Extremophiles as a source for novel enzymes
Tóm tắt
Từ khóa
Tài liệu tham khảo
Rozzell, 1999, Commercial scale biocatalysis: myths and realities, Bioorg Med Chem, 7, 2253, 10.1016/S0968-0896(99)00159-5
Herbert, 1992, A perspective on the biotechnological potential of extremophiles, Trends Biotechnol, 10, 395, 10.1016/0167-7799(92)90282-Z
Madigan, 1997, Extremophiles, Sci Am, April, 66
Sellek, 1999, Biocatalysis in organic media using enzymes from extremophiles, Enzyme Microb Technol, 25, 471, 10.1016/S0141-0229(99)00075-7
Marhuenda-Egea, 2002, An extreme halophilic enzyme active at low salt in reversed micelles, J Biotechnol, 93, 159, 10.1016/S0168-1656(01)00392-3
Sterner, 2001, Thermophilic adaptation of proteins, Crit Rev Biochem Mol Biol, 36, 39, 10.1080/20014091074174
Vieille, 2001, Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability, Microbiol Mol Biol Rev, 65, 1, 10.1128/MMBR.65.1.1-43.2001
Van den Burg, 2002, Selection of mutations for increased protein stability, Curr Opin Biotechnol, 13, 333, 10.1016/S0958-1669(02)00325-7
Paiardini, 2002, Structural plasticity of thermophilic serine hydroxymethyltransferases, Proteins, 50, 122, 10.1002/prot.10268
Bentahir, 2000, Structural, kinetic, and calorimetric characterization of the cold-active phosphoglycerate kinase from the Antarctic Pseudomonas sp. TACII18, J Biol Chem, 275, 11147, 10.1074/jbc.275.15.11147
Kim, 1999, Structural basis for cold adaptation. Sequence, biochemical properties, and crystal structure of malate dehydrogenase from a psychrophile Aquaspirillium actricum, J Biol Chem, 274, 11761, 10.1074/jbc.274.17.11761
Fields, 2001, Review: protein function at thermal extremes: balancing stability and flexibility, Comp Biochem Physiol, 129, 417, 10.1016/S1095-6433(00)00359-7
Watanabe, 2002, Purification and characterization of a cold-adapted isocitrate lyase and expression analysis of the cold-inducible isocitrate lyase gene from the psychrophilic bacterium Colwellia psychrerythraea, Extremophiles, 6, 397, 10.1007/s00792-002-0271-x
D’Amico, 2003, Activity-stability relationships in extremophilic enzymes, J Biol Chem, 278, 7891, 10.1074/jbc.M212508200
Fersht A: Three-dimensional structure of enzymes. In Structure and Mechanism in Protein Science. WH Freeman & Co, New York, 1999.
Schoichet, 1995, A relationship between protein stability and protein function, Proc Natl Acad Sci USA, 92, 452, 10.1073/pnas.92.2.452
Van den Burg, 1998, Engineering an enzyme to resist boiling, Proc Natl Acad Sci USA, 95, 2056, 10.1073/pnas.95.5.2056
Beadle, 2002, Structural bases of stability-function tradeoffs in enzymes, J Mol Biol, 321, 285, 10.1016/S0022-2836(02)00599-5
Cavicchioli, 2002, Low-temperature extremophiles and their applications, Curr Opin Biotechnol, 13, 253, 10.1016/S0958-1669(02)00317-8
Deming, 2002, Psychrophiles and polar regions, Curr Opin Microbiol, 5, 301, 10.1016/S1369-5274(02)00329-6
Demirjian, 2001, Enzymes from extremophiles, Curr Opin Chem Biol, 5, 144, 10.1016/S1367-5931(00)00183-6
Danson, 1997, The structural basis of protein halophilicity, Comp Biochem Physiol, 117A, 307, 10.1016/S0300-9629(96)00268-X
Klibanov, 2001, Improving enzymes by using them in organic solvents, Nature, 409, 241, 10.1038/35051719
Kim, 1997, Unusual salt and solvent dependence of a protease from an extreme halophile, Biotech Bioeng, 55, 471, 10.1002/(SICI)1097-0290(19970805)55:3<471::AID-BIT2>3.0.CO;2-9
Piera-Velazquez, 2001, The dependence of a halophilic malate dehydrogenase on ωo and surfactant concentration in reversed micelles, J Mol Catal B Enzym, 13, 49, 10.1016/S1381-1177(00)00228-9
Marhuenda-Egea, 2002, Extreme halophilic enzymes in organic solvents, Curr Opin Biotechnol, 13, 385, 10.1016/S0958-1669(02)00338-5
Kocabiyik, 2002, Intracellular alkaline proteases produced by thermoacidophiles: detection of protease activity by gelatin zymography and polymerase chain reaction (PCR), Bioresource Technol, 84, 29, 10.1016/S0960-8524(02)00019-6
