Generation of Albino Phenotype in Ornamental Fish by CRISPR/Cas9-Mediated Genome Editing of slc45a2 Gene

Springer Science and Business Media LLC - Tập 25 - Trang 281-290 - 2023
Changqing Zhang1,2, Ziheng Ren2, Zhiyuan Gong2
1Key Laboratory of Birth Regulation and Control Technology of National Health Commission of China, Shandong Provincial Maternal and Child Health Care Hospital, Jinan, China
2Department of Biological Sciences, National University of Singapore, Singapore, Singapore

Tóm tắt

Albinism is the most common color variation described in fish and is a fascinating trait of some ornamental fish species. Albino mutants can be generated by knocking out core genes affecting melanin synthesis like slc45a2 in several fish species. However, genetic mutation remains challenging for species with unknown genome information. In this study, we generated albino mutants in two selected ornamental fish species, royal farlowella (Sturisoma panamense), and redhead cichlid (Vieja melanura). For this purpose, we carried out phylogenetic analyses of fish slc45a2 sequences and identified a highly conserved region among different fish species. A pair of degenerate primers spanning this region was designed and used to amplify a conserved slc45a2 fragment of 340 bp from the two fish species. Based on the amplified sequences, a target site in the 6th exon was used for designing guide RNA and this targeted site was first verified by the CRISPR/Cas9 system in the zebrafish (Danio rerio) model for the effectiveness. Then, specific guide RNAs were designed for the two ornamental fish species and tested. Most of the injected larvae completely lost black pigment over the whole body and eyes. DNA sequencing confirmed a high degree of mutation at the targeted site. Overall, we described a fast and efficient method to generate albino phenotype in fish species by targeting the conserved 6th exon of slc45a2 gene for genome editing via CRISPR/Cas9 and this approach could be a new genetic tool to generate desirable albino ornamental fish.

