GAPDH spike RNA as an alternative for housekeeping genes in relative gene expression assay using real-time PCR
Tóm tắt
Từ khóa
Tài liệu tham khảo
Atwan Z. Promyelocytic leukaemia protein isoform ii and mild heat stress compromise human adenovirus type 5 gene expression: University of Warwick; 2016.
Ayers D, Clements DN, Salway F, Day PJR (2007) Expression stability of commonly used reference genes in canine articular connective tissues. BMC Vet Res 3(1):7
Barber RD, Harmer DW, Coleman RA, Clark BJ (2005) GAPDH as a housekeeping gene: analysis of GAPDH mRNA expression in a panel of 72 human tissues. Physiol Genomics 21(3):389–395
Bustin SA (2000) Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J Mol Endocrinol 25(2):169–193
Chen C, Xie T, Ye S, Jensen AB, Eilenberg J (2016) Selection of reference genes for expression analysis in the entomophthoralean fungus Pandora neoaphidis. Braz J Microbiol 47(1):259–265
Chen Y. The role of PML-II in type I interferon response and gene transcription regulation: University of Warwick; 2014.
Chen Y, Wright J, Meng X, Leppard KN. Promyelocytic leukemia protein isoform II promotes transcription factor recruitment to activate interferon β and interferon-responsive gene expression. Molecular and cellular biology. 2015:MCB. 01478-14.
Cronin M, Ghosh K, SistAre F, Quackenbush J, VilKer V, O’Connell C. Universal RNA reference materials for gene expression. Clinical Chemistry; 2004.
Cui X, Zhou J, Qiu J, Johnson MR, Mrug M (2009) Validation of endogenous internal real-time PCR controls in renal tissues. Am J Nephrol 30(5):413–417
Dheda K, Huggett JF, Bustin SA, Johnson MA, Rook G, Zumla A (2004) Validation of housekeeping genes for normalizing RNA expression in real-time PCR. Biotechniques. 37(1):112–119
Gibson UE, Heid CA, Williams PM (1996) A novel method for real time quantitative RT-PCR. Genome Res 6(10):995–1001
Gorzelniak K, Janke J, Engeli S, Sharma AM (2001) Validation of endogenous controls for gene expression studies in human adipocytes and preadipocytes. Horm Metab Res 33(10):625–627
Higuchi R, Fockler C, Dollinger G, Watson R (1993) Kinetic PCR analysis: real-time monitoring of DNA amplification reactions. Nat Biotechnol 11(9):1026
Huggett J, Dheda K, Bustin S, Zumla A (2005) Real-time RT-PCR normalisation; strategies and considerations. Genes Immun 6(4):279
Ivan Bower N, Joachim Moser R, Robert Hill J, Arabella LS (2007) Universal reference method for real-time PCR gene expression analysis of preimplantation embryos. Biotechniques 42(2):199–206
Jiang L, Schlesinger F, Davis CA, Zhang Y, Li R, Salit M et al (2011) Synthetic spike-in standards for RNA-seq experiments. Genome Res 21:1543
Kalejta RF, Shenk T (2002) Manipulation of the cell cycle by human cytomegalovirus. Front Biosci 7(1):295–306
Krog GR, Clausen FB, Dziegiel MH (2007) Quantitation of RHD by real-time polymerase chain reaction for determination of RHD zygosity and RHD mosaicism/chimerism: an evaluation of four quantitative methods. Transfusion 47(4):715–722
Livak KJ. ABI prism 7700 sequence detection system user bulletin# 2 relative quantification of gene expression. ABI company publication 1997.
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method. Methods 25(4):402–408
Meller M, Vadachkoria S, Luthy DA, Williams MA (2005) Evaluation of housekeeping genes in placental comparative expression studies. Placenta. 26(8-9):601–607
Menager P, Roux P, Megret F, Bourgeois J-P, Le Sourd A-M, Danckaert A et al (2009) Toll-like receptor 3 (TLR3) plays a major role in the formation of rabies virus Negri Bodies. PLoS Pathog 5(2):e1000315
Pfaffl MW, Hageleit M (2001) Validities of mRNA quantification using recombinant RNA and recombinant DNA external calibration curves in real-time RT-PCR. Biotechnol Lett 23(4):275–282
Radonić A, Thulke S, Bae H-G, Müller MA, Siegert W, Nitsche A (2005) Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, yellow fever virus, human herpesvirus-6, camelpox virus and cytomegalovirus infections. Virol J 2(1):7
Radonić A, Thulke S, Mackay IM, Landt O, Siegert W, Nitsche A (2004) Guideline to reference gene selection for quantitative real-time PCR. Biochem Biophys Res Commun 313(4):856–862
Schreiner S, Bürck C, Glass M, Groitl P, Wimmer P, Kinkley S et al (2013) Control of human adenovirus type 5 gene expression by cellular Daxx/ATRX chromatin-associated complexes. Nucleic Acids Res 41(6):3532–3550
Skern R, Frost P, Nilsen F (2005) Relative transcript quantification by quantitative PCR: roughly right or precisely wrong? BMC Mol Biol 6(1):10
Svingen T, Spiller CM, Kashimada K, Harley VR, Koopman P (2009) Identification of suitable normalizing genes for quantitative real-time RT-PCR analysis of gene expression in fetal mouse gonads. Sex Dev 3(4):194–204
Tanaka K-I, Namba T, Arai Y, Fujimoto M, Adachi H, Sobue G et al (2007) Genetic evidence for a protective role for heat shock factor 1 and heat shock protein 70 against colitis. J Biol Chem 282(32):23240–23252
Vestergaard AL, Knudsen UB, Munk T, Rosbach H, Martensen PM (2010) Transcriptional expression of type-I interferon response genes and stability of housekeeping genes in the human endometrium and endometriosis. Mol Hum Reprod 17(4):243–254