Bằng chứng về hoạt động vi sinh vật tại chỗ và quá trình sulfide hóa trong các trầm tích muối cao và dưới 0 °C của một nguồn nước băng vĩnh cửu tại Bắc Cực

Adams MM, Hoarfrost AL, Bose A, Joye SB, Girguis PR (2013) Anaerobic oxidation of short-chain alkanes in hydrothermal sediments: potential influences on sulfur cycling and microbial diversity. Front Microbiol 14(4):110 Aleev RS, Voronov VG, Ismagilova ZF, Safin RR, Ismagilov FR (2002) Scrubbing hydrogen sulfide from gases. A rational approach. Chem Technol Fuels Oils 38:260–265 Allen CC, Oehler DZ (2008) A case for ancient springs in Arabia Terra. Mars Astrobiology 8:1093–1112 Andersen DT, Pollard WH, McKay CP, Heldmann J (2002) Cold springs in permafrost on Earth and Mars. J Geophys Res-Planets 107(E3):1–4 Baker GC, Smith JJ, Cowan DA (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55:541–555 Battler MM, Osinski GR, Banerjee NR (2013) Mineralogy of saline perennial cold springs on Axel Heiberg Island. Nunavut, Canada and implications for spring deposits on Mars Icarus 224:364–381 Bell TH, E-D Hassan S, Lauron-Moreau A, Al-Otaibi F, Hijri M, Yergeau E, St-Arnaud M (2013) Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny ISME J Berges JA, Franklin DJ, Harrison PJ (2001) Evolution of an artificial seawater medium: improvements in enriched seawater, artificial water over the last two decades. J Phycol 37:1138–1145 Blazewicz SJ, Barnard RL, Daly RA, Firestone MK (2013) Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. ISME J 7:2061–2068 Borin S, Crotti E, Mapelli F, Tamagnini I, Corselli C, Daffonchio D (2008) DNA is preserved and maintains transforming potential after contact with brines of the deep anoxic hypersaline lakes of the Eastern Mediterranean Sea. Saline Syst 4:1–9 Burggraf S, Huber H, Stetter KO (1997) Reclassification of the crenarchaeal orders and families in accordance with 16S rRNA sequence data. Int J Syst Bacteriol 47:657–660 Campbell BJ, Kirchman DL (2013) Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient. ISME J 7:210–220 Campbell BJ, Yu L, Heidelberg JF, Kirchman DL (2011) Activity of abundant and rare bacteria in a coastal ocean. Proc Natl Acad Sci 108:12776–12781 Charvet S, Vincent WF, Comeau AM, Lovejoy C (2012) Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change Frontiers in Microbiology 3 Cheng L, Ding C, Li Q, He Q, Dai L-r, Zhang H (2013) DNA-SIP reveals that Syntrophaceae play an important role in methanogenic hexadecane degradation. PLoS One 8:e66784 Cline JD (1969) Spectrophotometric determination of hydrogen sulfide in natural waters. Limnol Oceanogr 14:454–458 Coolen MJL, Cypionka H, Sass AM, Sass H, Overmann J (2002) Ongoing modification of Mediterranean Pleistocene sapropels mediated by prokaryotes. Science 296:2407–2410 Costello EK, Schmidt SK (2006) Microbial diversity in alpine tundra wet meadow soil: novel Chloroflexi from a cold, water-saturated environment. Environ Microbiol 8:1471–1486 Cramm R (2009) Genomic view of energy metabolism in Ralstonia eutropha H16. J Mol Microbiol Biotechnol 16:38–52 Cui H-L, Lin Z-Y, Dong Y, Zhou P-J, Liu S-J (2007) Halorubrum litoreum sp. nov., an extremely halophilic archaeon from a solar saltern. Int J Syst Evol Microbiol 57:2204–2206 Davila AF et al (2010) Hygroscopic salts and the potential for life on Mars. Astrobiology 10:617–629 DeMaere MZ et al (2013) High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake. Proc Natl Acad Sci 110:16939–16944 Des Marais DJ et al (2008) The NASA astrobiology roadmap. Astrobiology 8:715–730 Doran PT, Fritsen CH, McKay CP, Priscu JC, Adams EE (2003) Formation and character of an ancient 19-m ice cover and underlying trapped brine in an “ice-sealed” east Antarctic lake. Proc Natl Acad Sci 100:26–31 Embree M, Nagarajan H, Movahedi N, Chitsaz