Functional response of soil microbial communities to tillage, cover crops and nitrogen fertilization

Acosta-Martinez, 2011, Multi-location study of soil enzyme activities as affected by types and rates of manure application and tillage practices, Agriculture, 1, 4, 10.3390/agriculture1010004 Alef, 1998, Urease activity, 316 Alvarez, G., Chaussod, R., Cluzeau, D., Godden, B., Lemarié, C., Metzger L., Nicolardot, B., Parat, J., Salducci, X., 2002. Activités biologiques et fertilité des sols. Intérêts et limites des méthodes analytiques disponibles. « Etat et activités biologiques des sols ». ITAB, Online document. Bais, 2006, The role of root exudates in rhizosphere interactions with plants and other organisms, Annu. Rev. Plant Biol., 57, 233, 10.1146/annurev.arplant.57.032905.105159 Bayer, 2006, Carbon sequestration in two Brazilian Cerrado soils under no-till, Soil Tillage Res., 86, 237, 10.1016/j.still.2005.02.023 Bergstrom, 1998, Sensitivity of soil enzyme activities to conservation practices, Soil Sci. Soc. Am. J., 62, 1286, 10.2136/sssaj1998.03615995006200050020x Casida, 1964, Soil dehydrogenase activity, Soil Sci., 98, 371, 10.1097/00010694-196412000-00004 Chaussod, 1996, La qualité biologique des sols: evaluation et implications, Etude et Gestion des Sols, 3, 261 Chen, 2009, Effects of 11 years of conservation tillage on soil organic matter fractions in wheat monoculture in Loess Plateau of China, Soil Tillage Res., 106, 85, 10.1016/j.still.2009.09.009 Costa, 2013, Influence of seasons and land-use practices on soil microbial activity and metabolic diversity in the Montado ecosystem, Eur. J. Soil Biol., 59, 22, 10.1016/j.ejsobi.2013.08.003 Das, 2014, Effects of tillage and biomass on soil quality and productivity of lowland rice cultivation by small scale farmers in North Eastern India, Soil Tillage Res., 143, 50, 10.1016/j.still.2014.05.012 Diosma, 2006, Effect of tillage and N fertilization on microbial physiological profile of soils cultivated with wheat, Soil Tillage Res., 91, 236, 10.1016/j.still.2005.12.008 Fontaine, 2004, Carbon input to soil may decrease soil carbon content, Ecol. Lett., 7, 314, 10.1111/j.1461-0248.2004.00579.x Frac, 2012, Community level physiological profiles (CLPP), characterization and microbial activity of soil amended with dairy sludge, Sensors, 12, 3253, 10.3390/s120303253 Garland, 1991, Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon source utilization, Appl. Environ. Microbiol., 57, 2351, 10.1128/AEM.57.8.2351-2359.1991 Garland, 1997, Analysis and interpretation of community-level physiological profiles in microbial ecology, FEMS Microbiol. Ecol., 24, 289, 10.1111/j.1574-6941.1997.tb00446.x Gomez, 2004, Reproducibility in the response of soil bacterial community-level physiological profiles from a land use intensification gradient, Appl. Soil Ecol., 26, 21, 10.1016/j.apsoil.2003.10.007 Govaerts, 2007, Influence of tillage, residue management, and crop rotation on soil microbial biomass and catabolic diversity, Appl. Soil Ecol., 37, 18, 10.1016/j.apsoil.2007.03.006 Grandy, 2008, Molecular C dynamics downstream: the biochemical decomposition sequence and its impact on soil organic matter structure and function, Sci. Total Environ., 404, 297, 10.1016/j.scitotenv.2007.11.013 Grayston, 2001, Accounting for variability in soil microbial communities of temperate upland grassland ecosystems, Soil Biol. Biochem., 33, 533, 10.1016/S0038-0717(00)00194-2 Guinina, 2015, Sugars in soil and sweets for microorganisms Review of origin, content, composition and fate, Soil Biol. Biochem., 90, 87, 10.1016/j.soilbio.2015.07.021 Hamido, 2009, Cover crop and tillage effects on soil enzyme activities following tomato, Soil Tillage Res., 105, 269, 10.1016/j.still.2009.09.007 Huynh, 2009 Janusauskaite, 2013, The effect of tillage system on soil microbiota in relation to soil structure, Pol. J. Environ. Stud., 22, 1387 Jordan, 2004, Organic farming and agroforestry: alleycropping for mulch production for organic farms of southeastern United States, Agrofor. Syst., 61/62, 79, 10.1023/B:AGFO.0000028991.86647.35 Kladivko, 2001, Tillage systems and soil ecology, Soil Tillage Res., 61, 61, 10.1016/S0167-1987(01)00179-9 Kusliene, 2014, Medium-term response of microbial community to rhizodeposits of white clover and ryegrass and tracing of active processes induced by 13C and 15N labelled exudates, Soil Biol. Biochem., 76, 22, 10.1016/j.soilbio.2014.05.003 Kuzyakov, 2015, Microbial hotspots and hot moments in soil: concept & review, Soil Biol. Biochem., 83, 184, 10.1016/j.soilbio.2015.01.025 Kuzyakov, 2010, Priming effects: interactions between living and dead organicmatter, Soil Biol. Biochem., 42, 1363, 10.1016/j.soilbio.2010.04.003 Lagomarsino, 2009, Soil biochemical indicators as a tool to assess the