Fisheries and biodiversity along Mediterranean Sea: Italian and Egyptian coast overview
Tóm tắt
Mediterranean fish species living along Italian (Gaeta) and Egyptian (Alexandria) coasts were analyzed using DNA barcodes for molecular identification. Mitochondrial Cytochrome c Oxidase subunit 1 (COI) gene was sequenced from 31 different marine species to test whether the morphology-based assignment of individuals into 19 families, 6 orders was supported by DNA-based species delimitation and Neighbour Joining cladogram. All COI rRNA gene barcodes were matched with reference sequences of expected species, according to morphological identification. Neighbour joining tree was drawn based on COI rRNA gene and the majority of specimens clustered in agreement with their taxonomic classification. Our results updated Mediterranean edible fish knowledge providing graphical resources, taxonomical and bioinformatics references, improving the genetic fish database and the basic molecular information to strengthen the science–policy interface for biodiversity and ecosystem services as conservation, blue economy, and long-term human well-being.
Tài liệu tham khảo
Akel EHKh, Philips AE (2014) Fisheries and biodiversity of the beach seine catch from the Eastern Harbor, Alexandria, Egypt. Egypt J Aquat Res 40:79–91. doi:10.1016/J.ejar.2014.03.001
Appeltans W, Bouchet P, Boxshall GA, Fauchald K, Gordon DP (2011) World register of marine species. Proceedings of the future of the 21st century ocean: Marine Sciences and European Research Infrastructures, Brest, France, 2012, vol 28, p 30. http://www.marinespecies.org/. Accessed 12 Jan 2017
Bianchi CN, Morri C (2000) Marine biodiversity of the Mediterranean Sea: situation, problems and prospects for future research. Mar Pollut Bull 40:367–376. doi:10.1016/S0025-326X(00)00027-8
Bilecenoglu M, Alfaya JEF, Azzurro E, Baldacconi R, Boyaci YÖ, Circosta V, Compagno LJV, Coppola F, Deidun A, Durgham H, Durucan F, Erguden D, Fernandez-Alvarez FÁ, Gianguzza P (2013) New Mediterranean Marine biodiversity records. Medit Mar Sci 14:463–480. doi:10.12681/mms.676
Briski E, Cristescu ME, Bailey SA, MacIsaac HJ (2011) Use of DNA barcoding to detect invertebrate invasive species from diapausing eggs. Biol Invasions 13:1325–1340. doi:10.1007/s10530-010-9892-7
Charmantier I, Müller-Wille S (2014) Carl Linnaeus’s botanical paper slips (1767–1773). Intellect His Rev 24:215–238. doi:10.1080/17496977.2014.914643
Crocetta F, Agius D, Balistreri P, Bariche M, Bayhan YK, Çakir M, Ciriaco S, Corsini-Foka M, Deidun A, El Zrelli R, Ergüden D, Evans J, Ghelia M, Giavasi M, Kleitou P, Kondylatos G, Lipej L, Mifsud C, Özvarol Y, Pagano A, Portelli P, Poursanidis D, Rabaoui L, Schembri PJ, Taşkin E, Tiralongo F, Zenetos A (2015) New Mediterranean biodiversity records. Medit Mar Sci 16:682–702. doi:10.12681/mms.1477
Di Finizio A, Guerriero G, Russo GL, Ciarcia G (2007) Identification of gadoid species (Pisces, Gadidae) by sequencing and PCR-RFLP analysis of mitochondrial 12S and 16S rRNA gene fragments. Eur Food Res Technol 225:337–344. doi:10.1007/s00217-006-0420-z
Di Pinto A, Marchetti P, Mottola A, Bozzo G, Bonerba E, Ceci E, Bottaro M, Tantillo G (2015) Species identification in fish fillet products using DNA barcoding. Fish Res 170:9–13. doi:10.1016/j.fishres.2015.05.006
Díaz S, Fargione J, Chapin FS, Tilman D (2006) Biodiversity loss threatens human well-being. PLoS Biol 4(8):e277. doi:10.1371/journal.pbio.0040277
Esterbauer H, Dieber-Rotheneder M, Striegl G, Waeg G (1991) Role of vitamin E in preventing the oxidation of low-density lipoprotein. Am J Clin Nutr 53:314S–321S. http://ajcn.nutrition.org/content/53/1/314S
FAO (2003) Report of the expert conservation and international fish trade and food security. ftp://ftp.fao.org/docrep/fao/006/y4961e/y4961E00.pdf. Accessed 12 Jan 2017
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotech 3:294–299
Guerriero G (2013) Non-native species and biodiversity assessment. J Biodivers Endanger Species 1:e104. doi:10.4172/jbes.1000e104
Guerriero G, Di Finizio A, Ciarcia G (2002) Stress-induced changes of plasma antioxidants of aquacultured sea bass, Dicentrarchus labrax. J Comp Biochem Physiol A 132:205–211. doi:10.1016/S1095-6433(01)00549-9
Guerriero G, Ferro R, Russo GL, Ciarcia G (2004) Vitamin E in early stages of sea bass (Dicentrarchus labrax) development. Comp Biochem Physiol A 138:435–439. doi:10.1016/j.cbpb.2004.06.003
Guerriero G, Cuollo M, Agnisola C, Rampacci M, Ciarcia G (2008) α Tocopherol antioxidative resource variations in fish muscle tissue. J Clin Biochem Nutr 43:440–444. http://sfrrj.umin.jp/JCBN.htm
