Evaluation of the Illumina ForenSeq™ DNA Signature Prep Kit – MPS forensic application for the MiSeq FGx™ benchtop sequencer

Scheible, 2014, Short tandem repeat typing on the 454 platform: strategies and considerations for targeted sequencing of common forensic markers, Forensic Sci. Int. Genet., 12, 107, 10.1016/j.fsigen.2014.04.010 Gettings, 2016, Sequence variation of 22 autosomal STR loci detected by next generation sequencing, Forensic Sci. Int. Genet., 21, 15, 10.1016/j.fsigen.2015.11.005 Ma, 2016, Next generation sequencing: improved resolution for paternal/maternal duos analysis, Forensic Sci. Int. Genet., 24, 83, 10.1016/j.fsigen.2016.05.015 Guo, 2016, Evaluation of the early access STR kit v1 on the ion torrent PGM™ platform, Forensic Sci. Int. Genet., 23, 111, 10.1016/j.fsigen.2016.04.004 Kim, 2016, Massively parallel sequencing of 17 commonly used forensic autosomal STRs and amelogenin with small amplicons, Forensic Sci. Int. Genet., 22, 1, 10.1016/j.fsigen.2016.01.001 Fordyce, 2015, Second-generation sequencing of forensic STRs using the ion torrent™ HID STR 10-plex and the ion PGM™, Forensic Sci. Int. Genet., 14, 132, 10.1016/j.fsigen.2014.09.020 van der Gaag, 2016, Massively parallel sequencing of short tandem repeats—population data and mixture analysis results for the PowerSeq™ system, Forensic Sci. Int. Genet., 24, 86, 10.1016/j.fsigen.2016.05.016 Børsting, 2015, Next generation sequencing and its applications in forensic genetics, Forensic Sci. Int. Genet., 18, 78, 10.1016/j.fsigen.2015.02.002 Wendt, 2016, Genetic analysis of the Yavapai Native Americans from West-Central Arizona using the illumina MiSeq FGx™ forensic genomics system, Forensic Sci. Int. Genet., 24, 18, 10.1016/j.fsigen.2016.05.008 Churchill, 2016, Evaluation of the Illumina® beta version ForenSeq™ DNA signature prep kit for use in genetic profiling, Forensic Sci. Int. Genet., 20, 20, 10.1016/j.fsigen.2015.09.009 Just, 2017, Performance and concordance of the ForenSeq™ System for autosomal and Y chromosome short tandem repeat sequencing of reference-type specimens, Forensic Sci. Int. Genet., 28, 1, 10.1016/j.fsigen.2017.01.001 Silvia, 2017, A preliminary assessment of the ForenSeq™ FGx System: next generation sequencing of an STR and SNP multiplex, Int. J. Legal Med., 131, 73, 10.1007/s00414-016-1457-6 Wendt, 2016, Massively parallel sequencing of 68 insertion/deletion markers identifies novel microhaplotypes for utility in human identity testing, Forensic Sci. Int. Genet., 25, 198, 10.1016/j.fsigen.2016.09.005 Phillips, 2014, Building a forensic ancestry panel from the ground up: the EUROFORGEN Global AIM-SNP set, Forensic Sci. Int. Genet., 11, 13, 10.1016/j.fsigen.2014.02.012 Daniel, 2015, A SNaPshot of next generation sequencing for forensic SNP analysis, Forensic Sci. Int. Genet., 14, 50, 10.1016/j.fsigen.2014.08.013 Gettings, 2015, Performance of a next generation sequencing SNP assay on degraded DNA, Forensic Sci. Int. Genet., 19, 1, 10.1016/j.fsigen.2015.04.010 Eduardoff, 2015, Inter-laboratory evaluation of SNP-based forensic identification by massively parallel sequencing using the Ion PGM™, Forensic Sci. Int. Genet., 17, 110, 10.1016/j.fsigen.2015.04.007 Parson, 2013, Evaluation of next generation mtGenome sequencing using the ion torrent personal genome machine (PGM), Forensic Sci. Int. Genet., 7, 543, 10.1016/j.fsigen.2013.06.003 McElhoe, 2014, Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq, Forensic Sci. Int. Genet., 13, 20, 10.1016/j.fsigen.2014.05.007 King, 2014, High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq, Forensic Sci. Int. Genet., 12, 128, 10.1016/j.fsigen.2014.06.001 Parson, 2015, Massively parallel sequencing of complete