Funneliformis mosseae alters soil fungal community dynamics and composition during litter decomposition

Albertsen, 2006, Interactions between the external mycelium of the mycorrhizal fungus Glomus intraradices and other soil microorganisms as affected by organic matter, Soil Biol. Biochem., 38, 1008, 10.1016/j.soilbio.2005.08.015 Alexander, 2005, Mycorrhizas and ecosystem processes in tropical rain forest: implications for diversity, 165 Baggi, 2000, Ecological implications of synergistic and antagonistic interactions among growth and non growth analogs present in mixture, Ann. Microbiol., 50, 103 Bastian, 2009, Impact of wheat straw decomposition on successional patterns of soil microbial community structure, Soil Biol. Biochem., 41, 262, 10.1016/j.soilbio.2008.10.024 Berg, 2003, Limit values for plant litter decomposing in two contrasting soils - influence of litter elemental composition, Acta Oecol., 24, 295, 10.1016/j.actao.2003.08.002 Blackwood, 2007, Molecular analysis of fungal communities and laccase genes in decomposing litter reveals differences among forest types but no impact of nitrogen deposition, Environ. Microbiol., 9, 1306, 10.1111/j.1462-2920.2007.01250.x Bokulich, 2013, Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing, Nat. Methods, 10, 57, 10.1038/nmeth.2276 Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303 Cheng, 2007, Carbon fluxes in the rhizosphere, The Rhizosphere, Ecol. Perspect., 29 de Boer, 2005, Living in a fungal world: impact of fungi on soil bacterial niche development, FEMS Microbiol. Rev., 29, 795, 10.1016/j.femsre.2004.11.005 Driver, 2005, Characterization of glomalin as a hyphal wall component of arbuscular mycorrhizal fungi, Soil Biol. Biochem., 37, 101, 10.1016/j.soilbio.2004.06.011 Dumbrell, 2011, Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing, New Phytol., 190, 794, 10.1111/j.1469-8137.2010.03636.x Edgar, 2004, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Res., 32, 1792, 10.1093/nar/gkh340 Edgar, 2013, UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nat. Methods, 10, 996, 10.1038/nmeth.2604 Edgar, 2011, UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, 27, 2194, 10.1093/bioinformatics/btr381 Fierer, 2003, A proposed mechanism for the pulse in carbon dioxide production commonly observed following the rapid rewetting of a dry soil, Soil Sci. Soc. Am. J., 67, 798, 10.2136/sssaj2003.0798 Frostegard, 2011, Use and misuse of PLFA measurements in soils, Soil Biol. Biochem., 43, 1621, 10.1016/j.soilbio.2010.11.021 Garcia-Palacios, 2013, Climate and litter quality differently modulate the effects of soil fauna on litter decomposition across biomes (vol 16, pg 1045, 2013), Ecol. Lett., 16, 10.1111/ele.12137 Gryndler, 2002, Interaction between arbuscular mycorrhizal fungi and cellulose in growth substrate, Appl. Soil Ecol., 19, 279, 10.1016/S0929-1393(02)00004-5 Gui, 2017, Arbuscular mycorrhiza enhance the rate of litter decomposition while inhibiting soil microbial community development, Sci. Rep. Uk, 7, 42184, 10.1038/srep42184 Haas, 2011, Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons, Genome Res., 21, 494, 10.1101/gr.112730.110 Hammer, 2001, Paleontological statistics software: package for education and data analysis, Palaeontol. Electron., 4 Hanackova, 2015, Fungal succession in the needle litter of a montane Picea abies forest investigated through strain isolation and molecular fingerprinting, Fungal Ecol., 13, 157, 10.1016/j.funeco.2014.09.007 Herman, 2012, Interactions between an arbuscular mycorrhizal fungus and a soil microbial community mediating litter decomposition, FEMS Microbiol. Ecol., 80, 236, 10.1111/j.1574-6941.2011.01292.x Hewitt, 1966, vol. 1 Hobbie, 2007, Evidence that saprotrophic fungi mobilise carbon and mycorrhizal fungi mobilise nitrogen during litter decomposition, New Phytol., 173, 447, 10.1111/j.1469-8137.2007.01984.x Hodge, 2001, Arbuscular mycorrhizal fungi influence decomposition of, but not plant nutrient capture from, glycine patches in soil, New Phytol., 151, 725, 10.1046/j.0028-646x.2001.00200.x Hodge, 2001, An arbuscular mycorrhizal fungus accelerates decomposition and acquires nitrogen directly from organic material, Nature, 413, 297, 10.1038/35095041 Hooker, 2007, Polysaccharides and monosaccharides in the hyphosphere of the arbuscular mycorrhizal fungi Glomus E3 and Glomus tenue, Soil Biol. Biochem., 39, 680, 10.1016/j.soilbio.2006.08.006 Ihrmark, 2012, New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities, FEMS Microbiol. Ecol., 82, 666, 10.1111/j.1574-6941.2012.01437.x Koljalg, 2013, Towards a unified paradigm for sequence-based identification of fungi, Mol. Ecol., 22, 5271, 10.1111/mec.12481 Krishna, 2017, Litter decomposition in forest ecosystems: a review, Energy Ecol. Environ., 2, 236, 10.1007/s40974-017-0064-9 Kuramae, 2013, Structural and functional variation in soil fungal communities associated with litter bags containing maize leaf, FEMS Microbiol. Ecol., 84, 519, 10.1111/1574-6941.12080 Lavelle, 1993, A hierarchical model for decomposition in terrestrial ecosystems: