Genetic analysis reveals temporal population structure in Caribbean spiny lobster (Panulirus argus) within marine protected areas in Mexico
Tài liệu tham khảo
Alberto, 2009, MsatAllele_1.0: an R package to visualize the binning of microsatellite alleles, J. Hered., 100, 394, 10.1093/jhered/esn110
Anderson, 2001, A new method for non-parametric multivariate analysis of variance, Austral Ecol., 26, 32
Behringer, 2011, Review of Panulirus argus virus 1—a decade after its discovery, Dis. Aquat. Organ., 94, 153, 10.3354/dao02326
Benjamini, 1995, Controlling the false discovery rate: a practical and powerful approach to multiple testing, J. R. Stat. Soc. Ser. B.: Methodol., 57, 289
Bezaury-Creel, 2005, Protected areas and coastal and ocean management in México, Ocean Coastal Manage., 48, 1016, 10.1016/j.ocecoaman.2005.03.004
Briones-Fourzán, 2008, Postlarval settlement of the spiny lobster Panulirus argus along the Caribbean coast of Mexico: patterns, influence of physical factors, and possible sources of origin, Limnol. Oceanogr., 53, 970, 10.4319/lo.2008.53.3.0970
Butler, 2011, Behavior constrains the dispersal of long-lived spiny lobster larvae, Mar. Ecol. Prog. Ser., 422, 223, 10.3354/meps08878
Butler, 2006, Juvenile and adult ecology, 263
Butler, 2001, Modelling the effect of spatial variation in postlarval supply and habitat structure on recruitment of Caribbean spiny lobster, Mar. Freshwater Res., 52, 1243, 10.1071/MF01051
De Wit, 2013, Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation, Mol. Ecol., 22, 2884, 10.1111/mec.12081
Diniz, 2005, Microsatellites in the overexploited spiny lobster, Panulirus argus: isolation, characterization of loci and potential for intraspecific variability studies, Conserv. Genet., 6, 637, 10.1007/s10592-005-9018-4
Diniz, 2004, Polymorphic tetranucleotide microsatellite markers in the Caribbean spiny lobster, Panulirus argus, Mol. Ecol. Notes, 4, 327, 10.1111/j.1471-8286.2004.00683.x
Dixon, 2009, VEGAN, a package of R functions for community ecology, J. Veg. Sci., 14, 927, 10.1111/j.1654-1103.2003.tb02228.x
Ehrhardt, 2008, Estimating growth of the Florida spiny lobster, Panulirus argus, from molt frequency and size increment data derived from tag and recapture experiments, Fish. Res., 93, 332, 10.1016/j.fishres.2008.06.008
Ehrhardt, 2010, Implications of the ecosystem approach to fisheries management in large ecosystems: the Caribbean spiny lobster, Panulirus argus, fisheries as a case, 157
Gerlach, 2010, Calculations of population differentiation based on GST and D: forget GST but not all of statistics!, Mol. Ecol., 19, 3845, 10.1111/j.1365-294X.2010.04784.x
Goudet, 2005, Hierfstat, a package for r to compute and test hierarchical F-statistics, Mol. Ecol. Notes, 5, 184, 10.1111/j.1471-8286.2004.00828.x
Goudet, 1996, Testing differentiation in diploid populations, Genetics, 144, 1933, 10.1093/genetics/144.4.1933
Gutierrez, 2005, MolKin v2.0: a computer program for genetic analysis of populations using molecular coancestry information, J. Hered., 96, 718, 10.1093/jhered/esi118
Hauser, 2002, Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus), Proc. Natl. Acad. Sci., 99, 11742, 10.1073/pnas.172242899
Hellberg, 2009, Gene flow and isolation among populations of marine animals, Annu. Rev. Ecol. Evol. Syst., 40, 291, 10.1146/annurev.ecolsys.110308.120223
Ihaka, 1996, R: a language for data analysis and graphics, J. Comput. Graphical Stat., 5, 299
Jombart, 2010, Discriminant analysis of principal components: a new method for the analysis of genetically structured populations, BMC Genet., 11, 94, 10.1186/1471-2156-11-94
Kough, 2013, Larval connectivity and the international management of fisheries, PLoS ONE, 8, e64970, 10.1371/journal.pone.0064970
Ley-Cooper, 2014, An unfished area enhances a spiny lobster, Panulirus argus, fishery: implications for management and conservation within a Biosphere Reserve in the Mexican Caribbean, Fish. Manage. Ecol., 21, 264, 10.1111/fme.12072
Ley-Cooper, 2013, Estimates of exploitation rates of the spiny lobster fishery for Panulirus argus from tagging within the Bahía Espíritu Santo “Sian Ka’an” biosphere reserve, Mexican Caribbean, Mar. Biol. Res., 9, 88, 10.1080/17451000.2012.727434
Ley-Cooper, 2011, Use of artificial shelters (“Casitas”) as an alternative tool for stock evaluation and management of Caribbean spiny lobsters in Banco Chinchorro (México), Proc. Gulf Caribbean Fish. Inst., 64, 449
