Feeding by Pseudocalanus copepods in the Bering Sea: Trophic linkages and a potential mechanism of niche partitioning
Tài liệu tham khảo
Aizawa, 2005, Living diatom assemblages from North Pacific and Bering Sea surface waters during summer 1999, Deep Sea Res. II, 52, 2186, 10.1016/j.dsr2.2005.08.008
Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2
Atkinson, 2012, Variable food absorption by Antarctic krill: relationships between diet, egestion rate and the composition and sinking rates of their fecal pellets, Deep Sea Res. II, 59, 147, 10.1016/j.dsr2.2011.06.008
Bailey, 2016, Pseudocalanus Copepods in the Bering Sea: Species Identification, Intraspecific Diversity and Biogeography, Deep-Sea Res II, 134, 173, 10.1016/j.dsr2.2015.04.017
Baroin-Touranchea, 1992, A broad molecular phylogeny of ciliates: identification of major evolutionary trends and radiations within the phylum, Proc. Natl. Acad. Sci., 89, 9764, 10.1073/pnas.89.20.9764
Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303
Cavalier-Smith, 2003, Phylogeny and classification of phylum Cercozoa (Protozoa), Protist, 154, 341, 10.1078/143446103322454112
Collins, 2002, Phylogeny of Medusozoa and the evolution of cnidarians life cycles, J. Evol. Biol., 15, 418, 10.1046/j.1420-9101.2002.00403.x
Clarke, 2006
Clarke, 2001
Cleary, 2012, Krill feeding on sediment in the Gulf of Maine (North Atlantic), Mar. Ecol. Prog. Ser., 455, 157, 10.3354/meps09632
Coyle, 2011, Climate change in the southeastern Bering Sea: impacts on pollock stocks and implications for the oscillating control hypothesis, Fish. Oceanogr., 20, 139, 10.1111/j.1365-2419.2011.00574.x
Craig, 2014, A DNA-based method for investigating feeding by copepod nauplii, J. Plankton Res., 36, 271, 10.1093/plankt/fbt104
Davis, 1960, Comparison of the present vegetation with pollen-spectra in surface samples from Brownington Pond, Vermont, Ecology, 41, 346, 10.2307/1930226
Deagle, 2010, Pyrosequencing faecal DNA to determine diet of little penguins: is what goes in what comes out?, Conserv. Genet., 11, 2039, 10.1007/s10592-010-0096-6
Durbin, 2014, Early reproduction by Calanus glacialis in the northern Bering Sea: the role of ice algae as revealed by molecular analysis, J. Plankton Res., 36, 523, 10.1093/plankt/fbt121
Durbin, 2012, Copepod feeding and digestion rates using prey DNA and qPCR, J. Plankton Res., 34, 72, 10.1093/plankt/fbr082
Edwards, 2006, Regional climate change and harmful algal blooms in the northeast Atlantic, Limnol. Oceanogr., 51, 820, 10.4319/lo.2006.51.2.0820
Edwards, 2004, Impact of climate change on marine pelagic phenology and trophic mismatch, Nature, 430, 881, 10.1038/nature02808
Edgar, 2010, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460, 10.1093/bioinformatics/btq461
Evans, 2008, Phylogenetic placement of the enigmatic parasite, Polypodium hydriforme, within the phylum Cnidaria, BMC Evol. Biol., 8, 139, 10.1186/1471-2148-8-139
Frost, 1989, A taxonomy of the marine calanoid copepod genus Pseudocalanus, Can. J. Zool., 67, 525, 10.1139/z89-077
Gast, 2004, Characterization of protistan assemblages in the Ross Sea, Antarctica, by denaturing gradient gel electrophoresis, Appl. Environ. Microbiol., 70, 2028, 10.1128/AEM.70.4.2028-2037.2004
Gause, 1934
Green, 1997, Mesozooplankton associations with medium to large marine snow aggregates in the northern Gulf of Mexico, J. Plankton Res., 19, 435, 10.1093/plankt/19.4.435
Greenstone, 2012, Removing external DNA contamination for molecular gut-content analysis, Mol. Ecol. Resour., 12, 464, 10.1111/j.1755-0998.2012.03112.x
Guo, 2012, Prevalent ciliate symbiosis on copepods: high genetic diversity and hide distribution detected using small subunit ribosomal RNA gene, PLoS One, 7, e44847, 10.1371/journal.pone.0044847
Hardin, 1960, The competitive exclusion principle, Science, 131, 1292, 10.1126/science.131.3409.1292
Harris, 1982, Comparison of the feeding behavior of Calanus and Pseudocalanus in two experimentally manipulated enclosed ecosystems, J. Mar. Biol. Assoc. UK, 62, 71, 10.1017/S0025315400020117
Hedges, 1997, What happens to terrestrial organic matter in the ocean?, Org. Geochem., 27, 195, 10.1016/S0146-6380(97)00066-1
Hinder, 2012, Changes in marine dinoflagellate and diatom abundance under climate change, Nat. Clim. Change, 2, 271, 10.1038/nclimate1388
Ho, 1985, Symbionts of marine copepoda: an overview, Bull. Mar. Sci., 37, 586