Saeki, 2002, A novel species of alkaliphilic Bacillus that produces an oxidatively stable alkaline serine protease, Extremophiles, 6, 65, 10.1007/s007920100224
Bertoldo, 2002, Starch-hydrolyzing enzymes from thermophilic Archaea and bacteria, Curr Opin Chem Biol, 6, 151, 10.1016/S1367-5931(02)00311-3
Serour, 2002, Novel thermoactive glucoamylases from the thermoacidophilic Archaea Thermoplasma acidophilum, Picrophylus torridus and Picrophilus oshhimae, Antonie Van Leeuwenhoek, 81, 73, 10.1023/A:1020525525490
Gros, 1994, Protein under pressure, Eur J Biochem, 221, 617
Pledger, 1994, A barophilic response by two hyperthermophilic, hydrothermal vent Archaea: an upward shift in the optimal temperature and acceleration of growth rate at supra-optimal temperatures by elevated pressure, FEMS Microbiol Ecol, 14, 233, 10.1111/j.1574-6941.1994.tb00109.x
Hei, 1994, Pressure stabilization of proteins from extreme thermophiles, Appl Environ Microbiol, 60, 932, 10.1128/AEM.60.3.932-939.1994
Hayashi R: Use of high pressure in bioscience and biotechnology. In High pressure Bioscience and Biotechnology. Edited by Hayashi R, Balny C. Elsevier, 1996:1-6.
Abe, 2001, The biotechnological potential of piezophiles, Trends Biotechnol, 19, 102, 10.1016/S0167-7799(00)01539-0
Microbial Database TIGR: a listing of microbial genomes and chromosomes. on World Wide Web URL: http://www.tigr.org/tdb/mbd/mbdinprogress.html.
Ruepp, 2000, The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum, Nature, 407, 508, 10.1038/35035069
Ding, 2002, Genomic and proteomic analyses reveal multiple homologs of genes encoding enzymes of the methanol:coenzyme M methyltransferase system that are differentially expressed in methanol- and acetate-grown Methanosarcina thermophila, FEMS Microbiol Lett, 215, 127, 10.1111/j.1574-6968.2002.tb11381.x
Schiraldi, 2002, Production of biocatalysts and biomolecules from extremophiles, TIBTech, 20, 515, 10.1016/S0167-7799(02)02073-5
Hezayen, 2000, Polymer production by two newly isolated extremely halophilic Archaea: application of a novel corrosion-resistant bioreactor, Appl Microbiol Biotechnol, 54, 319, 10.1007/s002530000394
Park, 2002, Rupture of the cell envelope by decompression of the deep-sea methanogen Methanococcus jannaschii, Appl Environm Microbiol, 68, 1458, 10.1128/AEM.68.3.1458-1463.2002
Toogood, 2002, A thermostable l-aminoacylase from Thermococcus literalis: cloning, overexpression, charcaterization and applications in biotransformations, Extremophiles, 6, 111, 10.1007/s007920100230
de Pascale, 2002, A novel thermophilic fusion enzyme for trehalose production, Extremophiles, 6, 463, 10.1007/s00792-002-0283-6
Imanaka, 2002, Gene cloning and characterization of fructose-1,6-biphosphate aldolase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1, J Biosc Bioeng, 94, 237, 10.1016/S1389-1723(02)80156-6
Lee, 2002, Extremely thermostable glutamate dehydrogenase (GDH) from the freshwater archaeon Thermococcus waiotapuensis: cloning and comparison with two marine hyperthermophilic GDHs, Extremophiles, 6, 151, 10.1007/s007920100238
Kajino, 1999, Isolation of a protease-deficient mutant of Bacillus brevis and efficient secretion of a fungal protein disulfide isomerase by the mutant, J Biosci Bioeng, 87, 37, 10.1016/S1389-1723(99)80005-X
Jang, 2002, A novel subtilisin-like serine protease from Thermoanaerobacter yonseiensis KB-1: its cloning, expression and biochemical properties, Extremophiles, 6, 233, 10.1007/s00792-001-0248-1
Manco, 2002, Modification of the enantioselectivity of two homologous thermophilic carboxylesterases from Alicyclobacillus acidocaldarius and Archaeoglobus fulgidus by random mutagenesis and screening, Extremophiles, 6, 325, 10.1007/s00792-001-0261-4