application to soils of the humid tropics, Biotropica, 130, 10.2307/2389178 Leigh, 2009, Arbuscular mycorrhizal fungi can transfer substantial amounts of nitrogen to their host plant from organic material, New Phytol., 181, 199, 10.1111/j.1469-8137.2008.02630.x Leigh, 2011, Growth and symbiotic effectiveness of an arbuscular mycorrhizal fungus in organic matter in competition with soil bacteria, FEMS Microbiol. Ecol., 76, 428, 10.1111/j.1574-6941.2011.01066.x Lentendu, 2011, Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing, Fungal Divers., 49, 113, 10.1007/s13225-011-0101-5 LoganJ.R.V.JacobsonK.M.JacobsonP.J.EvansS.The effects of non-rainfall moisture on fungal communities and standing grass litter decomposition in a hyperarid desert. In AGU Fall Meeting Abstracts. Magoč, 2011, FLASH: fast length adjustment of short reads to improve genome assemblies., Bioinformatics, 27, 2957, 10.1093/bioinformatics/btr507 Ma, 2013, Ascomycota members dominate fungal communities during straw residue decomposition in arable soil, PLoS One, 8 Mansfeld-Giese, 2002, Bacterial populations associated with mycelium of the arbuscular mycorrhizal fungus Glomus intraradices, FEMS Microbiol. Ecol., 41, 133, 10.1111/j.1574-6941.2002.tb00974.x Marschner, 2005, Interactions between plant species and mycorrhizal colonization on the bacterial community composition in the rhizosphere, Appl. Soil Ecol., 28, 23, 10.1016/j.apsoil.2004.06.007 McGonigle, 1990, 495 Mechri, 2014, Changes in microbial communities and carbohydrate profiles induced by the mycorrhizal fungus (Glomus intraradices) in rhizosphere of olive trees (Olea europaea L.), Appl. Soil Ecol., 75, 124, 10.1016/j.apsoil.2013.11.001 Miyamoto, 2000, Lignin-degrading ability of litter-decomposing basidiomycetes from Picea forests of Hokkaido, Mycoscience, 41, 105, 10.1007/BF02464317 Nottingham, 2013, Root and arbuscular mycorrhizal mycelial interactions with soil microorganisms in lowland tropical forest, FEMS Microbiol. Ecol., 85, 37, 10.1111/1574-6941.12096 Nuccio, 2012 Oliver, 2015, Soil fungal communities respond compositionally to recurring frequent prescribed burning in a managed southeastern US forest ecosystem, For. Ecol. Manag., 345, 1, 10.1016/j.foreco.2015.02.020 Osono, 2007, Ecology of ligninolytic fungi associated with leaf litter decomposition, Ecol. Res., 22, 955, 10.1007/s11284-007-0390-z Pan, 2011, A large and persistent carbon sink in the world's forests, Science, 333, 988, 10.1126/science.1201609 Peršoh, 2013, Fungal community composition shifts along a leaf degradation gradient in a European beech forest, Plant Soil, 362, 175, 10.1007/s11104-012-1271-y Read, 2003, Mycorrhizas and nutrient cycling in ecosystems - a journey towards relevance?, New Phytol., 157, 475, 10.1046/j.1469-8137.2003.00704.x Schoch, 2012, Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi, Proc. Natl. Acad. Sci. U.S.A., 109, 6241, 10.1073/pnas.1117018109 Sherman, 2014, Fungal community-plant litter decomposition relationships along a climate gradient, Pedosphere, 24, 437, 10.1016/S1002-0160(14)60030-8 Šnajdr, 2011, Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition, FEMS Microbiol. Ecol., 75, 291, 10.1111/j.1574-6941.2010.00999.x Song, 2010, Review of mixed forest litter decomposition researches, Acta Ecol. Sin., 30, 221, 10.1016/j.chnaes.2010.06.006 Toljander, 2007, Influence of arbuscular mycorrhizal mycelial exudates on soil bacterial growth and community structure, FEMS Microbiol. Ecol., 61, 295, 10.1111/j.1574-6941.2007.00337.x Treseder, 2014, Shifts in fungal communities during decomposition of boreal forest litter, Fungal Ecol., 10, 58, 10.1016/j.funeco.2013.02.002 Vandenkoornhuyse, 2002, Evolution - extensive fungal diversity in plant roots, Science, 295, 10.1126/science.295.5562.2051 Verbruggen, 2010, Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils, New Phytol., 186, 968, 10.1111/j.1469-8137.2010.03230.x Veresoglou, 2011, Plant species identity and arbuscular mycorrhizal status modulate potential nitrification rates in nitrogen-limited grassland soils, J. Ecol., 99, 1339 Vierheilig, 1998, Ink and vinegar, a simple staining technique for arbuscular-mycorrhizal fungi., Appl. Environ. Microbiol., 64, 5004, 10.1128/AEM.64.12.5004-5007.1998 Voříšková, 2013, Fungal community on decomposing leaf litter undergoes rapid successional changes, ISME J., 7, 477, 10.1038/ismej.2012.116 Welc, 2010, Suppression of other soil microorganisms by mycelium of arbuscular mycorrhizal fungi in root-free soil, Soil Biol. Biochem., 42, 1534, 10.1016/j.soilbio.2010.05.024 White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, PCR protocols: Guide Methods Appl., 18, 315 Whitman, 1998, Prokaryotes: the unseen majority, Proc. Natl. Acad. Sci., 95, 6578, 10.1073/pnas.95.12.6578 Yuste, 2003, Interactive effects of temperature and precipitation on soil respiration in a temperate maritime pine forest, Tree Physiol., 23, 1263, 10.1093/treephys/23.18.1263 Žifčáková, 2011, Enzyme activities of fungi associated with Picea abies needles, Fungal Ecol., 4, 427, 10.1016/j.funeco.2011.04.002