Evidence linking calcium to increased organo-mineral association in soils

Austin N, Evans B, Herwegh M, Ebert A (2008) Strain localization in the Morcles nappe (Helvetic Alps, Switzerland). Swiss J Geosci 101(2):341–360

Bahram M, Hildebrand F, Forslund SK, Anderson JL, Soudzilovskaia NA, Bodegom PM, Bengtsson-Palme J, Anslan S, Coelho LP, Harend H, Huerta-Cepas J, Medema MH, Maltz MR, Mundra S, Olsson PA, Pent M, Põlme S, Sunagawa S, Ryberg M, Tedersoo L, Bork P (2018) Structure and function of the global topsoil microbiome. Nature 560(7717):233–237

Barreto MSC, Elzinga EJ, Ramlogan M, Rouff AA, Alleoni LRF (2020) Calcium enhances adsorption and thermal stability of organic compounds on soil minerals. Chem Geol, 119804.

Beerling DJ, Kantzas EP, Lomas MR, Wade P, Eufrasio RM, Renforth P, Sarkar B, Andrews MG, James RH, Pearce CR, Mercure J-F, Pollitt H, Holden PB, Edwards NR, Khanna M, Koh L, Quegan S, Pidgeon NF, Janssens IA, Hansen J, Banwart SA (2020) Potential for large-scale CO2 removal via enhanced rock weathering with croplands. Nature 583(7815):242–248

Blagodatskaya EV, Anderson T-H (1999) Adaptive responses of soil microbial communities under experimental acid stress in controlled laboratory studies. Appl Soil Ecol 11(2–3):207–216

Blanco-Moure N, Angurel LA, Moret-Fernández D, López MV (2012a) Tensile strength and organic carbon of soil aggregates under long-term no tillage in semiarid Aragon (NE Spain). Geoderma 189–190:423–430

Blanco-Moure N, Moret-Fernández D, López MV (2012b) Dynamics of aggregate destabilization by water in soils under long-term conservation tillage in semiarid Spain. CATENA 99:34–41

Blankinship J, Berhe A, Crow S, Druhan J, Heckman K, Keiluweit M, Lawrence C, Marin-Spiotta E, Plante A, Rasmussen C, Schädel C, Schimel J, Sierra C, Thompson A, Wagai R, Wieder W (2018) Improving understanding of soil organic matter dynamics by triangulating theories, measurements, and models. Biogeochemistry 140:1–13

Boiteau RM, Kukkadapu R, Cliff JB, Smallwood CR, Kovarik L, Wirth MG, Engelhard MH, Varga T, Dohnalkova A, Perea DE, Wietsma T, Moran JJ, Hofmockel KS (2020). Calcareous organic matter coatings sequester siderophores in alkaline soils. Sci Total Environ 138250.

Boström B, Comstedt D, Ekblad A (2007) Isotope fractionation and 13C enrichment in soil profiles during the decomposition of soil organic matter. Oecologia 153(1):89–98

Bradford MA, Crowther TW (2013) Carbon use efficiency and storage in terrestrial ecosystems. New Phytol 199:7–9. https://doi.org/10.1111/nph.12334

Ceperley N, Zuecco G, Beria H, Carturan L, Michelon A, Penna D, Larsen J, Schaefli B (2020). Seasonal snow cover decreases young water fractions in high Alpine catchments. Hydrol Process

Chenu C (1989) Influence of a fungal polysaccharide, scleroglucan, on clay microstructures. Soil Biol Biochem 21(2):299–305

Chenu C, Cosentino D (2011) Microbial regulation of soil structural dynamics. In: K. Ritz, I.M. Young (Eds.), The architecture and biology of soils: life in inner space. CABI, pp. 37–70.

