Figure classification in biomedical literature to elucidate disease mechanisms, based on pathways

Artificial Intelligence in Medicine - Tập 49 - Trang 135-143 - 2010
Natsu Ishii1, Asako Koike2, Yasunori Yamamoto3, Toshihisa Takagi1,3
1Department of Computational Biology, Graduate School of Frontier Science, The University of Tokyo, 5-1-5 Kashiwano-ha, Kashiwa, Chiba 277-8568, Japan
2Central Research Laboratory, Hitachi, Ltd., 1-280 Higashi-Koigakubo, Kokubunji, Tokyo 185-8601, Japan
3Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan

Tài liệu tham khảo

Futrelle, 2003, Extraction, layout analysis and classification of diagrams in PDF documents, 1007 Liu, 2004, FigSearch: a figure legend indexing and classification system, Bioinformatics, 20, 2880, 10.1093/bioinformatics/bth316 Shatkay, 2006, Integrating image data into biomedical text categorization, Bioinformatics, 22, e446, 10.1093/bioinformatics/btl235 Kou, 2003, Extracting information from text and images for location proteomics, 499 Murphy, 2004, Extracting and structuring subcellular location information from on-line journal articles: the subcellular location image finder, 22 Qian, 2008, Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models, Bioinformatics, 24, 569, 10.1093/bioinformatics/btm561 Rogaeva, 2007, The neuronal sortilin-related receptor SORL1 is genetically associated with Alzheimer disease, Nature Genetics, 39, 168, 10.1038/ng1943 Kanehisa, 2000, KEGG: Kyoto encyclopedia of genes and genomes, Nucleic Acids Research, 28, 27, 10.1093/nar/28.1.27 Rafkind, 2006, Exploring text and image features to classify images in bioscience literature, 73 http://www.pubmedcentral.nih.gov/ [accessed 1 July 2009]. http://www.ncbi.nlm.nih.gov/ [accessed 1 July 2009]. Porter, 1980, An algorithm for suffix stripping, Program, 14, 130, 10.1108/eb046814 Salton, 1975, A vector space model for automatic indexing, Journal of the American Society for Information Science, 18, 613 Yang, 1997, A comparative study on feature selection in text categorization, 412 Witten, 2005 Quinlan, 1993 Breiman, 1996, Bagging predictors, Machine Learning, 24, 123, 10.1007/BF00058655 Freund, 1997, A decision-theoretic generalization of on-line learning and an application to boosting, Journal of Computer and System Sciences, 55, 119, 10.1006/jcss.1997.1504 Breiman, 2001, Random forests, Machine Learning, 45, 5, 10.1023/A:1010933404324 Vapnik, 1998 Keerthi, 2001, Improvements to Platts's SMO algorithm for SVM classifier design, Neural Computation, 13, 637, 10.1162/089976601300014493 Platt, 1999, Fast training of support vector machines using sequential minimal optimization, 185 Frantzi, 2000, Automatic recognition of multi-word terms: the C-value/NC-value method, International Journal on Digital Libraries, 3, 115, 10.1007/s007999900023 Han, 2006, Substring selection for biomedical document classification, Bioinformatics, 22, 2136, 10.1093/bioinformatics/btl350 Saeys, 2007, A review of feature selection techniques in bioinformatics, Bioinformatics, 23, 2507, 10.1093/bioinformatics/btm344