Estimation of physical and physiological performances of blacklip pearl oyster larvae in view of DEB modeling and recruitment assessment

Andréfouët, 2012 Asmani, 2017, Determination of stocking density limits for Crassostrea gigas larvae reared in flow-through and recirculating aquaculture systems and interaction between larval density and biofilm formation, Aquat. Living Resour., 30, 29, 10.1051/alr/2017023 Bates, 2017 Bayne, 1976 Bayne, 1983, Physiological energetics of marine molluscs, vol. 4, 407 Charpy, 1997, Particulate organic matter in sixteen Tuamotu atoll lagoons (French Polynesia), Mar. Ecol. Prog. Ser., 55, 10.3354/meps151055 Cole, 1937, Metamorphosis of the larva of Ostrea edulis, Nature, 139, 413, 10.1038/139413b0 Cole, 1938, The fate of the larval organs in the metamorphosis of Ostrea edulis, J. Mar. Biol. Assoc. United Kingdom, 22, 469, 10.1017/S0025315400012376 Cury, 1989, Optimal environmental window and pelagic fish recruitment success in upwelling areas, Can. J. Fish. Aquat. Sci., 46, 670, 10.1139/f89-086 Doroudi, 2000, The influence of algal ration and larval density on growth and survival of blacklip pearl oyster Pinctada margaritifera (L.) larvae, Aquac. Res., 31, 621 Doroudi, 2003, Embryonic and larval development of Pinctada margaritifera (Linnaeus, 1758), Molluscan Res., 23, 101, 10.1071/MR02015 Doroudi, 1999, The combined effects of temperature and salinity on embryos and larvae of the black-lip pearl oyster, Pinctada margaritifera (L.), Aquac. Res., 30, 271, 10.1046/j.1365-2109.1999.00324.x Doroudi, 1999, Growth and survival of blackslip pearl oyster larvae fed different densities of microalgae, Aquac. Int., 7, 179, 10.1023/A:1009207810808 Doroudi, 2003, Variation in clearance and ingestion rates by larvae of the black-lip pearl oyster (Pinctada margaritifera, L.) feeding on various microalgae, Aquac. Nutr., 9, 11, 10.1046/j.1365-2095.2003.00222.x Ehteshami, 2011, The effects of dietary supplements of polyunsaturated fatty acid on pearl oyster, Pinctada margaritifera L., gonad composition and reproductive output, Aquac. Res., 42, 613, 10.1111/j.1365-2109.2010.02658.x Fournier, 2011 Fournier, 2012, Pearl oysters Pinctada margaritifera grazing on natural plankton in Ahe atoll lagoon (Tuamotu archipelago, French Polynesia), Mar. Pollut. Bull., 65, 490, 10.1016/j.marpolbul.2012.03.026 Fox, 2012, Package ‘car’, Vienna R Found. Stat. Comput. Gerdes, 1983, The Pacific oyster Crassostrea gigas: part II. Oxygen consumption of larvae and adults, Aquaculture, 31, 221, 10.1016/0044-8486(83)90314-9 Gnaiger, 1983, Heat dissipation and energetic efficiency in animal anoxibiosis: economy contra power, J. Exp. Zool., 228, 471, 10.1002/jez.1402280308 González-Araya, 2011, A physiological and biochemical approach to selecting the ideal diet for Ostrea edulis (L.) broodstock conditioning (part a), Aquac. Res., 42, 710, 10.1111/j.1365-2109.2010.02731.x Grosberg, 1992, For adults only? Supply-side ecology and the history of larval biology, Trends Ecol. Evol., 7, 130, 10.1016/0169-5347(92)90148-5 Hamburger, 1983, Size, oxygen consumption and growth in the mussel Mytilus edulis, Mar. Biol., 75, 303, 10.1007/BF00406016 Hjort, 1926, Fluctuations in the year classes of important food fishes, ICES J. Mar. Sci., 1, 5, 10.1093/icesjms/1.1.5 Hofmann, 2009, Understanding how disease and environment combine to structure resistance in estuarine bivalve populations, Oceanography, 22, 212, 10.5670/oceanog.2009.110 Holland, 1973, Biochemical changes in fed and starved oysters, Ostrea edulis L. during larval development, metamorphosis and early spat growth, J. Mar. Biol. Assoc. United Kingdom, 53, 287, 10.1017/S002531540002227X Hothorn ISPF Jager, 2012, Simplified dynamic energy