Generalized structure and evolution of ITS1 and ITS2 rDNA in black flies (Diptera: Simuliidae)
Tài liệu tham khảo
Adler, 2004
Arnheim, 1983, Concerted evolution of multigene families, 38
Bertone, 2008, Phylogenetics and temporal diversification of the earliest true flies (Insecta; Diptera) based on multiple nuclear genes, Syst. Entomol., 33, 668, 10.1111/j.1365-3113.2008.00437.x
Brockhouse, 1993, Molecular identification of onchocerciasis vector sibling species in black flies (Diptera: Simuliidae), Biochem. Biophys. Res. Commun., 194, 628, 10.1006/bbrc.1993.1867
Brower, 1994, Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution, Proc. Natl. Acad. Sci. USA, 91, 6491, 10.1073/pnas.91.14.6491
Carew, 2007, DNA identification of urban Tanytarsini chironomids (Diptera: Chironomidae), J. N. Am. Benthol. Soc., 26, 586, 10.1899/06-120.1
Crosskey, R.W., Howard, T.M., 2004. A revised taxonomic and geographical inventory of world blackflies (Diptera: Simuliidae). The Natural History Museum, London. Available from: <http://www.nhm.ac.uk/research-curation/projects/blackflie>.
Currie, 1986, An annotated list of and keys to the immature black flies of Alberta (Diptera: Simuliidae), Mem. Entomol. Soc. Can., 134, 1, 10.4039/entm118134fv
Currie, D.C., 1988. Phylogeny of Primitive Simuliidae (Insecta:Diptera: Culicimorpha). Ph.D. dissertation, University of Alberta, Edmonton, Canada.
Currie, 2000, A new black fly (Diptera: Simuliidae) genus from mid Cretaceous (Turonian) amber of New Jersey, 473
Drummond, A.J., Ashton, B., Cheung, M., Heled, J., Kearse, M., Moir, R., Stones-Havas, S., Thierer, T., Wilson, A., 2007. Geneious V3.6. Available from: <http://www.geneious.com/>.
Finn, 2006, Population genetic structure of a rare high-elevation black fly, Metacnephia coloradensis, occupying Colorado lake outlet streams, Freshw. Biol., 51, 2240, 10.1111/j.1365-2427.2006.01647.x
Gaudreau, 2008, Recent origins and genetic fragmentation of Simulium (Hebridosimulium) laciniatum (Diptera), the endemic Fijian simuliid, Invertebr. Syst., 22, 555, 10.1071/IS08024
Grenier, 1960, Remarques sur la classification des Simuliidae, Bull. Soc. Pathol. Exot., 53, 727
Guindon, 2003, A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood, Syst. Biol., 52, 696, 10.1080/10635150390235520
Gutell, 1985, Comparative anatomy of 16-S-like ribosomal RNA, Prog. Nucleic Acids Res. Mol. Biol., 32, 155, 10.1016/S0079-6603(08)60348-7
Jell, 1986, Invertebrates, mainly insects, from the freshwater, Lower Cretaceous, Koonwarra Fossil Bed (Korrumburra Group), South Gippsland, Victoria. Mem. Assoc. Austral. Paleontol., 3, 111
Joseph, 1999, Ribosomal internal spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast, Nucleic Acids Res., 27, 4533, 10.1093/nar/27.23.4533
Joy, 2001, Molecular and morphological phylogenetic analysis of an insular radiation in Pacific black flies (Simulium), Syst. Biol., 50, 18, 10.1080/106351501750107431
Joy, 2007, Genetic variation tracks ecological segregation in Pacific island black flies, Heredity, 99, 452, 10.1038/sj.hdy.6801023
Kalugina, 1991, New Mesozoic Simuliidae and Leptoconopidae and the origins of blood-sucking in lower dipterans, Paleontol. Zh., 1, 69
Krüger, 2000, Molecular identification and phylogeny of East African Simulium damnosum s.l. and their relationship with West African species of the complex (Diptera: Simuliidae), Insect Mol. Biol., 9, 101, 10.1046/j.1365-2583.2000.00163.x
Krueger, 2006, Cytogenetic and PCR-based identification of S. damnosum ‘Nkusi J’ as the anthropophilic blackfly in the Uluguru onchocerciasis focus in Tanzania, Trop. Med. Int. Health, 11, 1066, 10.1111/j.1365-3156.2006.01662.x
Mai, 1997, The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants, J. Mol. Evol., 44, 258, 10.1007/PL00006143