mitochondrial genomes from hair shaft samples, Forensic Sci. Int. Genet., 15, 8, 10.1016/j.fsigen.2014.11.009 Zhou, 2016, Strategies for complete mitochondrial genome sequencing on Ion Torrent PGM™ platform in forensic sciences, Forensic Sci. Int. Genet., 22, 11, 10.1016/j.fsigen.2016.01.004 Peck, 2016, Concordance and reproducibility of a next generation mtGenome sequencing method for high-quality samples using the Illumina MiSeq, Forensic Sci. Int. Genet., 24, 103, 10.1016/j.fsigen.2016.06.003 Brenig, 2010, Shotgun metagenomics of biological stains using ultra-deep DNA sequencing, Forensic Sci. Int. Genet., 4, 228, 10.1016/j.fsigen.2009.10.001 Skonieczna, 2015, Heteroplasmic substitutions in the entire mitochondrial genomes of human colon cells detected by ultra-deep 454 sequencing, Forensic Sci. Int. Genet., 15, 16, 10.1016/j.fsigen.2014.10.021 Mikkelsen, 2014, Massively parallel pyrosequencing of the mitochondrial genome with the 454 methodology in forensic genetics, Forensic Sci. Int. Genet., 12, 30, 10.1016/j.fsigen.2014.03.014 Parson, 2016, Massively parallel sequencing of forensic STRs: considerations of the DNA commission of the International Society for Forensic Genetics (ISFG) on minimal nomenclature requirements, Forensic Sci. Int. Genet., 22, 54, 10.1016/j.fsigen.2016.01.009 Novroski, 2016, Characterization of genetic sequence variation of 58 STR loci in four major population groups, Forensic Sci. Int. Genet., 25, 214, 10.1016/j.fsigen.2016.09.007 Illumina, 2015 Niederstätter, 2007, A modular real-time PCR concept for determining the quantity and quality of human nuclear and mitochondrial DNA, Forensic Sci. Int. Genet., 1, 29, 10.1016/j.fsigen.2006.10.007 Bauer, 2013, Comparison of morphological and molecular genetic sex-typing on mediaeval human skeletal remains, Forensic Sci. Int. Genet., 7, 581, 10.1016/j.fsigen.2013.05.005 Illumina, 2015 White, 2015, Development and validation of a rapid PCR method for the PowerPlex® 16 HS system for forensic DNA identification, Int. J. Legal Med., 129, 715, 10.1007/s00414-014-1102-1 Ensenberger, 2010, Developmental validation of the PowerPlex® 16 HS system: an improved 16-locus fluorescent STR multiplex, Forensic Sci. Int. Genet., 4, 257, 10.1016/j.fsigen.2009.10.007 Ensenberger, 2014, Developmental validation of the PowerPlex® 21 system, Forensic Sci. Int. Genet., 9, 169, 10.1016/j.fsigen.2013.12.005 Oostdik, 2014, Developmental validation of the PowerPlex® Fusion System for analysis of casework and reference samples: a 24-locus multiplex for new database standards, Forensic Sci. Int. Genet., 12, 69, 10.1016/j.fsigen.2014.04.013 Hennessy, 2014, Developmental validation of the GlobalFiler® express kit, a 24-marker STR assay, on the RapidHIT® System, Forensic Sci. Int. Genet., 13, 247, 10.1016/j.fsigen.2014.08.011 Musgrave-Brown, 2007, Forensic validation of the SNPforID 52-plex assay, Forensic Sci. Int. Genet., 1, 186, 10.1016/j.fsigen.2007.01.004 Bodner, 2016, Recommendations of the DNA commission of the International Society for Forensic Genetics (ISFG) on quality control of autosomal Short Tandem Repeat allele frequency databasing (STRidER), Forensic Sci. Int. Genet., 24, 97, 10.1016/j.fsigen.2016.06.008 Hantschel, 1999, Population genetics of nine short tandem repeat (STR) loci –DNA typing using the AmpFlSTR Profiler PCR amplification kit, Int. J. Legal Med., 112, 393, 10.1007/s004140050022 Amigo, 2009, Viability of in-house datamarting approaches for population genetics analysis of SNP genotypes, BMC Bioinf., 10, S5, 10.1186/1471-2105-10-S3-S5 Amigo, 2008, SPSmart: adapting population based SNP genotype databases for fast and comprehensive web access, BMC Bioinf., 9, 1, 10.1186/1471-2105-9-428