Tài liệu tham khảo

Antinucci P, Hindges R (2016) A crystal-clear zebrafish for in vivo imaging. Sci Rep 6:29490 Bian C, Li R, Wen Z, Ge W, Shi Q (2021) Phylogenetic analysis of core melanin synthesis genes provides novel insights into the molecular basis of albinism in fish. Front Genet 12:707228 Blanc JM, P. H. (2003) Expression of family differences through within-lot competition in juvenile rainbow trout Oncorhynchus mykiss. J World Aquac Soc 34:425–432 Blitz IL, Biesinger J, Xie X, Cho KW (2013) Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system. Genesis 51:827–834 Bohnsack BL, Gallina D, Kahana A (2011) Phenothiourea sensitizes zebrafish cranial neural crest and extraocular muscle development to changes in retinoic acid and IGF signaling. PLoS ONE 6:e22991 Braasch I, Schartl M, Volff JN (2007) Evolution of pigment synthesis pathways by gene and genome duplication in fish. BMC Evol Biol 7:74 Davis AE, Castranova D, Weinstein BM (2021) Rapid generation of pigment free, immobile zebrafish embryos and larvae in any genetic background using CRISPR-Cas9 dgRNPs. Zebrafish 18:235–242 Dooley CM, Schwarz H, Mueller KP, Mongera A, Konantz M, Neuhauss SC, Nusslein-Volhard C, Geisler R (2013) Slc45a2 and V-ATPase are regulators of melanosomal pH homeostasis in zebrafish, providing a mechanism for human pigment evolution and disease. Pigment Cell Melanoma Res 26:205–217 Edvardsen RB, Leininger S, Kleppe L, Skaftnesmo KO, Wargelius A (2014) Targeted mutagenesis in Atlantic salmon (Salmo salar L.) using the CRISPR/Cas9 system induces complete knockout individuals in the F0 generation. PLoS ONE 9:e108622 Gong Z, Wan H, Tay TL, Wang H, Chen M, Yan T (2003) Development of transgenic fish for ornamental and bioreactor by strong expression of fluorescent proteins in the skeletal muscle. Biochem Biophys Res Commun 308:58–63 Graf J, Voisey J, Hughes I, van Daal A (2007) Promoter polymorphisms in the MATP (SLC45A2) gene are associated with normal human skin color variation. Hum Mutat 28:710–717 Hattori RS, Yoshinaga TT, Butzge AJ, Hattori-Ihara S, Tsukamoto RY, Takahashi NS, Tabata YA (2020) Generation of a white-albino phenotype from cobalt blue and yellow-albino rainbow trout (Oncorhynchus mykiss): Inheritance pattern and chromatophores analysis. PLoS ONE 15:e0214034 Henning F, Renz AJ, Fukamachi S, Meyer A (2010) Genetic, comparative genomic, and expression analyses of the Mc1r locus in the polychromatic Midas cichlid fish (Teleostei, Cichlidae Amphilophus sp.) species group. J Mol Evol 70:405–412 Jao LE, Wente SR, Chen W (2013) Efficient multiplex biallelic zebrafish genome editing using a CRISPR nuclease system. Proc Natl Acad Sci U S A 110:13904–13909 Jeong CB, Kang HM, Hong SA, Byeon E, Lee JS, Lee YH, Choi IY, Bae S, Lee JS (2020) Generation of albino via SLC45a2 gene targeting by CRISPR/Cas9 in the marine medaka Oryzias melastigma. Mar Pollut Bull 154:111038 Karlson CKS, Mohd-Noor SN, Nolte N, Tan BC (2021) CRISPR/dCas9-based systems: Mechanisms and applications in plant sciences. Plants 10:2055. https://doi.org/10.3390/plants10102055 Kelsh RN, Brand M, Jiang YJ, Heisenberg CP, Lin S, Haffter P, Odenthal J, Mullins MC, van Eeden FJ, Furutani-Seiki M, Granato M, Hammerschmidt M, Kane DA, Warga RM, Beuchle D, Vogelsang L, Nusslein-Volhard C (1996) Zebrafish pigmentation mutations and the processes of neural crest development. Development 123:369–389 Kotani H, Taimatsu K, Ohga R, Ota S, Kawahara A (2015) Efficient multiple genome modifications induced by the crRNAs, tracrRNA and Cas9 protein complex in zebrafish. PLoS ONE 10:e0128319 Kratochwil CF, Sefton MM, Meyer A (2015) Embryonic and larval development in the Midas cichlid fish species flock (Amphilophus spp.): a new evo-devo model for the investigation of adaptive novelties and species differences. BMC Dev Biol 15:12. https://doi.org/10.1186/s12861-015-0061-1 Lamason RL, Mohideen MA, Mest JR, Wong AC, Norton HL, Aros MC, Jurynec MJ, Mao X, Humphreville VR, Humbert JE, Sinha S, Moore JL, Jagadeeswaran P, Zhao W, Ning G, Makalowska I, McKeigue PM, O’Donnell D, Kittles R, Parra EJ, Mangini NJ, Grunwald DJ, Shriver MD, Canfield VA, Cheng KC (2005) SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science 310:1782–1786 Lang M, Orgogozo V (2011) Identification of homologous gene sequences by PCR with degenerate primers. Methods Mol Biol 772:245–256 Li Z, Ptak D, Zhang L, Walls EK, Zhong W, Leung YF (2012) Phenylthiourea specifically reduces zebrafish eye size. PLoS ONE 7:e40132 Lister JA, Robertson CP, Lepage T, Johnson SL, Raible DW (1999) nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate. Development 126:3757–3767 Newton JM, Cohen-Barak O, Hagiwara N, Gardner JM, Davisson MT, King RA, Brilliant MH (2001) Mutations in the human orthologue of the mouse underwhite gene (uw) underlie a new form of oculocutaneous albinism, OCA4. Am J Hum Genet 69:981–988 Pan X, Zhan H, Gong Z (2008) Ornamental expression of red fluorescent protein in transgenic founders of white skirt tetra (Gymnocorymbus ternetzi). Mar Biotechnol (NY) 10:497–501 Parker MO, Brock AJ, Millington ME, Brennan CH (2013) Behavioural phenotyping of casper mutant and 1-pheny-2-thiourea treated adult zebrafish. Zebrafish 10:466–471 Preston GM (2003) Cloning gene family members using PCR with degenerate oligonucleotide primers. Methods Mol Biol 226:485–498 Segev-Hadar A, Slosman T, Rozen A, Sherman A, Cnaani A, Biran J (2021) Genome editing using the CRISPR-Cas9 system to generate a solid-red germline of Nile tilapia (Oreochromis niloticus). CRISPR J 4:583–594 Singh AP, Nusslein-Volhard C (2015) Zebrafish stripes as a model for vertebrate colour pattern formation. Curr Biol 25:R81–R92 Smith DR, Spaulding DT, Glenn HM, Fuller BB (2004) The relationship between Na(+)/H(+) exchanger expression and tyrosinase activity in human melanocytes. Exp Cell Res 298:521–534 Steingrimsson E, Copeland NG, Jenkins NA (2004) Melanocytes and the microphthalmia transcription factor network. Annu Rev Genet 38:365–411 Sun D, Qi X, Wen H, Li C, Li J, Chen J, Tao Z, Zhu M, Zhang X, Li Y (2023) The genetic basis and potential molecular mechanism of yellow-albino northern snakehead (Channa argus). Open Biol 13:220235 Wan H, He J, Ju B, Yan T, Lam TJ, Gong Z (2002) Generation of two-color transgenic zebrafish using the green and red fluorescent protein reporter genes gfp and rfp. Mar Biotechnol (NY) 4:146–154 Wiriyasermkul P, Moriyama S, Nagamori S (2020) Membrane transport proteins in melanosomes: Regulation of ions for pigmentation. Biochim Biophys Acta Biomembr 1862:183318 Zhang C, Ren Z, Gong Z (2020) Transgenic expression and genome editing by electroporation of zebrafish embryos. Mar Biotechnol (NY) 22:644–650