Evaluation of associations between genotypes of Mycobacterium avium subsp. paratuberculsis and presence of intestinal lesions characteristic of paratuberculosis

Veterinary Microbiology - Tập 201 - Trang 188-194 - 2017
Petra Möbius1, Elisabeth Liebler-Tenorio1, Martin Hölzer2, Heike Köhler1
1Friedrich-Loeffler-Institut (Federal Research Institute for Animal Health), Institute of Molecular Pathogenesis, 07743 Jena, Naumburger Str. 96a, Germany
2Friedrich Schiller University Jena, Faculty of Mathematics and Computer Science, RNA Bioinformatics and High Throughput Analysis, 07743 Jena, Leutragraben 1, Germany

Tài liệu tham khảo

Ahlstrom, 2015, Limitations of variable number of tandem repeat typing identified through whole genome sequencing of Mycobacterium avium subsp. paratuberculosis on a national and herd level, BMC Genom., 16, 161, 10.1186/s12864-015-1387-6 Barlett, 1989, Nucleotide sequence of IS492, a novel insertion sequence causing variation in extracellular polysaccharide production in the marine bacterium Pseudomonas atlantica, J. Bacteriol., 17, 1763, 10.1128/jb.171.3.1763-1766.1989 Biet, 2012, Inter- and intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strains, BMC Microbiol., 12, 264, 10.1186/1471-2180-12-264 Borrmann, 2011, Divergent cytokine responses of macrophages to Mycobacterium avium subsp. paratuberculosis strains of types II and III in a standardized in vitro model, Vet. Microbiol., 152, 101, 10.1016/j.vetmic.2011.04.002 Bryant, 2016, Phylogenetic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis, BMC Genom., 17, 79, 10.1186/s12864-015-2234-5 Buergelt, 1978, Pathological evaluation of paratuberculosis in naturally infected cattle, Vet. Pathol., 15, 196, 10.1177/030098587801500206 Bull, 2000, Characterization of IS900 loci in Mycobacterium avium subsp. paratuberculosis and development of multiplex PCR typing, Microbiology, 146, 2185, 10.1099/00221287-146-9-2185 Bull, 2013, Genome variations associated with attenuation in Mycobacterium avium subsp paratuberculosis vaccine strains, BMC Microbiol., 13, 11, 10.1186/1471-2180-13-11 Castellanos, 2009, Discovery of stable and variable differences in the Mycobacterium avium subsp. paratuberculosis type I II, and III genomes by pan-genome microarray analysis, Appl. Environ. Microbiol., 75, 676, 10.1128/AEM.01683-08 Castellanos, 2012, A 16kb naturally occurring genomic deletion including mce and PPE genes in Mycobacterium avium subspecies paratuberculosis isolates from goats with Johne's disease, Vet. Microbiol., 159, 60, 10.1016/j.vetmic.2012.03.010 Collins, 1990, Identification of two groups of Mycobacterium paratuberculosis strains by restriction endonuclease analysis and DNA hybridization, J. Clin. Microbiol., 28, 1591, 10.1128/JCM.28.7.1591-1596.1990 Coscolla, 2014, Consequences of genomic diversity in Mycobacterium tuberculosis, Semin. Immunol., 26, 431, 10.1016/j.smim.2014.09.012 Cousins, 2000, DNA fingerprinting of Australian isolates of Mycobacterium avium subsp. paratuberculosis using IS900 RFLP, Aust. Vet. J., 78, 184, 10.1111/j.1751-0813.2000.tb10590.x De Juan, 2005, Genetic diversity of Mycobacterium avium subspecies paratuberculosis isolates from goats detected by pulsed-field gel electrophoresis, Vet. Microbiol., 106, 249, 10.1016/j.vetmic.2004.12.013 De Juan, 2006, Molecular epidemiology of types I/III strains of Mycobacterium avium subspecies paratuberculosis isolated from goats and cattle, Vet. Microbiol., 115, 102, 10.1016/j.vetmic.2006.01.008 De Juan, 2006, Molecular epidemiology of Types I/III strains of Mycobacterium avium subspecies paratuberculosis isolated from goats and cattle, Vet. Microbiol., 115, 102, 10.1016/j.vetmic.2006.01.008 Elze, 2013, Comparison of prevalence estimation of Mycobacterium avium subsp. paratuberculosis infection by sampling slaughtered cattle with macroscopic lesions vs. systematic sampling, Epidemiol. Infect., 141, 1536, 10.1017/S0950268812002452 Elze, 2009 Fritsch, 2012, Suspicion of Mycobacterium avium subsp. paratuberculosis transmission between cattle and wild-living red deer (Cervus elaphus) by multitarget genotyping, Appl. Environ. Microbiol., 78, 1132, 10.1128/AEM.06812-11 Gollnick, 2007, Survival of Mycobacterium avium subsp. paratuberculosis in bovine monocyte-derived macrophages is not affected by hosz infection status but depends on the infecting bacterial genotype, Vet. Immunol. Immunopathol., 120, 93, 10.1016/j.vetimm.2007.07.017 Gosh, 2012, Genome wide analysis of emerging infection with Mycobacterium avium subsp. paratuberculosis in the Arabian camels (Camelus dromedaries), PLOS One, 7, e31947, 10.1371/journal.pone.0031947 Janagama, 2006, Cytokine responses