Experimental alteration of DNA methylation affects the phenotypic plasticity of ecologically relevant traits in Arabidopsis thaliana
Tóm tắt
Từ khóa
Tài liệu tham khảo
Berger SL (2007) The complex language of chromatin regulation during transcription. Nature 447:407–412
Burn JE, Bagnall DJ, Metzger JD, Dennis ES, Peacock WJ (1993) DNA methylation, vernalization, and the initiation of flowering. Proc Natl Acad Sci USA 90:287–291
Cervera MT, Ruiz-Garcia L, Martinez-Zapater JM (2002) Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genom 268:543–552
Chen ZJ (2007) Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annu Rev Plant Biol 58:377–406
Cubas P, Vincent C, Coen E (1999) An epigenetic mutation responsible for natural variation in floral symmetry. Nature 401:157–161
Endler JA (1986) Natural selection in the wild. Princeton University Press, Princeton
Falconer DS, Mackay TFC (1996) Introduction to quantitative genetics. Pearson, Harlow
Felsenstein J (2005) PHYLIP version 3.6. Distributed by the author, Department of Genome Sciences, University of Washington
Fieldes MA (1994) Heritable effects of 5-azacytidine treatments on the growth and development of flax (Linum usitatissimum) genotrophs and genotypes. Genome 37:1–11
Fieldes MA, Amyot LM (1999a) Evaluating the potential of using 5-Azacytidine as an epimutagen. Can J Bot 77:1617–1622
Fieldes MA, Amyot LM (1999b) Epigenetic control of the early flowering in flax lines induced by 5-Azacytidine applied to germinating seeds. J Hered 90:199–206
Fieldes MA, Schaeffer SM, Krech MJ, Brown JCL (2005) DNA hypomethylation in 5-azacytidine-induced early-flowering lines of flax. Theor Appl Genet 111:136–149
Finnegan EJ, Peacock WJ, Dennis ES (1996) Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc Natl Acad Sci USA 93:8449–8454
Finnegan EJ, Genger RK, Kovac K, Peacock WJ, Dennis ES (1998) DNA methylation and the promotion of flowering by vernalization. Proc Natl Acad Sci USA 95:5824–5829
Genger RK, Peacock WJ, Dennis ES, Finnegan EJ (2003) Opposing effects of reduced DNA methylation on flowering time in Arabidopsis thaliana. Planta 216:461–466
Goslee SC, Urban DL (2007) The ecodist package for dissimilarity-based analysis of ecological data. J Stat Softw 22:7 ( www.jstatsoft.org )
Grant-Downton RT, Dickinson HG (2005) Epigenetics and its implications for plant biology. 1. The epigenetic network in plants. Ann Bot 96:1143–1164
Grant-Downton RT, Dickinson HG (2006) Epigenetics and its implications for plant biology. 2. The ‘epigenetic epiphany’: epigenetics, evolution and beyond. Ann Bot 97:11–27
Jablonka E, Lamb MJ (2005) Evolution in Four Dimensions. MIT Press, Cambridge
Johannes F, Colot V, Jansen RC (2008) Epigenome dynamics: a quantitative genetics perspective. Nature Rev Genet 9:883–890
Johannes F, Porcher E, Teixeira FK, Saliba-Colombani V, Simon M, Agier N, Bulski A, Albuisson J, Heredia F, Audigier P, Bouchez D, Dillmann C, Guerche P, Hospital F, Colot V (2009) Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet 5:e1000530
Kalisz S, Purugganan MD (2004) Epialleles via DNA methylation: consequences for plant evolution. Trends Ecol Evol 19:309–314
Keyte AL, Percifield R, Liu B, Wendel JF (2006) Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). J Hered 97:444–450
Kondo H, Miura T, Wada KC, Takeno K (2007) Induction of flowering by 5-azacytidine in some plant species: relationship between the stability of photoperiodically induced flowering and flower-inducing effect of DNA demethylation. Physiol Plant 131:462–469
Koornneef M, Alonso-Blanco C, Vreugdenhil D (2004) Naturally occurring genetic variation in Arabidopsis thaliana. Annu Rev Plant Biol 55:141–172
Linhart YB, Grant MC (1996) Evolutionary significance of local differentiation in plants. Annu Rev Ecol Syst 27:237–277
Liu B, Wendel JF (2003) Epigenetic phenomena and the evolution of plant allopolyploids. Mol Phylogenet Evol 29:365–379
Meyerowitz EM, Somerville CR (2002) The Arabidopsis book. American Society of Plant Biologists, Rockville. Available from http://www.aspb.org/publications/arabidopsis/
Miller GE (1991) Asymptotic test statistics for coefficients of variation. Commun Stat Theor M 20:3351–3363
Mitchell-Olds T (2001) Arabidopsis thaliana and its wild relatives: a model system for ecology and evolution. Trends Ecol Evol 16:693–700
Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA (2003) Understanding mechanisms of novel gene expression in polyploids. Trends Genet 19:141–147
Richards EJ (2006) Inherited epigenetic variation–revisiting soft inheritance. Nature Rev Genet 7:395–401
Riddle NC, Richards EJ (2002) The control of natural variation in cytosine methylation in Arabidopsis. Genetics 162:355–363
Tatra GS, Miranda J, Chinnappa CC, Reid DM (2000) Effect of light quality and 5-azacytidine on genomic methylation and stem elongation in two ecotypes of Stellaria longipes. Physiol Plant 109:313–321
R Development Core Team (2007) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. Available from http://R-project.org
Vaughn MW, Tanurdzic M, Lippman Z, Jiang H, Carrasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA (2007) Epigenetic natural variation in Arabidopsis thaliana. PLoS Biol 5:e174