H, Zengler K (2013) Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community ISME J Gendrin A et al (2005) Sulfates in martian layered terrains: the OMEGA/Mars express view. Science 307:1587–1591 Gleeson DF, Williamson C, Grasby SE, Pappalardo RT, Spear JR, Templeton AS (2011) Low temperature S(0) biomineralization at a supraglacial spring system in the Canadian High Arctic. Geobiology 9:360–375 Godon J-J, Morinière J, Moletta M, Gaillac M, Bru V, Delgènes J-P (2005) Rarity associated with specific ecological niches in the bacterial world: the ‘Synergistes’ example. Environ Microbiol 7:213–224 Goordial J, Lamarche-Gagnon G, Lay C-Y, Whyte L (2013) Left out in the cold: life in cryoenvironments. In: Seckbach J, Oren A, Stan-Lotter H (eds) Polyextremophiles, vol 27., Cellular Originm, life in extreme habitats and astrobiologySpringer, Netherlands, pp 335–363 Handl S, Dowd SE, Garcia-Mazcorro JF, Steiner JM, Suchodolski JS (2011) Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats. FEMS Microbiol Ecol 76:301–310 Harrison BK, Zhang H, Berelson W, Orphan VJ (2009) Variations in archaeal and bacterial diversity associated with the sulfate-methane transition zone in continental margin sediments (Santa Barbara Basin, California). Appl Environ Microbiol 75:1487–1499 Hezayen FF, Tindall BJ, Steinbüchel A, Rehm BHA (2002) Characterization of a novel halophilic archaeon, Halobiforma haloterrestris gen. nov., sp. nov., and transfer of Natronobacterium nitratireducens to Halobiforma nitratireducens comb. nov. Int J Syst Evol Microbiol 52:2271–2280 Hurtgen MT, Arthur MA, Suits NS, Kaufman AJ (2002) The sulfur isotopic composition of Neoproterozoic seawater sulfate: implications for a snowball Earth? Earth Planet Sci Lett 203:413–429 Lay C-Y, Mykytczuk N, Niederberger T, Martineau C, Greer C, Whyte L (2012) Microbial diversity and activity in hypersaline high Arctic spring channels. Extremophiles 16:177–191 Lay C-Y, Mykytczuk NCS, Yergeau É, Lamarche-Gagnon G, Greer CW, Whyte LG (2013) Defining the functional potential and active community members of a sediment microbial community in a high-arctic hypersaline subzero spring. Appl Environ Microbiol 79:3637–3648 Magot M et al (1997) Dethiosulfovibrio peptidovorans gen. nov., sp. nov., a New Anaerobic, Slightly halophilic, thiosulfate-reducing bacterium from corroding offshore oil wells. Int J Syst Bacteriol 47:818–824 Magot M, Ollivier B, Patel BC (2000) Microbiology of petroleum reservoirs Antonie van Leeuwenhoek 77:103–116 Margesin R, Miteva V (2011) Diversity and ecology of psychrophilic microorganisms. Res Microbiol 162:346–361 McCord TB, Orlando TM, Teeter G, Hansen GB, Sieger MT, Petrik NG, Van Keulen L (2001) Thermal and radiation stability of the hydrated salt minerals epsomite, mirabilite, and natron under Europa environmental conditions. J Geophys Res Planets 106:3311–3319 McKay C, Mykytczuk N, Whyte L (2012) Life in ice on other worlds. In: Miller RV, Whyte LG (eds) Polar microbiology: life in deep freeze. ASM Press, Washington, DC, pp 290–304 Murray AE et al (2012) Microbial life at −13 and #xB0;C in the brine of an ice-sealed Antarctic lake. Proc Natl Acad Sci 109:20626–20631 Niederberger TD et al (2010) Microbial characterization of a subzero, hypersaline methane seep in the Canadian High Arctic. ISME J 4:1326–1339 Oren A (2011) Thermodynamic limits to microbial life at high salt concentrations. Environ Microbiol 13:1908–1923 Oren A, Ventosa A, Grant WD (1997) Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47:233–238 Osterloo MM, Anderson FS, Hamilton VE, Hynek BM (2010) Geologic context of proposed chloride-bearing materials on Mars. J Geophys Res 115:E10012 Ozcan B, Cokmus C, Coleri A, Caliskan M (2006) Characterization of extremely halophilic Archaea isolated from saline