Coplen TB (2011) Guidelines and recommended terms for expression of stable-isotope-ratio and gas-ratio measurement results. Rapid Commun Mass Spectrom 25(17):2538–2560

De Stasio G, Schmitt MA, Gellman SH (2005) Spectromicroscopy at the organic-inorganic interface in biominerals. Am J Sci 305(6–8):673

Demri B, Muster D (1995) XPS study of some calcium compounds. J Mater Process Technol 55(3):311–314

Dengis PB, Gerin PA, Rouxhet PG (1995) X-ray photoelectron spectroscopy analysis of biosurfaces: examination of performances with yeast cells and related model compounds. Colloids Surf, B 4(4):199–211

Disnar JR, Guillet B, Keravis D, Di-Giovanni C, Sebag D (2003) Soil organic matter (SOM) characterization by Rock-Eval pyrolysis: scope and limitations. Org Geochem 34(3):327–343

Edwards AP, Bremner JM (1967) Microaggregates in soil. J Soil Sci 18(1):64

Fernández-Ugalde O, Virto I, Barré P, Apesteguía M, Enrique A, Imaz MJ, Bescansa P (2014) Mechanisms of macroaggregate stabilisation by carbonates: implications for organic matter protection in semi-arid calcareous soils. Soil Res 52(2):180–192

Fernández-Ugalde O, Virto I, Barré P, Gartzia-Bengoetxea N, Enrique A, Imaz MJ, Bescansa P (2011) Effect of carbonates on the hierarchical model of aggregation in calcareous semi-arid Mediterranean soils. Geoderma 164(3–4):203–214

Gadd GM (2010) Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology (Reading) 156(Pt 3):609–643. https://doi.org/10.1099/mic.0.037143-0. https://pubmed.ncbi.nlm.nih.gov/20019082/

Galecki A, Burzykowski T (2015) Linear mixed-effects models using R: a step-by-step approach. Springer, New York

Golchin A, Oades JM, Skjemstad JO, Clarke P (1994) Study of free and occluded particulate organic matter in soils by solid-state c-13 CP/MAS NMR-spectroscopy and scanning electron-microscopy. Aust J Soil Res 32(2):285–309

Grand S, Rubin A, Verrecchia EP, Vittoz P (2016) Variation in soil respiration across soil and vegetation types in an alpine valley. PLoS ONE 11(9):e0163968

Harris D, Horwath WR, van Kessel C (2001) Acid fumigation of soils to remove carbonates prior to total organic carbon or carbon-13 isotopic analysis. Soil Sci Soc Am J 65(6):1853–1856

Hasinger O, Spangenberg JE, Millière L, Bindschedler S, Cailleau G, Verrecchia EP (2015) Carbon dioxide in scree slope deposits: a pathway from atmosphere to pedogenic carbonate. Geoderma 247–248:129–139

Hobbie EA, Macko SA, Shugart HH (1999) Insights into nitrogen and carbon dynamics of ectomycorrhizal and saprotrophic fungi from isotopic evidence. Oecologia 118(3):353–360

IUSS Working Group WRB, 2015. World reference base for soil resources 2014, update 2015. No 106. FAO, Rome

Jones E, Singh B (2014) Organo-mineral interactions in contrasting soils under natural vegetation. Front Environ Sci 2(2).

Kaiser K (1998) Fractionation of dissolved organic matter affected by polyvalent metal cations. Org Geochem 28(12):849–854

Kaiser M, Berhe AA (2014) How does sonication affect the mineral and organic constituents of soil aggregates?-A review. J Plant Nutr Soil Sci 177(4):479–495

Kaiser M, Ghezzehei TA, Kleber M, Myrold DD, Berhe AA (2014) Influence of calcium carbonate and charcoal applications on organic matter storage in silt-sized aggregates formed during a microcosm experiment. Soil Sci Soc Am J 78(5):1624–1631

Kalinichev AG, Kirkpatrick RJ (2007) Molecular dynamics simulation of cationic complexation with natural organic matter. Eur J Soil Sci 58(4):909–917

Kleber M, Lehmann J (2019) Humic substances extracted by alkali are invalid proxies for the dynamics and functions of organic matter in terrestrial and aquatic ecosystems. J Environ Qual 48(2):207–216

Kögel-Knabner I, Guggenberger G, Kleber M, Kandeler E, Kalbitz K, Scheu S, Eusterhues K, Leinweber P (2008) Organo-mineral associations in temperate soils: integrating biology, mineralogy, and organic matter chemistry. J Plant Nutr Soil Sci 171(1):61–82