Miller, 1997, Phylogenetic relationships of the Culicomorpha inferred from 18S and 5.8S sequences (Diptera: Nematocera), Insect Mol. Biol., 8, 105, 10.1111/j.1365-2583.1997.tb00078.x
Morales-Hojas, 2002, Completion of the sequence of the nuclear ribosomal DNA subunit of Simulium sanctipauli, with descriptions of the 18S, 28S genes and the IGS, Med. Vet. Entomol., 16, 386, 10.1046/j.1365-2915.2002.00392.x
Moulton, 2000, Molecular sequence data resolves basal divergences within Simuliidae (Diptera), Syst. Entomol., 25, 95, 10.1046/j.1365-3113.2000.00097.x
Moulton, 2003, Can the current molecular arsenal adequately track rapid divergence events within Simuliidae (Diptera)?, Mol. Phylogenet. Evol., 27, 45, 10.1016/S1055-7903(02)00397-4
Nolan, 2007, Rapid diagnostic PCR assays for members of the Culicoides obsoletus and Culicoides pulicaris species complexes, implicated vectors of bluetongue virus in Europe, Vet. Microbiol., 124, 82, 10.1016/j.vetmic.2007.03.019
Peculis, 1998, The structure of the ITS2 proximal stem is required for pre-rRNA processing in yeast, RNA, 4, 1610, 10.1017/S1355838298981420
Perrin, 2006, Phylogenetic analysis of Culicoides species from France based on ITS1-rDNA sequences, Med. Vet. Entomol., 20, 219, 10.1111/j.1365-2915.2006.00616.x
Posada, 1998, Modeltest: testing the model of DNA substitution, Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817
Pruess, 2000, Utility of the mitochondrial cytochrome oxidase II gene for resolving relationships among black flies (Diptera:Simuliidae), Mol. Phylogenet. Evol., 16, 286, 10.1006/mpev.2000.0807
Rodriguez-Pérez, 2006, Analysis of genetic variation in ribosomal DNA internal transcribed spacer and the NADH dehydrogenase subunit 4 mitochondrial genes of the onchocerciasis vector Simulium ochraceum, J. Med. Entomol., 43, 1, 10.1093/jmedent/43.4.701
Rothfels, 1979, Cytotaxonomy of black flies (Simuliidae), Annu. Rev. Entomol., 24, 507, 10.1146/annurev.en.24.010179.002451
Schlötterer, 1994, Comparative evolutionary analysis of rDNA regions in Drosophila, Mol. Biol. Evol., 11, 513
St-Onge, 2008, A molecular revision of the taxonomic status of mermithid parasites of black flies from Quebec (Canada), J. Invertebr. Pathol., 98, 299, 10.1016/j.jip.2008.04.001
Swofford, D.L., 2003. PAUP∗. Phylogenetic analysis using parsimony (∗and other methods) version 4. Sinauer Associates, Boston, MA.
Tang, 1996, Intra-specific heterogeneity of the rDNA internal transcribed spacer in the Simulium damnosum (Diptera:Simuliidae) complex, Mol. Biol. Evol., 13, 244, 10.1093/oxfordjournals.molbev.a025561
Tautz, 1988, Complete sequences of the rRNA genes of Drosophila melanogaster, Mol. Biol. Evol., 5, 366
Thanwisai, 2006, Molecular phylogeny of black flies (Diptera:Simuliidae) from Thailand, using ITS2 rDNA, Genetica, 128, 177, 10.1007/s10709-005-5702-z
Toma, 2002, Investigation of the Aedes (Stegomya) flavopictus complex (Diptera:Culicidae) in Japan by sequence analysis of the internal transcribed spacers of ribosomal DNA, J. Med. Entomol., 39, 461, 10.1603/0022-2585-39.3.461
Van Nues, 1995, Evolutionary conserved structural elements are critical for processing of internal transcribed spacer 2 from Saccharomyces cerevisiae precursor ribosomal RNA, J. Mol. Biol., 250, 24, 10.1006/jmbi.1995.0355
Wood, 1963, The black flies (Diptera:Simuliidae) of Ontario. Part II. Larval identification, with description and illustration, Proc. Entomol. Soc. Ont., 93, 99
Young, 2004, The advantages of the ITS2 region of the nuclear rDNA cistron for analysis of phylogenetic relationships of insects: a Drosophila example, Mol. Phylogenet. Evol., 30, 236, 10.1016/S1055-7903(03)00178-7
Zuker, 2003, Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Res., 13, 3406, 10.1093/nar/gkg595