Lozano-Álvarez, 1993, Occurrence and seasonal variations of the spiny lobster Panulirus argus (Latreille) on the shelf outside Bahía de la Ascensión, México, Fish. Bull., 91, 808
Lozano-Álvarez, 1991, Fishery characteristics, growth, and movements of the spiny lobster Panulirus argus in Bahia de la Ascension, Mexico, Fish. Bull., 89, 79
Lukoschek, 2008, Relative information content of polymorphic microsatellites and mitochondrial DNA for inferring dispersal and population genetic structure in the olive sea snake, Aipysurus laevis, Mol. Ecol., 17, 3062, 10.1111/j.1365-294X.2008.03815.x
Maxwell, 2013, Age and size structure of Caribbean spiny lobster, Panulirus argus, in a no-take marine reserve in the Florida Keys, USA, Fish. Res., 144, 84, 10.1016/j.fishres.2012.12.009
Meirmans, 2004, Genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms, Mol. Ecol. Notes, 4, 792, 10.1111/j.1471-8286.2004.00770.x
Michalakis, 1996, A generic estimation of population subdivision using distances between alleles with special reference for microsatellite loci, Genetics, 142, 1061, 10.1093/genetics/142.3.1061
Naro-Maciel, 2011, Mitochondrial DNA sequence variation in spiny lobsters: population expansion, panmixia, and divergence, Mar. Biol., 158, 2027, 10.1007/s00227-011-1710-y
Nielsen, 2012, Gene-associated markers provide tools for tackling illegal fishing and false eco-certification, Nat. Commun., 3, 851, 10.1038/ncomms1845
Oksanen, 2013
Palumbi, 2003, Population genetics, demographic connectivity, and the design of marine reserves, Ecol. Appl., 13, 146, 10.1890/1051-0761(2003)013[0146:PGDCAT]2.0.CO;2
Petit, 2008, Identifying populations for conservation on the basis of genetic markers, Conserv. Biol., 12, 844, 10.1111/j.1523-1739.1998.96489.x
Planes, 2002, Temporal change in the genetic structure between and within cohorts of a marine fish, Diplodus sargus, induced by a large variance in individual reproductive success, Mol. Ecol., 11, 1515, 10.1046/j.1365-294X.2002.01521.x
Pusack, 2014, Spatial and temporal patterns of larval dispersal in a coral-reef fish metapopulation: evidence of variable reproductive success, Mol. Ecol., 23, 3396, 10.1111/mec.12824
Raymond, 1995, Genepop (version 1.2): population genetics software for exact tests and ecumenicism, J. Hered., 86, 248, 10.1093/oxfordjournals.jhered.a111573
Rousset, 2008, Genepop’007: a complete re-implementation of the Genepop software for Windows and Linux, Mol. Ecol. Resour., 8, 103, 10.1111/j.1471-8286.2007.01931.x
Sarver, 1998, Mitochondrial DNA sequence evidence supporting the recognition of two subspecies or species of the Florida spiny lobster Panulirus argus, J. Crustacean Biol., 177, 10.2307/1549532
Selkoe, 2006, Current shifts and kin aggregation explain genetic patchiness in fish recruits, Ecology, 87, 3082, 10.1890/0012-9658(2006)87[3082:CSAKAE]2.0.CO;2
Selkoe, 2008, Seascape genetics and the spatial ecology of marine populations, Fish Fish., 9, 363, 10.1111/j.1467-2979.2008.00300.x
Silberman, 1994, Mitochondrial DNA variation and population structure in the spiny lobster Panulirus argus, Mar. Biol., 120, 601, 10.1007/BF00350081
St-Onge, 2015, Tracking larvae with molecular markers reveals high relatedness and early seasonal recruitment success in a partially spawning marine bivalve, Oecologia, 1
Therkildsen, 2013, Atlantic cod Gadus morhua, supplemental methods, Evol. Appl., 6, 690, 10.1111/eva.12055
Tourinho, 2012, Cryptic species within the commercially most important lobster in the tropical Atlantic, the spiny lobster Panulirus argus, Mar. Biol., 159, 1897, 10.1007/s00227-012-1977-7
Tringali, 2008, Ten di- and trinucleotide microsatellite loci in the Caribbean spiny lobster, Panulirus argus, for studies of regional population connectivity, Mol. Ecol. Resour., 8, 650, 10.1111/j.1471-8286.2007.02032.x
Truelove, 2012, Genetic connectivity of Caribbean spiny lobster (Panulirus argus) in Belize, Proc. Gulf Caribbean Fish. Inst., 64, 463
Truelove, 2014, Genetic evidence from the spiny lobster fishery supports international cooperation among Central American marine protected areas, Conser. Genet., 16, 347, 10.1007/s10592-014-0662-4
Van Oosterhout, 2004, Micro-checker: software for identifying and correcting genotyping errors in microsatellite data, Mol. Ecol. Notes, 4, 535, 10.1111/j.1471-8286.2004.00684.x