Kramer MG, Chadwick OA (2018) Climate-driven thresholds in reactive mineral retention of soil carbon at the global scale. Nat Climate Change 8(12):1104–1108

Lehmann J, Kleber M (2015) The contentious nature of soil organic matter. Nature 528(7580):60–68

Malou OP, Sebag D, Moulin P, Chevallier T, Badiane-Ndour NY, Thiam A, Chapuis-Lardy L (2020) The Rock-Eval® signature of soil organic carbon in arenosols of the Senegalese groundnut basin. How do agricultural practices matter? Agric Ecosyst Environ 301:107030

Martí-Roura M, Hagedorn F, Rovira P, Romanyà J (2019) Effect of land use and carbonates on organic matter stabilization and microbial communities in Mediterranean soils. Geoderma 351:103–115

Matteodo M, Grand S, Sebag D, Rowley MC, Vittoz P, Verrecchia EP (2018) Decoupling of topsoil and subsoil controls on organic matter dynamics in the Swiss Alps. Geoderma 330:41–51

McKeague JA, Day DH (1966) Dithionite- and oxalate-extractable Fe and Al as aids in differentiating various classes of soils. Can J Soil Sci 46(1):13–000

Mikutta R, Schaumann GE, Gildemeister D, Bonneville S, Kramer MG, Chorover J, Chadwick OA, Guggenberger G (2009) Biogeochemistry of mineral–organic associations across a long-term mineralogical soil gradient (03–4100kyr) Hawaiian Islands. Geochim Cosmochim Acta 73(7):2034–2060

Minasny B, Malone BP, McBratney AB, Angers DA, Arrouays D, Chambers A, Chaplot V, Chen Z-S, Cheng K, Das BS, Field DJ, Gimona A, Hedley CB, Hong SY, Mandal B, Marchant BP, Martin M, McConkey BG, Mulder VL, O’Rourke S, Richer-de-Forges AC, Odeh I, Padarian J, Paustian K, Pan G, Poggio L, Savin I, Stolbovoy V, Stockmann U, Sulaeman Y, Tsui C-C, Vågen T-G, van Wesemael B, Winowiecki L (2017) Soil carbon 4 per mille. Geoderma 292:59–86

Minick, K.J., Fisk, M.C., Groffman, P.M., 2017. Soil Ca alters processes contributing to C and N retention in the Oa/A horizon of a northern hardwood forest. Biogeochemistry, 1–15.

Moulder, J.F., Chastain, J., 1992. Handbook of X-ray photoelectron spectroscopy: A reference book of standard spectra for identification and interpretation of XPS data. Physical Electronics Division, Perkin-Elmer Corporation

Muneer M, Oades JM (1989a) The role of Ca-organic interactions in soil aggregate stability. 2. Field studies with C-14-labelled straw, CaCO3 AND CaSO42H2O. Aust J Soil Res 27(2):401–409

Muneer M, Oades JM (1989b) The role of Ca-organic interactions in soil aggregate stability. 3. Mechanisms and models. Aust J Soil Res 27(2):411–423

North PF (1976) Towards an absolute measurement of soil structural stability using ultrasound. J Soil Sci 27(4):451–459

Oades JM (1984) Soil organic matter and structural stability: mechanisms and implications for management. Plant Soil 76(1/3):319–337

Oades JM (1988) The retention of organic matter in soils. Biogeochemistry 5(1):35–70

Paradelo R, van Oort F, Barre P, Billiou D, Chenu C (2016) Soil organic matter stabilization at the pluri-decadal scale: Insight from bare fallow soils with contrasting physicochemical properties and macrostructures. Geoderma 275:48–54

Parfitt RL, Childs CW (1988) Estimation of forms of Fe and Al: a review, and analysis of contrasting soils by dissolution and mossbauer methods. Aust J Soil Res 26(1):121–144

Plante AF, Fernández JM, Leifeld J (2009) Application of thermal analysis techniques in soil science. Geoderma 153(1):1–10

Plaschke M, Rothe J, Altmaier M, Denecke MA, Fanghänel T (2005) Near edge X-ray absorption fine structure (NEXAFS) of model compounds for the humic acid/actinide ion interaction. J Electron Spectrosc Relat Phenom 148(3):151–157