of bovine macrophages to diverse clinical Mycobacterium avium subspecies paratuberculosis strains, BMC Microbiol., 6, 10, 10.1186/1471-2180-6-10 Köhler, 2015, Characterization of a caprine model for the subclinical initial phase of Mycobacterium avium subsp. paratuberculosis infection, BMC Vet. Res., 11 Kasnitz, 2013, Stability of genotyping target sequences of Mycobacterium avium subsp. paratuberculosis upon cultivation on different media, in vitro- and in vivo passage and natural infection, Vet. Microbiol., 167, 573, 10.1016/j.vetmic.2013.09.008 López, 2003, A marked difference in pathogenesis and immune response induced by different Mycobacterium tuberculosis genotypes, Clin. Exp. Immunol., 133, 30, 10.1046/j.1365-2249.2003.02171.x Möbius, 2008, J. Clin. Microbiol., 46, 972, 10.1128/JCM.01801-07 Möbius, 2009, Unique genotypes of Mycobacterium avium subsp. paratuberculosis strains of Type III, Vet. Microbiol., 139, 398, 10.1016/j.vetmic.2009.06.011 Möbius, 2015, Comprehensive insights in the Mycobacterium avium subsp. paratuberculosis genome using new WGS data of sheep strain JIII-386 from Germany, Genome Biol. Evol., 7, 2585 Mackintosh, 2007, Experimental infections in young red deer (Cervus elaphus) with a bovine and an ovine strain of Mycobacterium avium subsp paratuberculosis, N. Zeal. Vet. J., 55, 23, 10.1080/00480169.2007.36731 Mahilloni, 1998, Insertion sequences, Microbiol. Mol. Biol. Rev., 62, 725, 10.1128/MMBR.62.3.725-774.1998 Ooka, 2009, Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes, Genome Res., 19, 1809, 10.1101/gr.089615.108 Pavlik, 1999, Standardisation of restriction fragment length polymorphism analysis for Mycobacterium avium subsp. paratuberculosis, J. Microbiol. Methods, 38, 155, 10.1016/S0167-7012(99)00091-3 Saunders, 2003, Identification f a new RFLP type of Mycobacterium avium subsp. paratuberculosis in epidemiological tracing of bovine Johne’s disease, Aust. Vet. J., 81, 564, 10.1111/j.1751-0813.2003.tb12888.x Sevilla, 2007, Pulsed-field gel electrophoresis profile homogeneity of Mycobacterium avium subsp. paratuberculosis isolates from cattle and heterogeneity of those from sheep and goats, BMC Microbiol., 7, 18, 10.1186/1471-2180-7-18 Stevenson, 2009, Occurrence of Mycobacterium avium subspecies paratuberculosis across host species and European countries with evidence for transmission between wildlife and domestic ruminants, BMC Microbiol., 9, 212, 10.1186/1471-2180-9-212 Stevenson, 2015, Genetic diversity of Mycobacterium avium subspecies paratuberculosis and the influence of strain type on infection and pathogenesis: a review, Vet. Res., 46, 64, 10.1186/s13567-015-0203-2 Stevenson, 2002, Molecular characterization of pigmented and nonpigmented isolates of Mycobacterium avium subsp. paratuberculosis, J. Clin. Microbiol., 40, 1798, 10.1128/JCM.40.5.1798-1804.2002 Thibault, 2007, New variable-number tandem-repeat markers for typing Mycobacterium avium subsp. paratuberculosis and M. avium strains: comparison with IS900 and IS1245 restriction fragment length polymorphism typing, J. Clin. Microbiol., 45, 2404, 10.1128/JCM.00476-07 Thibault, 2008, Combined multilocus short-sequence-repeat and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typing of Mycobacterium avium subsp. paratuberculosis isolates, J. Clin. Microbiol., 46, 4091, 10.1128/JCM.01349-08 Van Soolingen, 1991, Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: Evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of Tuberculosis, J. Clin. Microbiol., 29, 2578, 10.1128/JCM.29.11.2578-2586.1991 Verdugoa, 2014, Molecular epidemiology of Mycobacterium avium subsp. paratuberculosis isolated from sheep, cattle and deer on NewZealand pastoral farms, Prev. Vet. Med., 117, 436, 10.1016/j.prevetmed.2014.09.009 Verna, 2007, Variation in the immuno-pathological responses of lambs after experimental infection with different strains of Mycobacterium avium subsp. paratuberculosis, Zoonoses Public Health, 54, 243, 10.1111/j.1863-2378.2007.01058.x Whipple, 1990, Identification of restriction fragment length polymorphisms in DNA from Mycobacterium paratuberculosis, J. Clin. Microbiol., 28, 2561, 10.1128/JCM.28.11.2561-2564.1990 Whittington, 2000, Molecular epidemiology of Mycobacterium avium subsp. paratuberculosis: IS900 restriction fragment length polymorphism and IS1311 polymorphism analyses of isolates from animals and a human in Australia, J. Clin. Microbiol., 38, 3240, 10.1128/JCM.38.9.3240-3248.2000 Whittington, 2011, Culture phenotypes of genomically and geographically diverse Mycobacterium avium subsp. paratuberculosis isolates from different hosts, J. Clin. Microbiol., 49, 1822, 10.1128/JCM.00210-11