short-term impact of agricultural management on changes in organic C in a Mediterranean environment, Ecol. Indic., 9, 518, 10.1016/j.ecolind.2008.07.003 Machet J.M., Dubrulle P., Louis P., 1990. Azobil®: a computer program for fertiliser N recommendations based on a predictive balance sheet method. In: Scaife A. Proceedings of the 1 st Congress of the European Society of Agronomy, 5th–7th December 1990, Paris, France.Colmar, France: ESA/INRA/CEC. Mancinelli, 2015, Organic mulching, irrigation and fertilization affect soil CO2 emission and C storage in tomato crop in the Mediterranean environment, Soil Tillage Res., 152, 39, 10.1016/j.still.2015.04.001 Mangalassery, 2015, Impacts of zero tillage on soil enzyme activities, microbial characteristics and organic matter functional chemistry in temperate soils, Eur. J. Soil Biol., 68, 9, 10.1016/j.ejsobi.2015.03.001 Marinari, 2000, Influence of organic and mineral fertilizers on soil biological and physical properties, Bioresour. Technol., 72, 9, 10.1016/S0960-8524(99)00094-2 Marinari, 2006, Chemical and biological indicators of soil quality in organic and conventional farming systems in Central Italy, Ecol. Indic., 6, 701, 10.1016/j.ecolind.2005.08.029 Marschner, 2015, Soil respiration, microbial biomass and nutrient availability after the second amendment are influenced by legacy effects of prior residue addition, Soil Biol. Biochem., 88, 169, 10.1016/j.soilbio.2015.05.023 Martens, 2000, Plant residue biochemistry regulates soil carbon cycling and carbon sequestration, Soil Biol. Biochem., 32, 361, 10.1016/S0038-0717(99)00162-5 Mathew, 2012, Impact of No-tillage and conventional tillage systems on soil microbial communities, Appl. Environ. Soil Sci., 2012, 1, 10.1155/2012/548620 Mazzoncini, 2011, Long-term effect of tillage, nitrogen fertilization and cover crops on soil organic carbon and total nitrogen content, Soil Tillage Res., 114, 165, 10.1016/j.still.2011.05.001 Mbuthia, 2015, Long term tillage, cover crop, and fertilization effects on microbial community structure, activity: Implications for soil quality, Soil Biol. Biochem., 89, 24, 10.1016/j.soilbio.2015.06.016 Melero, 2009, Conservation tillage: short-and long-term effects on soil carbon fractions and enzymatic activities under Mediterranean conditions, Soil Tillage Res., 104, 292, 10.1016/j.still.2009.04.001 Nannipieri, 2009, The chemical and functional characterization of soil N and its biotic components, Soil Biol. Biochem., 41, 2357, 10.1016/j.soilbio.2009.07.013 Nautiyal, 2010, Changes in soil physico-chemical properties and microbial functional diversity due to 14 years of conversion of grassland to organic agriculture in semi-arid agroecosystem, Soil Tillage Res., 109, 55, 10.1016/j.still.2010.04.008 Nunan, 2015, Metabolising old soil carbon: Simply a matter of simple organic matter?, Soil Biol. Biochem., 88, 128, 10.1016/j.soilbio.2015.05.018 Oksanen, J., Blanchet, F.G., Kindt, R., Legendre, P., Minchin, P.R., O’Hara, R.B., Simpson, G.L., Solymos, P., Stevens, M.H.H., Wagner, H., 2015. Vegan: Community Ecology Package Version 2. 3-2. http://cran.r-project.org/. Pohlert, T., 2016. PMCMR: Calculate Pairwise Multiple Comparisons of Mean Rank Sums Version 4.1. http://cran.r-project.org/. Reganold, 1987, Long-term effects of organic and conventional farming on soil erosion, Nature, 330, 370, 10.1038/330370a0 Salinas-Garcia, 1997, Long-term effects of tillage and fertilization on soil organic matter dynamics, Soil Sci. Soc. Am. J., 61, 152, 10.2136/sssaj1997.03615995006100010023x Sanginga, 1997, Nitrogen fixation and nitrogen contribution in promiscuous soybeans in Southern Guinea Savanna of Nigeria, Plant Soil, 195, 257, 10.1023/A:1004207530131 Schimel, 2007, Nitrogen transfer between decomposing leaves of different N status, Soil Biol. Biochem., 39, 1428, 10.1016/j.soilbio.2006.12.037 Schinner, 2012 Six, 2000, Soil macroaggregate turnover and microaggregate formation: a mechanism for C sequestration under no-tillage agriculture, Soil Biol. Biochem., 32, 2099, 10.1016/S0038-0717(00)00179-6 Staben, 1997, Assessment of soil quality in conservation reserve program and wheat-fallow soils, Soil Sci. Soc. Am. J., 61, 124, 10.2136/sssaj1997.03615995006100010019x Sun, 2015, Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw, Soil Biol. Biochem., 88, 9, 10.1016/j.soilbio.2015.05.007 Tabatabai, 1994, Soil enzymes, 775 Verzeaux, 2016, Cover crops prevent the deleterious effect of nitrogen fertilisation on bacterial diversity by maintaining the carbon content of ploughed soil, Geoderma, 281, 49, 10.1016/j.geoderma.2016.06.035 Zeng, 2016, Nitrogen fertilization directly affects soil bacterial diversity and indirectly affects bacterial community composition, Soil Biol. Biochem., 92, 41, 10.1016/j.soilbio.2015.09.018