Expression analysis of key auxin synthesis, transport, and metabolism genes in different young dwarfing apple trees

Chunhui Song1, Dong Zhang1, Jie Zhang1, Liwei Zheng1, Caiping Zhao1, Junsheng Ma1, Na An1, Mingyu Han1
1College of Horticulture, Northwest A & F University, Yangling, China

Tóm tắt

Từ khóa


Tài liệu tham khảo

Alvarez R, Nissen SJ, Sutter EG (1989) Relationship between indole-3-acetic acid levels in apple (Malus pumila Mill) rootstocks cultured in vitro and adventitious root formation in the presence of indole-3-butyric acid. Plant Physiol 89:439–443

Atkinson C, Else M, Taylor L, Dover C (2003) Root and stem hydraulic conductivity as determinants of growth potential in grafted trees of apple (Malus pumila Mill.). J Exp Bot 54:1221–1229

Blakeslee JJ, Peer WA, Murphy AS (2005) Auxin transport. Curr Opin Plant Biol 8:494–500

Chandler JW (2009) Auxin as compère in plant hormone crosstalk. Planta 231:1–12

Chen Q, Dai X, De-Paoli H, Cheng Y, Takebayashi Y, Kasahara H, Kamiya Y, Zhao Y (2014) Auxin overproduction in shoots cannot rescue auxin deficiencies in Arabidopsis roots. Plant Cell Physiol 55:1072–1079

Cornille A, Giraud T, Smulders MJ, Roldán-Ruiz I, Gladieux P (2014) The domestication and evolutionary ecology of apples. Trends Genet 30:57–65

Dal Bosco C, Dovzhenko A, Liu X, Woerner N, Rensch T, Eismann M, Eimer S, Hegermann J, Paponov IA, Ruperti B, Heberle-Bors E, Touraev A, Cohen JD, Palme K (2012) The endoplasmic reticulum localized PIN8 is a pollen-specific auxin carrier involved in intracellular auxin homeostasis. Plant J 71:860–870

Dal Cin V, Velasco R, Ramina A (2009) Dominance induction of fruitlet shedding in Malus × domestica (L Borkh): molecular changes associated with polar auxin transport. BMC Plant Biol 9:139

Ding X, Cao Y, Huang L, Zhao J, Xu C, Li X, Wang S (2008) Activation of the indole-3-acetic acid-amido synthetase GH3-8 suppresses expansin expression and promotes salicylate- and jasmonate-independent basal immunity in rice. Plant Cell 20:228–240

Ding Z, Wang B, Moreno I, Duplakova N, Simon S, Carraro N, Reemmer J, Pencik A, Chen X, Tejos R, Skupa P, Pollmann S, Mravec J, Petrasek J, Zazimalova E, Honys D, Rolcik J, Murphy A, Orellana A, Geisler M, Friml J (2012) ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development in Arabidopsis. Nat Commun 3:941

Dobrev PI, Kamínek M (2002) Fast and efficient separation of cytokinins from auxin and abscisic acid and their purification using mixed-mode solid-phase extraction. J Chromatogr A 950:21–29

Dobrev PI, Havlíček L, Vágner M, Malbeck J, Kamínek M (2005) Purification and determination of plant hormones auxin and abscisic acid using solid phase extraction and two-dimensional high performance liquid chromatography. J Chromatogr A 1075:159–166

Mount DW  (2007) Using the Basic Local Alignment Search Tool (BLAST). CSH Protoc 2007

Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M (2014) Pfam: the protein families database. Nucleic Acids Res 42:D222–D2230

Gur A, Samish R (1968) The role of auxins and auxin destruction in the vigor effect induced by various apple rootstocks. Beitrage Biol Pfl 45:91–111 (bibl. 47)

Hedden P (2003) The genes of the Green Revolution. Trends Genet 19:5–9

Jung S, Ficklin SP, Lee T, Cheng CH, Blenda A, Zheng P, Yu J, Bombarely A, Cho I, Ru S, Evans K, Peace C, Abbott AG, Mueller LA, Olmstead MA, Main D (2014) The Genome Database for Rosaceae (GDR): year 10 update. Nucleic Acids Res 42:D1237–D1244

Kamboj JS, Quinlan JD (1998) The apple rootstock and its influence on endogenous hormones. Acta Hortic 463:143–152

Krecek P, Skupa P, Libus J, Naramoto S, Tejos R, Friml J, Zazimalova E (2009) The PIN-FORMED (PIN) protein family of auxin transporters. Genome Biol 10

Lauri PE, Maguylo K, Trottier C (2006) Architecture and size relations: an essay on the apple (Malus × domestica, Rosaceae) tree. Am J Bot 93:357–368

Leclere S, Tellez R, Rampey RA, Matsuda SPT, Bartel B (2002) Characterization of a family of IAA-amino acid conjugate hydrolases from Arabidopsis. J Biol Chem 277:20446–20452

Letunic I, Doerks T, Bork P (2012) SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res 40:D302–D305

Li LC, Qin GJ, Tsuge T, Hou XH, Ding MY, Aoyama T, Oka A, Chen Z, Gu H, Zhao Y, Qu LJ (2008) SPOROCYTELESS modulates YUCCA expression to regulate the development of lateral organs in Arabidopsis. New Phytol 179:751–764

Lochard R, Schneider G (1981) Stock and scion growth relationships and the dwarfing mechanism in apple. Hortic Rev 3:315–375

Mano Y, Nemoto K (2012) The pathway of auxin biosynthesis in plants. J Exp Bot 63:2853–2872

