphere reserve, Mexican Caribbean, Mar. Biol. Res., 9, 88, 10.1080/17451000.2012.727434 Ley-Cooper, 2011, Use of artificial shelters (“Casitas”) as an alternative tool for stock evaluation and management of Caribbean spiny lobsters in Banco Chinchorro (México), Proc. Gulf Caribbean Fish. Inst., 64, 449 Lozano-Álvarez, 1993, Occurrence and seasonal variations of the spiny lobster Panulirus argus (Latreille) on the shelf outside Bahía de la Ascensión, México, Fish. Bull., 91, 808 Lozano-Álvarez, 1991, Fishery characteristics, growth, and movements of the spiny lobster Panulirus argus in Bahia de la Ascension, Mexico, Fish. Bull., 89, 79 Lukoschek, 2008, Relative information content of polymorphic microsatellites and mitochondrial DNA for inferring dispersal and population genetic structure in the olive sea snake, Aipysurus laevis, Mol. Ecol., 17, 3062, 10.1111/j.1365-294X.2008.03815.x Maxwell, 2013, Age and size structure of Caribbean spiny lobster, Panulirus argus, in a no-take marine reserve in the Florida Keys, USA, Fish. Res., 144, 84, 10.1016/j.fishres.2012.12.009 Meirmans, 2004, Genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms, Mol. Ecol. Notes, 4, 792, 10.1111/j.1471-8286.2004.00770.x Michalakis, 1996, A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci, Genetics, 142, 1061, 10.1093/genetics/142.3.1061 Naro-Maciel, 2011, Mitochondrial DNA sequence variation in spiny lobsters: population expansion, panmixia, and divergence, Mar. Biol., 158, 2027, 10.1007/s00227-011-1710-y Nielsen, 2012, Gene-associated markers provide tools for tackling illegal fishing and false eco-certification, Nat. Commun., 3, 851, 10.1038/ncomms1845 Oksanen, 2013 Palumbi, 2003, Population genetics, demographic connectivity, and the design of marine reserves, Ecol. Appl., 13, 146, 10.1890/1051-0761(2003)013[0146:PGDCAT]2.0.CO;2 Petit, 2008, Identifying populations for conservation on the basis of genetic markers, Conserv. Biol., 12, 844, 10.1111/j.1523-1739.1998.96489.x Planes, 2002, Temporal change in the genetic structure between and within cohorts of a marine fish, Diplodus sargus, induced by a large variance in individual reproductive success, Mol. Ecol., 11, 1515, 10.1046/j.1365-294X.2002.01521.x Pusack, 2014, Spatial and temporal patterns of larval dispersal in a coral-reef fish metapopulation: evidence of variable reproductive success, Mol. Ecol., 23, 3396, 10.1111/mec.12824 Raymond, 1995, Genepop (version 1.2): population genetics software for exact tests and ecumenicism, J. Hered., 86, 248, 10.1093/oxfordjournals.jhered.a111573 Rousset, 2008, Genepop’007: a complete re-implementation of the Genepop software for Windows and Linux, Mol. Ecol. Resour., 8, 103, 10.1111/j.1471-8286.2007.01931.x Sarver, 1998, Mitochondrial DNA sequence evidence supporting the recognition of two subspecies or species of the Florida spiny lobster Panulirus argus, J. Crustacean Biol., 177, 10.2307/1549532 Selkoe, 2006, Current shifts and kin aggregation explain genetic patchiness in fish recruits, Ecology, 87, 3082, 10.1890/0012-9658(2006)87[3082:CSAKAE]2.0.CO;2 Selkoe, 2008, Seascape genetics and the spatial ecology of marine populations, Fish Fish., 9, 363, 10.1111/j.1467-2979.2008.00300.x Silberman, 1994, Mitochondrial DNA variation and population structure in the spiny lobster Panulirus argus, Mar. Biol., 120, 601, 10.1007/BF00350081 St-Onge, 2015, Tracking larvae with molecular markers reveals high relatedness and early seasonal recruitment success in a partially spawning marine bivalve, Oecologia, 1 Therkildsen, 2013, Atlantic cod Gadus morhua, supplemental methods, Evol. Appl., 6, 690, 10.1111/eva.12055 Tourinho, 2012, Cryptic species within the commercially most important lobster in the tropical Atlantic, the spiny lobster Panulirus argus, Mar. Biol., 159, 1897, 10.1007/s00227-012-1977-7 Tringali, 2008, Ten di- and trinucleotide microsatellite loci in the Caribbean spiny lobster, Panulirus argus, for studies of regional population connectivity, Mol. Ecol. Resour., 8, 650, 10.1111/j.1471-8286.2007.02032.x Truelove, 2012, Genetic connectivity of Caribbean spiny lobster (Panulirus argus) in Belize, Proc. Gulf Caribbean Fish. Inst., 64, 463 Truelove, 2014, Genetic evidence from the spiny lobster fishery supports international cooperation among Central American marine protected areas, Conser. Genet., 16, 347, 10.1007/s10592-014-0662-4 Van Oosterhout, 2004, Micro-checker: software for identifying and correcting genotyping errors in microsatellite data, Mol. Ecol. Notes, 4, 535, 10.1111/j.1471-8286.2004.00684.x