Evolutionary biogeography on Ophiocordyceps sinensis: An indicator of molecular phylogeny to geochronological and ecological exchanges

Geoscience Frontiers - Tập 11 - Trang 807-820 - 2020
Yongdong Dai1, Changkui Wu1, Feng Yuan1, Yuanbing Wang1,2, Luodong Huang1, Zihong Chen1, Wenbo Zeng1, Yao Wang1, Zhuliang Yang3, Pusheng Zeng4, Paul Lemetti1, Xuanxue Mo5, Hong Yu1
1Yunnan Herbal Laboratory, Institute of Herb Biotic Resources, School of Life Sciences, Yunnan University, Kunming, Yunnan Province 650091, China
2Yunnan Herbal Biotech Co., Ltd, Kunming, Yunnan Province 650203, China
3Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan Province 650201, China
4National Research Center for Geoanalysis, Beijing, 100037, China
5School of Earth Sciences and Resources, China University of Geosciences (Beijing), Beijing 100083, China

Tài liệu tham khảo

Bandelt, 1999, Median-joining networks for inferring intraspecific phylogenies, Mol. Biol. Evol., 16, 37, 10.1093/oxfordjournals.molbev.a026036 Beimforde, 2014, Estimating the Phanerozoic history of the Ascomycota lineages: combining fossil and molecular data, Mol. Phylogenetics Evol., 78, 386, 10.1016/j.ympev.2014.04.024 Bouckaert, 2014, Beast 2: a software platform for Bayesian evolutionary analysis, PLoS Comput. Biol., 10, 10.1371/journal.pcbi.1003537 Cerling, 1993, Expansion of C4 ecosystems as an indicator of global ecological change in the late Miocene, Nature, 361, 344, 10.1038/361344a0 Chen, 2017, Evidence for two types of nrDNA existing in Chinese medicinal fungus Ophiocordyceps sinensis, AIMS Genetics, 4, 192, 10.3934/genet.2017.3.192 Chen, 1992, Hengduan event, an important tectonic event of the late Cenozic in Eastern Asia, Mt. Res., 10, 195 Chen, 1996, Second discussion of the Hengduan movement, Volcanol. Miner. Resour., 17, 14 Chen, 1999, Genetic diversity and taxonomic implication of Cordyceps sinensis as revealed by RAPD markers, Biochem. Genet., 37, 201, 10.1023/A:1018738706123 Chen, 2004, Genetic variation of Cordyceps sinensis, a fruit-body-producing entomopathogenic species from different geographical regions in China, FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Lett., 230, 153, 10.1016/S0378-1097(03)00889-9 Dai, 2019, Phylogeographic structures of the host insects of Ophiocordyceps sinensis, Zoology, 134, 27, 10.1016/j.zool.2019.03.003 Excoffier, 2007, Arlequin (version 3.0), an integrated software package for population genetics data analysis, Evol. Bioinf. Online, 1, 47 Excoffier, 2004, Patterns of DNA sequence diversity and genetic structure after a range expansion:lessons from the infinite-island model, Mol. Ecol., 13, 853, 10.1046/j.1365-294X.2003.02004.x Fu, 1997, Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection, Genetics, 147, 915, 10.1093/genetics/147.2.915 Hao, 2009, Genetic differentiation and distributing pattern of Cordyceps sinensis in China revealed by rDNA ITS sequences, Chin. Tradit. Herb. Drugs, 40, 112 Harrison, 1992, Raising Tibet, Science, 255, 1663, 10.1126/science.255.5052.1663 Hou, 2017, Development and evaluation of a rapid PCR detection kit for Ophiocordyceps sinensis, China J. Chin. Mater. Med., 1125 Hu, 2013, Genome survey uncovers the secrets of sex and lifestyle in caterpillar fungus, Chin. Sci. Bull., 58, 2846, 10.1007/s11434-013-5929-5 Hughes, 2010, Ancient death-grip leaf scars reveal Ant-fungal parasitism, Biol. Lett., 7, 67, 10.1098/rsbl.2010.0521 Jin, 2013, Development of conventional and nested PCR assays for the detection of Ophiocordyceps sinensis, J. Basic Microbiol., 53, 340, 10.1002/jobm.201200029 Kashyap, 2016, Cordyceps, A natural Himalayan viagra with promising aphrodisiac potential, Austin Androl., 1, 1010 Katoh, 2002, MAFFT, a novel method for rapid multiple sequence alignment based on fast fourier transform, Nucleic Acids Res., 30, 3059, 10.1093/nar/gkf436 Kinjo, 2001, Morphological and phylogenetic studies on Cordyceps sinensis distributed in southwestern