Mashiguchi K, Tanaka K, Sakai T, Sugawara S, Kawaide H, Natsume M, Hanada A, Yaeno T, Shirasu K, Yao H, McSteen P, Zhao YD, Hayashi K, Kamiya Y, Kasahara H (2011) The main auxin biosynthesis pathway in Arabidopsis. Proc Natl Acad Sci USA 108:18512–18517

Michalczuk L (2002) Indole-3-acetic acid level in wood, bark and cambial sap of apple rootstocks differing in growth vigour. Acta Physiol Plant 24:131–136

Mravec J, Skupa P, Bailly A, Hoyerova K, Krecek P, Bielach A, Petrasek J, Zhang J, Gaykova V, Stierhof YD, Dobrev PI, Schwarzerova K, Rolcik J, Seifertova D, Luschnig C, Benkova E, Zazimalova E, Geisler M, Friml J (2009) Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter. Nature 459:1136–1140

Ostrowski M, Jakubowska A (2008) Identification of enzyme activity that conjugates indole-3-acetic acid to aspartate in immature seeds of pea (Pisum sativum). J Plant Physiol 165(5):564–569

Ostrowski M, Jakubowska A (2011) Purification and biochemical characterization of indole-3-acetyl-aspartic acid synthetase from immature seeds of pea (Pisum sativum). J Plant Growth Regul 30(1):30–40

Rampey RA, LeClere S, Kowalczyk M, Ljung K, Sandberg G, Bartel B (2004) A family of auxin-conjugate hydrolases that contributes to free indole-3-acetic acid levels during Arabidopsis germination. Plant Physiol 135:978–988

Robinson T, Aldwinckle H, Fazio G, Holleran T (2002) The Geneva series of apple rootstocks from Cornell: performance, disease resistance, and commercialization, In: XXVI international horticultural congress: genetics and breeding of tree fruits and nuts, vol 622, pp 513–520

Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34:374–378

Seleznyova AN, Thorp TG, White M, Tustin S, Costes E (2003) Application of architectural analysis and AMAPmod methodology to study dwarfing phenomenon: the branch structure of ‘Royal Gala’ apple grafted on dwarfing and non-dwarfing rootstock/interstock combinations. Ann Bot 91:665–672

Seleznyova AN, Tustin DS, Thorp TG (2008) Apple dwarfing rootstocks and interstocks affect the type of growth units produced during the annual growth cycle: precocious transition to flowering affects the composition and vigour of annual shoots. Ann Bot 101:679–687

Shehata SAM, El-Shraiy AM (2010) Regulating cucumber grafting by interactions of cytokinins in xylem exudates of rootstock and basipetal polar auxin transport of scion at graft union. Aust J Basic Appl Sci 4:6179–6184

Singh Kamboj J, Quinlan JD (1997) The apple rootstock and its influence on endogenous hormones. In: VIII international symposium on plant bioregulation in fruit production, vol 463, pp 143–152

Soejima J, Yoshida Y, Haniuda T, Bessho H, Tsuchiya S, Masuda T, Komori S, Sanada T, Ito Y, Sadamori S (2010) New dwarfing apple rootstocks ‘JM1’, ‘JM7’ and ‘JM8’. Bull Natl Inst Fruit Tree Sci 11:1–16

Soumelidou K, Battey N, John P, Barnett J (1994a) The anatomy of the developing bud union and its relationship to dwarfing in apple. Ann Bot 74:605–611

Soumelidou K, Morris D, Battey N, Barnett J, John P (1994b) Auxin transport capacity in relation to the dwarfing effect of apple rootstocks. J Hortic Sci 69:719–725

Spiess GM, Hausman A, Yu P, Cohen JD, Rampey RA, Zolman BK (2014) Auxin input pathway disruptions are mitigated by changes in auxin biosynthetic gene expression in Arabidopsis. Plant Physiol 165:1092–1104

Staswick PE, Serban B, Rowe M, Tiryaki I, Maldonado MT, Maldonado MC, Suza W (2005) Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Plant Cell 17(2):616–627

Van Hooijdonk B, Woolley D, Warrington I, Tustin D (2010) Initial alteration of scion architecture by dwarfing apple rootstocks may involve shoot–root–shoot signalling by auxin, gibberellin, and cytokinin. J Hortic Sci Biotechnol 85:59–65

Van Hooijdonk B, Woolley D, Warrington I, Tustin D (2011) Rootstocks modify scion architecture, endogenous hormones, and root growth of newly grafted ‘Royal Gala’ apple trees. J Am Soc Hortic Sci 136:93–102

Won C, Shen X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y (2011) Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci USA 108:18518–18523

Yildirim AN, Polat M, Dolgun O, Askin MA, Gokbayrak Z, San B (2010) Graft formation in some spur and vigorous apple varieties grafted on Ottawa 3 rootstock: a histological investigation. J Food Agric Environ 8:512–514

Yin H, Yan B, Sun J, Jia P, Zhang Z, Yan X, Chai J, Ren Z, Zheng G, Liu H (2012) Graft-union development: a delicate process that involves cell–cell communication between scion and stock for local auxin accumulation. J Exp Bot 63:4219–4232

Zagaja S (1980) Performance of two apple cultivars on P series dwarf rootstocks. In: Symposium on research and development on orchard and plantation systems, vol 114, pp 162–169

Zhang SW, Li CH, Cao J, Zhang YC, Zhang SQ, Xia YF, Sun DY, Sun Y (2009) Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation. Plant Physiol 151:1889–1901

Zhao YD (2008) The role of local biosynthesis of auxin and cytokinin in plant development. Curr Opin Plant Biol 11:16–22

Zhao Y (2010) Auxin biosynthesis and its role in plant development. Annu Rev Plant Biol 61:49–64

Zhao Y, Christensen SK, Fankhauser C, Cashman JR, Cohen JD, Weigel D, Chory J (2001) A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science 291:306–309