environment in different parts of Turkey. Microbiology 75:739–746 Pohlmann A et al (2006) Genome sequence of the bioplastic-producing Knallgas bacterium Ralstonia eutropha H16. Nat Biotech 24:1257–1262 Pollard WH (2005) Icing processes associated with high Arctic perennial springs, Axel Heiberg Island, Nunavut, Canada. Permafr Periglac Processes 16:51–68 Priscu JC, Christner BC (2004) Earth’s icy biosphere. Microb Divers Prospect:130-145 Rafikov SR, Aleev RS, Masagutov RM, Danilov VT, Dal’nova YS (1982) Reaction of formaldehyde with hydrogen sulfide. Russ Chem Bull 31:1452–1453 Robador A, Brüchert V, Jørgensen BB (2009) The impact of temperature change on the activity and community composition of sulfate-reducing bacteria in arctic versus temperate marine sediments. Environ Microbiol 11:1692–1703 Rossi AP et al (2008) Large-scale spring deposits on Mars? J Geophys Res 113:E08016 Samarkin VA, Madigan MT, Bowles MW, Casciotti KL, Priscu JC, McKay CP, Joye SB (2010) Abiotic nitrous oxide emission from the hypersaline Don Juan Pond in Antarctica. Nat Geosci 3:341–344 Sassen R, Roberts HH, Carney R, Milkov AV, DeFreitas DA, Lanoil B, Zhang C (2004) Free hydrocarbon gas, gas hydrate, and authigenic minerals in chemosynthetic communities of the northern Gulf of Mexico continental slope: relation to microbial processes. Chem Geol 205:195–217 Schloss PD et al (2009) Introducing mothur: open-Source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537–7541 Schloss PD, Gevers D, Westcott SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6:e27310 Sorokin DY, Muyzer G (2010) Desulfurispira natronophila gen. nov. sp. nov.: an obligately anaerobic dissimilatory sulfur-reducing bacterium from soda lakes. Extremophiles 14:349–355 Steven B, Niederberger TD, Bottos EM, Dyen MR, Whyte LG (2007) Development of a sensitive radiorespiration method for detecting microbial activity at subzero temperatures. J Microbiol Methods 71:275–280 Steven B, Niederberger T, Whyte L (2009) Bacterial and archaeal diversity in permafrost. In: Margesin R (ed) Permafrost soils, vol 16., Soil BiologySpringer, Heidelberg, pp 59–72 Surkov AV, Dubinina GA, Lysenko AM, Glöckner FO, Kuever J (2001) Dethiosulfovibrio russensis sp. nov., Dethosulfovibrio marinus sp. nov. and Dethosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from ‘Thiodendron’ sulfur mats in different saline environments. Int J Syst Evol Microbiol 51:327–337 Tarpgaard I, Boetius A, Finster K (2006) Desulfobacter psychrotolerans sp. nov., a new psychrotolerant sulfate-reducing bacterium and descriptions of its physiological response to temperature changes. Antonie Van Leeuwenhoek 89:109–124 Tehei M, Franzetti B, Maurel M-C, Vergne J, Hountondji C, Zaccai G (2002) The search for traces of life: the protective effect of salt on biological macromolecules. Extremophiles 6:427–430 Tomlinson GA, Jahnke LL, Hochstein LI (1986) Halobacterium denitrificans sp. nov., an extremely halophilic denitrifying bacterium. Int J Syst Bacteriol 36:66–70 Treude T, Orphan V, Knittel K, Gieseke A, House CH, Boetius A (2007) Consumption of methane and CO2 by methanotrophic microbial mats from gas seeps of the anoxic Black Sea. Appl Environ Microbiol 73:2271–2283 Westrich JT, Berner RA (1988) The effect of temperature on rates of sulfate reduction in marine sediments. Geomicrobiol J 6:99–117 Yamada T, Imachi H, Ohashi A, Harada H, Hanada S, Kamagata Y, Sekiguchi Y (2007) Bellilinea caldifistulae gen. nov., sp. nov. and Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia. Int J Syst Evol Microbiol 57:2299–2306 Zhang L, De Gusseme B, De Schryver P, Mendoza L, Marzorati M, Verstraete W (2009) Decreasing sulfide generation in sewage by dosing formaldehyde and its derivatives under anaerobic conditions. Water Sci Technol 59:1248–1254