Expression analysis of key auxin synthesis, transport, and metabolism genes in different young dwarfing apple trees
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Alvarez R, Nissen SJ, Sutter EG (1989) Relationship between indole-3-acetic acid levels in apple (Malus pumila Mill) rootstocks cultured in vitro and adventitious root formation in the presence of indole-3-butyric acid. Plant Physiol 89:439–443
Atkinson C, Else M, Taylor L, Dover C (2003) Root and stem hydraulic conductivity as determinants of growth potential in grafted trees of apple (Malus pumila Mill.). J Exp Bot 54:1221–1229
Chen Q, Dai X, De-Paoli H, Cheng Y, Takebayashi Y, Kasahara H, Kamiya Y, Zhao Y (2014) Auxin overproduction in shoots cannot rescue auxin deficiencies in Arabidopsis roots. Plant Cell Physiol 55:1072–1079
Cornille A, Giraud T, Smulders MJ, Roldán-Ruiz I, Gladieux P (2014) The domestication and evolutionary ecology of apples. Trends Genet 30:57–65
Dal Bosco C, Dovzhenko A, Liu X, Woerner N, Rensch T, Eismann M, Eimer S, Hegermann J, Paponov IA, Ruperti B, Heberle-Bors E, Touraev A, Cohen JD, Palme K (2012) The endoplasmic reticulum localized PIN8 is a pollen-specific auxin carrier involved in intracellular auxin homeostasis. Plant J 71:860–870
Dal Cin V, Velasco R, Ramina A (2009) Dominance induction of fruitlet shedding in Malus × domestica (L Borkh): molecular changes associated with polar auxin transport. BMC Plant Biol 9:139
Ding X, Cao Y, Huang L, Zhao J, Xu C, Li X, Wang S (2008) Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice. Plant Cell 20:228–240
Ding Z, Wang B, Moreno I, Duplakova N, Simon S, Carraro N, Reemmer J, Pencik A, Chen X, Tejos R, Skupa P, Pollmann S, Mravec J, Petrasek J, Zazimalova E, Honys D, Rolcik J, Murphy A, Orellana A, Geisler M, Friml J (2012) ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development in Arabidopsis. Nat Commun 3:941
Dobrev PI, Kamínek M (2002) Fast and efficient separation of cytokinins from auxin and abscisic acid and their purification using mixed-mode solid-phase extraction. J Chromatogr A 950:21–29
Dobrev PI, Havlíček L, Vágner M, Malbeck J, Kamínek M (2005) Purification and determination of plant hormones auxin and abscisic acid using solid phase extraction and two-dimensional high performance liquid chromatography. J Chromatogr A 1075:159–166
Mount DW (2007) Using the Basic Local Alignment Search Tool (BLAST). CSH Protoc 2007
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M (2014) Pfam: the protein families database. Nucleic Acids Res 42:D222–D2230
Gur A, Samish R (1968) The role of auxins and auxin destruction in the vigor effect induced by various apple rootstocks. Beitrage Biol Pfl 45:91–111 (bibl. 47)
Jung S, Ficklin SP, Lee T, Cheng CH, Blenda A, Zheng P, Yu J, Bombarely A, Cho I, Ru S, Evans K, Peace C, Abbott AG, Mueller LA, Olmstead MA, Main D (2014) The Genome Database for Rosaceae (GDR): year 10 update. Nucleic Acids Res 42:D1237–D1244
Kamboj JS, Quinlan JD (1998) The apple rootstock and its influence on endogenous hormones. Acta Hortic 463:143–152
Krecek P, Skupa P, Libus J, Naramoto S, Tejos R, Friml J, Zazimalova E (2009) The PIN-FORMED (PIN) protein family of auxin transporters. Genome Biol 10
Lauri PE, Maguylo K, Trottier C (2006) Architecture and size relations: an essay on the apple (Malus × domestica, Rosaceae) tree. Am J Bot 93:357–368
Leclere S, Tellez R, Rampey RA, Matsuda SPT, Bartel B (2002) Characterization of a family of IAA-amino acid conjugate hydrolases from Arabidopsis. J Biol Chem 277:20446–20452
Letunic I, Doerks T, Bork P (2012) SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res 40:D302–D305
Li LC, Qin GJ, Tsuge T, Hou XH, Ding MY, Aoyama T, Oka A, Chen Z, Gu H, Zhao Y, Qu LJ (2008) SPOROCYTELESS modulates YUCCA expression to regulate the development of lateral organs in Arabidopsis. New Phytol 179:751–764
Lochard R, Schneider G (1981) Stock and scion growth relationships and the dwarfing mechanism in apple. Hortic Rev 3:315–375
Mashiguchi K, Tanaka K, Sakai T, Sugawara S, Kawaide H, Natsume M, Hanada A, Yaeno T, Shirasu K, Yao H, McSteen P, Zhao YD, Hayashi K, Kamiya Y, Kasahara H (2011) The main auxin biosynthesis pathway in Arabidopsis. Proc Natl Acad Sci USA 108:18512–18517
Michalczuk L (2002) Indole-3-acetic acid level in wood, bark and cambial sap of apple rootstocks differing in growth vigour. Acta Physiol Plant 24:131–136