Hu, 2014, Detecting in situ copepod diet diversity using molecular technique: development of a copepod/symbiotic-ciliate-excluding eukaryote-inclusive PCR protocol, PLoS One, 9, 10.1371/journal.pone.0103528
James, 2006, Reconstructing the early evolution of fungi using a six-gene phylogeny, Nature, 443, 818, 10.1038/nature05110
Jarman, 2013, Adélie penguin population diet monitoring by analysis of food DNA in scats, PLoS One, 8, 10.1371/journal.pone.0082227
Ji, 2012, Sensitivity of copepod populations to bottom-up and top-down forcing: a modeling study in the Gulf of Maine region, J. Plankton Res., 35, 66, 10.1093/plankt/fbs070
Kiørboe, 1996, Prey switching behavior in the planktonic copepod Acartia tonsa, Mar. Ecol. Prog. Ser., 143, 65, 10.3354/meps143065
Landry, 1981, Switching between herbivory and carnivory by the planktonic marine copepod Calanus pacificus, Mar. Biol., 65, 77, 10.1007/BF00397070
Lebour, 1922, The food of plankton organisms, J. Mar. Biol. Assoc. UK, 12, 644, 10.1017/S0025315400009681
Lomas, 2012, Spatial and Seasonal variability of primary production on the Eastern Bering Sea shelf, Deep Sea Res. II, 65-70, 126, 10.1016/j.dsr2.2012.02.010
Maly, 1974, Dietary differences between two co-occurring calanoid copepod species, Oecologia, 17, 325, 10.1007/BF00345750
Marshall, 1949, On the biology of the small copepods in Loch Striven, J. Mar. Biol. Assoc. UK, 28, 45, 10.1017/S0025315400055235
Mountain, 2010, Major changes in the Georges Bank ecosystem, 1980s to the 1990s, Mar. Ecol. Prog. Ser., 398, 81, 10.3354/meps08323
Municipality of Anchorage (2013) 〈http://www.muni.org/departments/health/admin/environment/airq/documents/pollwn%202010/pollen%20and%20mold%20calendar%20for%20anchorages.pdf〉.
Murray, 2011, DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches, PLoS One, 10.1371/journal.pone.0025776
Napp, 2002, Interannual and decadal variability in zooplankton communities of the southeast Bering Sea shelf, Deep Sea Res. II, 49, 5991, 10.1016/S0967-0645(02)00330-2
Nejstgaard, 2003, Molecular detection of algal prey in copepod guts and fecal pellets, Limnol. Oceanogr. Methods, 1, 29, 10.4319/lom.2003.1.29
O’Rorke, 2013, Extracting DNA from whole organism homogenates and the risk of false positives in PCR based diet studies: a case study using spiny lobster larvae, J. Exp. Mar. Biol. Ecol., 441, 1, 10.1016/j.jembe.2013.01.003
O’Rorke, 2012, Determining the diet of larvae of Western Rock Lobster (Panulirus cygnus) using high-throughput DNA sequencing techniques, PLoS One, 10.1371/journal.pone.0042757
Overland, 2004, Is the climate of the Bering Sea warming and affecting the ecosystem?, EOS, 85, 309, 10.1029/2004EO330001
Passmore, 2006, DNA as a dietary biomarker in Antarctic krill, Euphausia superba, Mar. Biotechnol., 8, 686, 10.1007/s10126-005-6088-8
Poulet, 1973, Grazing of Pseudocalanus minutus on naturally occurring particulate matter, Limnol. Oceanogr., 18, 564, 10.4319/lo.1973.18.4.0564
Pershing, 2005, Interdecadal variability in the Gulf of Maine zooplankton community, with potential impacts on fish recruitment, ICES J. Mar. Sci., 62, 1511, 10.1016/j.icesjms.2005.04.025
Price, 2010, FastTree 2-approximately maximum-likelihood trees for large alignments, PLoS One, 5, e9490, 10.1371/journal.pone.0009490
Quince, 2009, Accurate determination of microbial diversity from 454 pyrosequencing data, Nat. Methods, 6, 639, 10.1038/nmeth.1361
Sheppard, 2005, Detection of secondary predation by PCR analysis of the gut contents of invertebrate generalist predators, Mol. Ecol., 14, 4461, 10.1111/j.1365-294X.2005.02742.x
Stabeno, 2012, Comparison of warm and cold years on the southeastern Bering Sea shelf and some implications for the ecosystem, Deep Sea Res. II, 65, 31, 10.1016/j.dsr2.2012.02.020
Tiselius, 1990, Foraging behavior of six calanoid copepods; observations and hydrodynamic analysis, Mar. Ecol. Prog. Ser., 6, 23, 10.3354/meps066023
Vestheim, 2005, Assessing feeding of a carnivorous copepod using species-specific PCR, Mar. Biol., 147, 381, 10.1007/s00227-005-1590-0
Von Vaupel Klein, 1997, Cases of niche-partitioning and of habitat segregation in pelagic marine copepods of the genus Euchirella (Crustacea: Copepoda) Zool, Verh. Leiden, 323, 383
Winder, 2012, Phytoplankton response to a changing climate, Hydrobiologia, 698, 5, 10.1007/s10750-012-1149-2