Guerriero G, Di Finizio A, Ciarcia G (2010) Biological pollution: molecular identification of non-native species in the Central Tyrrhenian Sea. Catrina 5:41–47. http://eses-catrina.com/files/06.pdf
Halver JE (2002) The vitamins. In: Halver JE, Hardy RW (eds) Fish nutrition. Academic, San Diego, pp 61–141. doi:10.1016/B978-012319652-1/50003-3
Hebert PDN, Ratnasingham S, de Waard JR (2003a) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc Roy Soc Biol Sci 270:S96–S99. doi:10.1098/rsbl.2003.0025
Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003b) Biological identifications through DNA barcodes. P Roy Soc Biol Sci 270:313–321. doi:10.1098/rspb.2002.2218
Hiddink JG, MacKenzie BR, Rijnsdorp A, Dulvy NK, Nielsen EE, Bekkevold D, Heino M, Lorance P, Ojaveer H (2008) Importance of fish biodiversity for the management of fisheries and ecosystems. Fish Res 90:6–8. doi:10.1016/j.fishres.2007.11.025
Hui D (2013) Global climate change and biodiversity: issues and future research. J Biodivers Endanger Species 1:e105. doi:10.4172/2332-2543.1000e105
Kocher TD, Thomas WK, Meyer A, Edwards SV, Pääbo S, Villablanca FX, Wilson AC (1989) Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci USA 86:6196–6200
Kris-Etherton PM, Harris WS, Appel LJ (2002) Fish consumption, fish oil, omega-3 fatty acids, and cardiovascular disease. Circulation 106:2747–2757. doi:10.1161/01.CIR.0000038493.65177.94
Lahaye R, van der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G, Maurin O, Duthoit S, Barraclough TG, Savolainen V (2008) DNA barcoding the floras of biodiversity hotspots. PNAS 105:2923–2928. doi:10.1073/pnas.0709936105
Madonna A, Alwany MA, Rabbito D, Trocchia S, Labar S, Abdel-Gawad FKh, D’Angelo R, Gallo A, Guerriero G, Ciarcia G (2015) Caves biodiversity in the marine area of Riviera d’Ulisse Regional Park, Italy: Grotta del Maresciallo overview. J Biodivers Endanger Species 3:153. doi:10.4172/2332-2543.10.4172/2332-2543.1000153
Mount DW (2007) Using a FASTA sequence database similarity search. Cold Spring Harb Protoc. doi:10.1101/pdb.top16
Mytilineou Ch, Akel EHKh, Babali N, Balistreri P, Bariche M, Boyaci YÖ, Cilenti L, Constantinou C, Crocetta F, Çelik M, Dereli H, Dounas C, Durucan F, Garrido A, Gerovasileiou V, Kapiris K, Kebapcioglu T, Kleitou P, Krystalas A, Lipej L, Maina I, Marakis P, Mavrič B, Moussa R, Peña-rivas L, Poursanidis D, Renda W, Rizkalla SI, Rosso A, Scirocco T, Sciuto F, Servello G, Tiralongo F, Yapici S, Zenetos A (2016) New Mediterranean biodiversity records (November, 2016). Medit Mar Sci 17:794–821. doi:10.12681/mms.1976
Occhipinti-Ambrogi A, Marchini A, Cantone G, Castelli A, Chimenz C, Cormaci M, Froglia C, Furnari G, Gambi MC, Giaccone G, Giangrande A, Gravili C, Mastrototaro F, Mazziotti C, Orsi-Relini L, Piraino S (2011) Alien species along the Italian coasts: an overview. Biol Invasions 13:215–237. doi:10.1007/s10530-010-9803-y
Patel DK (2014) Biodiversity and its Importance. J Biodivers Endanger Species 2:e117. doi:10.4172/2332-2543.1000e117
Puillandre N, Bouchet P, Boisselier-Dubayle MC, Brisset J, Buge B, Castelin M, Chagnoux S, Christophe T, Corbari L, Lambourdière J, Lozouet P, Marani G, Rivasseau A, Silva N, Terryn Y, Tillier S, Utge J, Samadi S (2012) New taxonomy and old collections: integrating DNA barcoding into the collection curation process. Mol Ecol Res 12:396–402. doi:10.1111/j.1755-0998.2011.03105.x
Rimbach G, Minihane AM, Majewicz J, Fischer A, Pallauf J, Virgli F, Weinberg PD (2002) Regulation of cell signalling by vitamin E. Proc Nutr Soc 61:415–425. doi:10.1079/PNS2002183
Scheffers BR, Joppa LN, Pimm SL, Laurance WF (2012) What we know and don’t know about Earth’s missing biodiversity. Trends Ecol Evol 27:501–510. doi:10.1016/j.tree.2012.05.008
Sievers F, Higgins DG (2013) Clustal Omega, accurate alignment of very large numbers of sequences. Method Mol Biol 1079:105–116. doi:10.1007/978-1-62703-646-7_6
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729. doi:10.1093/molbev/mst197
Trocchia S, Rabbito D, Angelo RD, Ciarcia G, Abdel-Gawad FKh (2015) Blue economy and biodiversity surveillance: fish caviar substitute rapid discrimination. J Biodivers Endanger Species 1:002. doi:10.4172/2332-2543.S1.002
Ward RD (2009) DNA barcode divergence among species and genera of birds and fishes. Molecular Ecology resources 8:1077–1085. doi:10.1111/j.1755-0998.2009.02541.x
Ward RD (2012) FISH-BOL, a case study for DNA barcodes. DNA Barcodes Methods Mol Biol 858:423–439. doi:10.1007/978-1-61779-591-6_21
Ward RD, Zemlak TS, Ines BH, Last PR, Hebert PDN (2005) DNA barcoding Australia’s fish species. Philos T Roy Soc B 360:1847–1857. doi:10.1098/rstb.2005.1716
Waugh J (2007) DNA barcoding in animal species: progress, potential and pitfalls. BioEssays 29:188–197. doi:10.1002/bies.20529