China, Mycoscience, 42, 567, 10.1007/BF02460956 Kumar, 2016, MEGA7, molecular evolutionary genetics analysis version 7.0 for bigger datasets, Mol. Biol. Evol., 33, 1870, 10.1093/molbev/msw054 Li, 1998, Research on the uplift of Qinghai-Tibet Plateau and its environment change, Chin. Sci. Bull., 43, 1569 Li, 2001, Late Cenozoic intensive uplift of Qinghai-Xizang plateau and its impacts on environments in surrounding area, Quat. Sci., 21, 381 Li, 1997, Late Cenozoic magnetostratigraphy (11-0 Ma) of the Dongshanding and Wangjiashan sections in the Longzhong Basin, Western China, Geol. Mijnb., 76, 121, 10.1023/A:1003153717799 Li, 2017, Research progress of host insects of Cordyceps and its raising technique, World Chin. Med., 12, 3142 Li, 2011, A survey of the geographic distribution of Ophiocordyceps sinensis, J. Microbiol., 49, 913 Li, 2013, Non-concerted ITS evolution in fungi, as revealed from the important medicinal fungus Ophiocordyceps sinensis, Mol. Phylogenetics Evol., 68, 373, 10.1016/j.ympev.2013.04.010 Li, 2017, rRNA pseudogenes in filamentous ascomycetes as revealed by genome data, G3: Genes, Genomes, Genetics, 7, 2695, 10.1534/g3.117.044016 Li, 2016, Synergy of fungal complexes isolated from the intestines of Hepialus lagii larvae in increasing infection potency, J. Fungal Res., 14, 96 Li, 1991, Classification and correlation of the Quaternary glacial epoch in the Hengduan (transverse) mountains, Geol. Rev., 37, 125 Liang, 2008, Genetic diversity and structure of Cordyceps sinensis populations from extensive geographical regions in China as revealed by inter-simple sequence repeat markers, J. Microbiol., 46, 549 Liang, 2005, Genetic variation and affinity of Cordyceps sinensis in Qinghai province based on analysis of morphologic characters and inter-simple sequence repeat markers, Chin. Tradit. Herb. Drugs, 36, 1859 Librado, 2009, DnaSP v5, a software for comprehensive analysis of DNA polymorphism data, Bioinformatics, 25, 1451, 10.1093/bioinformatics/btp187 Liu, 2017, Detection of Ophiocordyceps sinensis and Its Common Adulterates Using Species-Specific Primers, Front. Microbiol. Lo, 2013, A systematic review of the mysterious caterpillar fungus Ophiocordyceps sinensis in DongChongXiaCao and related bioactive ingredients, J. Tradit., Complementary Med., 3, 16, 10.1016/S2225-4110(16)30164-X Lücking, 2009, Fungi evolved right on track, Mycologia, 10, 810, 10.3852/09-016 Mo, 2010, A review and prospect of geological researches on the Qinghai-Tibet Plateau, Chin. Geol., 37, 841 Negi, 2016, Conserving the caterpillar fungus [(Ophiocordyceps sinensis Berk.) G. H. Sung et al.], a case study of habitat ecology and sustainability in district pithoragarh, western Himalaya, Int. J. Biodivers. Conserv., 8, 196, 10.5897/IJBC2014.0742 Pandey, 2010, Genetic diversity among the isolates of Cordyceps sinensis of higher Himalayan meadows of India, Int. J. Mol. Sci., 1, 242 Pons, 1996, Measuring and testing genetic differentiation with ordered versus unordered alleles, Genetics, 144, 1237, 10.1093/genetics/144.3.1237 Posada, 2001, Selecting the best-fit model of nucleotide substitution, Syst. Biol., 50, 580, 10.1080/106351501750435121 Qiu, 2015, The advance of the host insects of Ophiocordyceps sinensis in China, Lishizhen Medicine and Materia Medica Research, 26, 720 Quade, 1989, Development of Asian monsoon revealed by marked ecological shift during the latest Miocene in northern Pakistan, Nature, 342, 163, 10.1038/342163a0 Quan, 2014, Comparative phylogenetic relationships and genetic structure of the caterpillar fungus Ophiocordyceps sinensis and its host insects inferred from multiple gene sequences, J. Microbiol., 52, 99 Rambaut, 2009 Rogers, 1988, 1 Ronquist, 2012, Mrbayes 3.2, efficient bayesian phylogenetic inference and model choice across a large model space, Syst. Biol., 61, 539, 10.1093/sysbio/sys029 Shalik, 2017, Habitat ecology of Ophiocordyceps sinensis in western Nepal, Mt. Res. Dev., 37, 216, 