Poeplau C, Don A, Six J, Kaiser M, Benbi D, Chenu C, Cotrufo MF, Derrien D, Gioacchini P, Grand S, Gregorich E, Griepentrog M, Gunina A, Haddix M, Kuzyakov Y, Kühnel A, Macdonald L, Soong J, Trigalet S, Nieder R (2018) Isolating organic carbon fractions with varying turnover rates in temperate agricultural soils – A comprehensive method comparison. Soil Biol Biochem 125:10–26

Poeplau C, Vos C, Don A (2017) Soil organic carbon stocks are systematically overestimated by misuse of the parameters bulk density and rock fragment content. SOIL 3(1):61–66

Prietzel J, Klysubun W, Hurtarte LCC (2020) The fate of calcium in temperate forest soils: a Ca K-edge XANES study. Biogeochemistry.

Rasmussen C, Heckman K, Wieder WR, Keiluweit M, Lawrence CR, Berhe AA, Blankinship JC, Crow SE, Druhan JL, Hicks Pries CE, Marin-Spiotta E, Plante AF, Schädel C, Schimel JP, Sierra CA, Thompson A, Wagai R (2018) Beyond clay: towards an improved set of variables for predicting soil organic matter content. Biogeochemistry 137(3):297–306

Römkens PFAM, Dolfing J (1998) Effect of Ca on the solubility and molecular size distribution of DOC and Cu binding in soil solution samples. Environ Sci Technol 32(3):363–369

Rousk J, Baath E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N (2010) Soil bacterial and fungal communities across a pH gradient in an arable soil. Int Soc Microbial Ecol J 4(10):1340–1351

Rousk J, Brookes PC, Baath E (2009) Contrasting soil pH effects on fungal and bacterial growth suggest functional redundancy in carbon mineralization. Appl Environ Microbiol 75(6):1589–1596

Rovira P, Casals P, Romanyà J, Bottner P, Coûteaux M-M, Ramon Vallejo V (1998) Recovery of fresh debris of different sizes in density fractions of two contrasting soils. Eur J Soil Biol 34(1):31–37

Rowley MC, Grand S, Adatte T, Verrecchia EP (2020) A cascading influence of calcium carbonate on the biogeochemistry and pedogenic trajectories of subalpine soils. Switzerland Geoderma 361:114065

Rowley MC, Grand S, Verrecchia ÉP (2018) Calcium-mediated stabilisation of soil organic carbon. Biogeochemistry 137(1):27–49

Sanderman J, Grandy AS (2020) Ramped thermal analysis for isolating biologically meaningful soil organic matter fractions with distinct residence times. Soil 6(1):131–144

Satterthwaite FE (1946) An approximate distribution of estimates of variance components. Biometr Bull 2(6):110–114

Schmidt MWI, Rumpel C, Kögel-Knabner I (1999) Evaluation of an ultrasonic dispersion procedure to isolate primary organomineral complexes from soils. Eur J Soil Sci 50(1):87–94

Schrumpf M, Kaiser K, Guggenberger G, Persson T, Koegel-Knabner I, Schulze ED (2013) Storage and stability of organic carbon in soils as related to depth, occlusion within aggregates, and attachment to minerals. Biogeosciences 10(3):1675–1691

Schwertmann U, Fechter H (1982) The point of zero charge of natural and synthetic ferrihydrites and its relation to adsorbed silicate. Clay Miner 17(4):471–476

Sebag D, Disnar JR, Guillet B, Di Giovanni C, Verrecchia EP, Durand A (2006) Monitoring organic matter dynamics in soil profiles by “Rock-Eval pyrolysis”: bulk characterization and quantification of degradation. Eur J Soil Sci 57(3):344–355

Sebag D, Verrecchia EP, Cécillon L, Adatte T, Albrecht R, Aubert M, Bureau F, Cailleau G, Copard Y, Decaens T, Disnar JR, Hetényi M, Nyilas T, Trombino L (2016) Dynamics of soil organic matter based on new Rock-Eval indices. Geoderma 284:185–203

