Gene-centric content management system
Tài liệu tham khảo
Legrain, 2011, The human proteome project: current state and future direction, Mol. Cell. Proteomics, 10, 10.1074/mcp.M111.009993
Paik, 2012, The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome, Nat. Biotechnol., 30, 221, 10.1038/nbt.2152
Ponomarenko, 2010, Construction of protein semantic networks using PubMed/MEDLINE, Mol. Biol. (Mosk), 44, 152, 10.1134/S0026893310010176
Uhlén, 2012, Antibody-based protein profiling of the human chromosome 21, Mol. Cell. Proteomics, 11, 10.1074/mcp.M111.013458
Karolchik, 2012, The UCSC Genome Browser
Nilsson, 2010, Mass spectrometry in high-throughput proteomics: ready for the big time, Nat. Methods, 7, 681, 10.1038/nmeth0910-681
Goode, 2013, The proteome browser web portal, J. Proteome Res., 12, 172, 10.1021/pr3010056
Guo, 2013, CAPER: a Chromosome-assembled Human Proteome browsER, J. Proteome Res., 12, 179, 10.1021/pr300831z
Jeong, 2013, GenomewidePDB, a proteomic database exploring the comprehensive protein parts list and transcriptome landscape in human chromosomes, J. Proteome Res., 12, 106, 10.1021/pr3009447
Jenkinson, 2008, Integrating biological data—the distributed annotation system, BMC Bioinforma., 9, S3, 10.1186/1471-2105-9-S8-S3
Burkhart, 2012, The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways, Blood, 120, e73, 10.1182/blood-2012-04-416594
Muzny, 2012, Comprehensive molecular characterization of human colon and rectal cancer, Nature, 487, 330, 10.1038/nature11252
Vizcaíno, 2010, The Proteomics Identifications database: 2010 update, Nucleic Acids Res., 38, D736, 10.1093/nar/gkp964
Craig, 2004, Open source system for analyzing, validating, and storing protein identification data, J. Proteome Res., 3, 1234, 10.1021/pr049882h
Franceschini, 2013, STRING V9.1: protein–protein interaction networks, with increased coverage and integration, Nucleic Acids Res., 41, D808, 10.1093/nar/gks1094
Apweiler, 2011, Reorganizing the protein space at the Universal Protein Resource (UniProt), Nucleic Acids Res., 40, D71
Lane, 2012, neXtProt: a knowledge platform for human proteins, Nucleic Acids Res., 40, 76, 10.1093/nar/gkr1179
Paik, 2012, Standard guidelines for the chromosome-centric human proteome project, J. Proteome Res., 11, 2005, 10.1021/pr200824a
Geiger, 2012, Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins, Mol. Cell. Proteomics, 11, 10.1074/mcp.M111.014050
Omenn, 2007, THE HUPO Human Plasma Proteome Project, Proteomics Clin. Appl., 1, 769, 10.1002/prca.200700369
Rosenbloom, 2012, ENCODE whole-genome data in the UCSC Genome Browser: update 2012, Nucleic Acids Res., 40, D912, 10.1093/nar/gkr1012
Muzny, 2012, Comprehensive molecular characterization of human colon and rectal cancer, Nature, 487, 330, 10.1038/nature11252
Deutsch, 2008, PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows, EMBO Rep., 9, 429, 10.1038/embor.2008.56
Omenn, 2005, Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database, Proteomics, 5, 3226, 10.1002/pmic.200500358
Krupp, 2012, RNA-Seq Atlas—a reference database for gene expression profiling in normal tissue by next-generation sequencing, Bioinformatics, 28, 1184, 10.1093/bioinformatics/bts084
Safran, 2010, GeneCards Version 3: the human gene integrator, Database, 2010, baq020, 10.1093/database/baq020
Uhlen, 2010, Towards a knowledge-based human protein atlas, Nat. Biotechnol., 28, 1248, 10.1038/nbt1210-1248
Schaab, 2012, Analysis of high accuracy, quantitative proteomics data in the MaxQB database, Mol. Cell. Proteomics, 11, 10.1074/mcp.M111.014068
Zgoda, 2013, Chromosome 18 transcriptome profiling and targeted proteome mapping in depleted plasma, liver tissue and HepG2 cells, J. Proteome Res., 12, 123, 10.1021/pr300821n