10.1659/MRD-JOURNAL-D-16-00075.1 Shrestha, 2010, What is the Chinese caterpillar fungus Ophiocordyceps sinensis (Ophiocordycipitaceae)?, Mycology, 1, 228, 10.1080/21501203.2010.536791 Shrestha, 2014, Impact of climate change on potential distribution of Chinese caterpillar fungus (Ophiocordyceps sinensis) in Nepal Himalaya, PLoS One, 9, 10.1371/journal.pone.0106405 Singh, 2009, Genetic variability assessment in medicinal caterpillar fungi Cordyceps spp. (Ascomycetes) in Central Himalayas, India, Int. J. Med. Mushrooms, 11, 185, 10.1615/IntJMedMushr.v11.i2.70 Spatafora, 2006, A five-gene phylogeny of Pezizomycotina, Mycologia, 98, 1018, 10.1080/15572536.2006.11832630 Sung, 2007, Phylogenetic classification of Cordyceps and the clavicipitaceous fungi, Stud. Mycol., 57, 5, 10.3114/sim.2007.57.01 Sung, 2008, The oldest fossil evidence of animal parasitism by fungi supports a Cretaceous diversification of fungal-arthropod symbioses, Mol. Phylogenetics Evol., 49, 495, 10.1016/j.ympev.2008.08.028 Wang, 2011, Host insect species of Ophiocordyceps sinensis: a review, ZooKeys, 127, 43, 10.3897/zookeys.127.802 White, 1990, Applification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315 Winkler, 2008, Yartsa Gunbu (Cordyceps sinensis) and the fungal commodification of Tibet’s rural economy, Econ. Bot., 62, 291, 10.1007/s12231-008-9038-3 Wu, 2018, Gut commensal Parabacteroides goldsteinii plays a predominant role in the anti-obesity effects of polysaccharides isolated from Hirsutella sinensis, Gut Xia, 2017, The caterpillar fungus, Ophiocordyceps sinensis, genome provides insights into highland adaptation of fungal pathogenicity, Sci. Rep., 7, 1806, 10.1038/s41598-017-01869-z Xiang, 2013, DNA barcoding the commercial Chinese caterpillar fungus, FEMS (Fed. Eur. Microbiol. Soc.) Microbiol. Lett., 347, 156 Xie, 2011, RAPD and analysis of ITS sequences of Ophiocordyceps sinensis in Gansu, Chin. J. Microecol., 23, 219 Xing, 2017, Uplift-driven diversification in the Hengduan mountains, a temperate biodiversity hotspot, Proc. Natl. Acad. Sci. U. S. A, 114, E3444, 10.1073/pnas.1616063114 Yan, 2017, Range shifts in response to climate change of Ophiocordyceps sinensis, a fungus endemic to the Tibetan Plateau, Biol. Conserv., 206, 143, 10.1016/j.biocon.2016.12.023 Yuan, 2015 Zang, 1982, Notes concerning the subdivision of Cordyceps and a new species from China, Acta Bot. Yunnanica, 4, 173 Zhang, 2012, Ophiocordyceps sinensis, the flagship fungus of China, terminology, life strategy and ecology, Mycology, 3, 2 Zhang, 2009, Genetic diversity of Ophiocordyceps sinensis, a medicinal fungus endemic to the Tibetan Plateau: implications for its evolution and conservation, BMC Evol. Biol., 9, 290, 10.1186/1471-2148-9-290 Zhang, 2014, Phylogeography and evolution of a fungal-insect association on the Tibetan Plateau, Mol. Ecol., 23, 5337, 10.1111/mec.12940 Zhang, 1999, Study of genetic divergence in Cordyceps sinensis and C. crassispora from northwest of Yunnan by using RAPD, Mycosystema, 18, 176 Zhong, 2014, Detection of Ophiocordyceps sinensis in the roots of plants in alpine meadows by nested-touchdown polymerase chain reaction, Fungal Biology, 118, 359, 10.1016/j.funbio.2013.12.005 Zhong, 2010, rDNA-targeted PCR primers and FISH probe in the detection of Ophiocordyceps sinensis hyphae and conidia, J. Microbiol. Methods, 83, 188, 10.1016/j.mimet.2010.08.020 Zhou, 2009, Cordyceps fungi: natural products, pharmacological functions and developmental products, J. Pharm. Pharmacol., 61, 279, 10.1211/jpp.61.03.0002 Zhu, 2011, Genetic diversity of Ophiocordyceps sinensis in Gansu Province based on inter-simple sequence repeat (ISSR) analyses, Mycosystema, 30, 501 Zhu, 2010, Maturational alterations of oppositely orientated rDNA and differential proliferations of CG: AT-biased genotypes of Cordyceps sinensis fungi and Paecilomyces hepiali in natural Cordyceps sinensis, Am. J. Biomed. Life Sci., 2, 217, 10.5099/aj100300217