Mravec J, Skupa P, Bailly A, Hoyerova K, Krecek P, Bielach A, Petrasek J, Zhang J, Gaykova V, Stierhof YD, Dobrev PI, Schwarzerova K, Rolcik J, Seifertova D, Luschnig C, Benkova E, Zazimalova E, Geisler M, Friml J (2009) Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter. Nature 459:1136–1140
Ostrowski M, Jakubowska A (2008) Identification of enzyme activity that conjugates indole-3-acetic acid to aspartate in immature seeds of pea (Pisum sativum). J Plant Physiol 165(5):564–569
Ostrowski M, Jakubowska A (2011) Purification and biochemical characterization of indole-3-acetyl-aspartic acid synthetase from immature seeds of pea (Pisum sativum). J Plant Growth Regul 30(1):30–40
Rampey RA, LeClere S, Kowalczyk M, Ljung K, Sandberg G, Bartel B (2004) A family of auxin-conjugate hydrolases that contributes to free indole-3-acetic acid levels during Arabidopsis germination. Plant Physiol 135:978–988
Robinson T, Aldwinckle H, Fazio G, Holleran T (2002) The Geneva series of apple rootstocks from Cornell: performance, disease resistance, and commercialization, In: XXVI international horticultural congress: genetics and breeding of tree fruits and nuts, vol 622, pp 513–520
Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34:374–378
Seleznyova AN, Thorp TG, White M, Tustin S, Costes E (2003) Application of architectural analysis and AMAPmod methodology to study dwarfing phenomenon: the branch structure of ‘Royal Gala’ apple grafted on dwarfing and non-dwarfing rootstock/interstock combinations. Ann Bot 91:665–672
Seleznyova AN, Tustin DS, Thorp TG (2008) Apple dwarfing rootstocks and interstocks affect the type of growth units produced during the annual growth cycle: precocious transition to flowering affects the composition and vigour of annual shoots. Ann Bot 101:679–687
Shehata SAM, El-Shraiy AM (2010) Regulating cucumber grafting by interactions of cytokinins in xylem exudates of rootstock and basipetal polar auxin transport of scion at graft union. Aust J Basic Appl Sci 4:6179–6184
Singh Kamboj J, Quinlan JD (1997) The apple rootstock and its influence on endogenous hormones. In: VIII international symposium on plant bioregulation in fruit production, vol 463, pp 143–152
Soejima J, Yoshida Y, Haniuda T, Bessho H, Tsuchiya S, Masuda T, Komori S, Sanada T, Ito Y, Sadamori S (2010) New dwarfing apple rootstocks ‘JM1’, ‘JM7’ and ‘JM8’. Bull Natl Inst Fruit Tree Sci 11:1–16
Soumelidou K, Battey N, John P, Barnett J (1994a) The anatomy of the developing bud union and its relationship to dwarfing in apple. Ann Bot 74:605–611
Soumelidou K, Morris D, Battey N, Barnett J, John P (1994b) Auxin transport capacity in relation to the dwarfing effect of apple rootstocks. J Hortic Sci 69:719–725
Spiess GM, Hausman A, Yu P, Cohen JD, Rampey RA, Zolman BK (2014) Auxin input pathway disruptions are mitigated by changes in auxin biosynthetic gene expression in Arabidopsis. Plant Physiol 165:1092–1104
Staswick PE, Serban B, Rowe M, Tiryaki I, Maldonado MT, Maldonado MC, Suza W (2005) Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Plant Cell 17(2):616–627
Van Hooijdonk B, Woolley D, Warrington I, Tustin D (2010) Initial alteration of scion architecture by dwarfing apple rootstocks may involve shoot–root–shoot signalling by auxin, gibberellin, and cytokinin. J Hortic Sci Biotechnol 85:59–65
Van Hooijdonk B, Woolley D, Warrington I, Tustin D (2011) Rootstocks modify scion architecture, endogenous hormones, and root growth of newly grafted ‘Royal Gala’ apple trees. J Am Soc Hortic Sci 136:93–102
Won C, Shen X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y (2011) Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci USA 108:18518–18523
Yildirim AN, Polat M, Dolgun O, Askin MA, Gokbayrak Z, San B (2010) Graft formation in some spur and vigorous apple varieties grafted on Ottawa 3 rootstock: a histological investigation. J Food Agric Environ 8:512–514
Yin H, Yan B, Sun J, Jia P, Zhang Z, Yan X, Chai J, Ren Z, Zheng G, Liu H (2012) Graft-union development: a delicate process that involves cell–cell communication between scion and stock for local auxin accumulation. J Exp Bot 63:4219–4232
Zagaja S (1980) Performance of two apple cultivars on P series dwarf rootstocks. In: Symposium on research and development on orchard and plantation systems, vol 114, pp 162–169
Zhang SW, Li CH, Cao J, Zhang YC, Zhang SQ, Xia YF, Sun DY, Sun Y (2009) Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation. Plant Physiol 151:1889–1901
Zhao YD (2008) The role of local biosynthesis of auxin and cytokinin in plant development. Curr Opin Plant Biol 11:16–22