Soares M, Rousk J (2019) Microbial growth and carbon use efficiency in soil: Links to fungal-bacterial dominance, SOC-quality and stoichiometry. Soil Biol Biochem 131:195–205

Sowers T, Adhikari D, Wang J, Yang Y, Sparks DL (2018a) Spatial associations and chemical composition of organic carbon sequestered in Fe, Ca, and organic carbon ternary systems. Environ Sci Technol 52(12):6936–6944

Sowers TD, Stuckey JW, Sparks DL (2018b) The synergistic effect of calcium on organic carbon sequestration to ferrihydrite. Geochem Trans 19:4

Sutton R, Sposito G, Diallo MS, Schulten H-R (2005) Molecular simulation of a model of dissolved organic matter. Environ Toxicol Chem 24(8):1902–1911

Thompson A, Rancourt DG, Chadwick OA, Chorover J (2011) Iron solid-phase differentiation along a redox gradient in basaltic soils. Geochim Cosmochim Acta 75(1):119–133

Thoumazeau A, Chevallier T, Baron V, Rakotondrazafy N, Panklang P, Marichal R, Kibblewhite M, Sebag D, Tivet F, Bessou C, Gay F, Brauman A (2020) A new in-field indicator to assess the impact of land management on soil carbon dynamics. Geoderma 375:114496

Torn MS, Trumbore SE, Chadwick OA, Vitousek PM, Hendricks DM (1997) Mineral control of soil organic carbon storage and turnover. Nature 389(6647):170–173

Viret F, Grand S (2019) Combined size and density fractionation of soils for investigations of organo-mineral interactions. J Visual Exp (144).

Virto I, Barré P, Enrique A, Poch RM, Fernández-Ugalde O, Imaz MJ, Bescansa P (2013) Micromorphological analysis on the influence of the soil mineral composition on short-term aggregation in semi-arid Mediterranean soils. Span J Soil Sci 3(2):116–129

Vittoz P, Gmür P (2008) Introduction aux Journées de la biodiversité dans le Vallon de Nant. In: A.-C.P. Clot, D. Cherix, F. Dessimox, J.-L. Gattolliat, P. Gmür, P. Vittoz, M. Vust (Eds.), Biodiversité du Vallon de Nant Premières Journées de la biodiversité en Suisse romande (5 et 6 juillet, 2008) Mémoire Vol 23. Société vaudoise des Sciences naturelles, Vaud, Switzerland.

Vogel C, Mueller CW, Hoeschen C, Buegger F, Heister K, Schulz S, Schloter M, Kögel-Knabner I (2014) Submicron structures provide preferential spots for carbon and nitrogen sequestration in soils. Nat Commun 5(2947):1–7

Vormstein S, Kaiser M, Piepho HP, Ludwig B (2020) Aggregate formation and organo-mineral association affect characteristics of soil organic matter across soil horizons and parent materials in temperate broadleaf forest. Biogeochemistry 148(2):169–189

Webster R (2007) Analysis of variance, inference, multiple comparisons and sampling effects in soil research. Eur J Soil Sci 58(1):74–82

Wen L, Li D, Chen H, Wang K (2017) Dynamics of soil organic carbon in density fractions during post-agricultural succession over two lithology types, southwest China. J Environ Manage 201:199–206

Yang S, Jansen B, Absalah S, Hall R, Kalbitz K, Cammeraat ELH (2020) Lithology- and climate-controlled soil aggregate-size distribution and organic carbon stability in the Peruvian Andes. SOIL 6:1–15

Yeasmin S, Singh B, Johnston CT, Sparks DL (2017) Organic carbon characteristics in density fractions of soils with contrasting mineralogies. Geochim Cosmochim Acta 218:215–236

Yuan G, Soma M, Seyama H, Theng BKG, Lavkulich LM, Takamatsu T (1998) Assessing the surface composition of soil particles from some Podzolic soils by X-ray photoelectron spectroscopy. Geoderma 86(3):169–181

Zemek J, Olejnik K, Klapetek P (2008) Photoelectron spectroscopy from randomly corrugated surfaces. Surf Sci 602(7):1440–1446