budget model for analysing ecotoxicity data, Ecol. Model., 225, 74, 10.1016/j.ecolmodel.2011.11.012 Jager, 2010, A biology-based approach for mixture toxicity of multiple endpoints over the life cycle, Ecotoxicology, 19, 351, 10.1007/s10646-009-0417-z Kooijman, 2010 Lenth, 2016, Least-squares means: the R package lsmeans, J. Stat. Softw., 69, 1, 10.18637/jss.v069.i01 Lika, 2011, The “covariation method” for estimating the parameters of the standard dynamic energy budget model I: philosophy and approach, J. Sea Res., 66, 270, 10.1016/j.seares.2011.07.010 Lüdecke, 2015 Marshall, 2009, Larval supply and dispersal, 165 Menge, 2009, Climatic variation alters supply-side ecology: impact of climate patterns on phytoplankton and mussel recruitment, Ecol. Monogr., 79, 379, 10.1890/08-2086.1 Moran, 2004, Physiological recovery from prolonged ‘starvation'in larvae of the Pacific oyster Crassostrea gigas, J. Exp. Mar. Bio. Ecol., 306, 17, 10.1016/j.jembe.2003.12.021 O'Connor, 2007, Temperature control of larval dispersal and the implications for marine ecology, evolution, and conservation, Proc. Natl. Acad. Sci. U. S. A., 104, 1266, 10.1073/pnas.0603422104 Olson, 1989, Food limitation of planktotrophic marine invertebrate larvae: does it control recruitment success?, Annu. Rev. Ecol. Syst., 20, 225, 10.1146/annurev.es.20.110189.001301 Pagano, 2017, Ocean-lagoon water and plankton exchanges in a semi-closed pearl farming atoll lagoon (Ahe, Tuamotu archipelago, French Polynesia), Estuar. Coast. Shelf Sci., 191, 60, 10.1016/j.ecss.2017.04.017 Pechenik, 1990, Delayed metamorphosis by larvae of benthic marine invertebrates: does it occur? Is there a price to pay?, Ophelia, 32, 63, 10.1080/00785236.1990.10422025 Pouvreau, 2001, Growth of the black-lip pearl oyster, Pinctada margaritifera, at nine culture sites of French Polynesia: synthesis of several sampling designs conducted between 1994 and 1999, Aquat. Living Resour., 14, 155, 10.1016/S0990-7440(01)01120-2 Pouvreau, 2000, In situ suspension feeding behaviour of the pearl oyster, Pinctada margaritifera: combined effects of body size and weather-related seston composition, Aquaculture, 181, 91, 10.1016/S0044-8486(99)00215-X Pouvreau, 2000, Growth of the black-lip pearl oyster, Pinctada margaritifera, in suspended culture under hydrobiological conditions of Takapoto lagoon (French Polynesia), Aquaculture, 184, 133, 10.1016/S0044-8486(99)00319-1 Pouvreau, 2006, Application of a dynamic energy budget model to the Pacific oyster, Crassostrea gigas, reared under various environmental conditions, J. Sea Res., 56, 156, 10.1016/j.seares.2006.03.007 Powell, 2002, Influence of food quality and quantity on the growth and development of crassostrea gigas larvae: a modeling approach, Aquaculture, 210, 89, 10.1016/S0044-8486(01)00891-2 Rico-Villa, 2009, Influence of food density and temperature on ingestion, growth and settlement of Pacific oyster larvae, crassostrea gigas, Aquaculture, 287, 395, 10.1016/j.aquaculture.2008.10.054 Rico-Villa, 2010, A dynamic energy budget (DEB) growth model for Pacific oyster larvae, crassostrea gigas, Aquaculture, 305, 84, 10.1016/j.aquaculture.2010.04.018 Ripley, 2013 Southgate, 2011 Strugnell, 2003, Changes in tissue composition during larval development of the blacklip pearl oyster, Pinctada margaritifera (L.), Molluscan Res., 23, 179, 10.1071/MR02018 Thomas, 2010, Spatial and temporal variability of the pico-and nanophytoplankton and bacterioplankton in a deep Polynesian atoll lagoon, Aquat. Microb. Ecol., 59, 89, 10.3354/ame01384 Thomas, 2011, Application of a bioenergetic growth model to larvae of the pearl oyster Pinctada margaritifera L, J. Sea Res., 66, 331, 10.1016/j.seares.2011.04.005 Thomas, 2012, Multi-scale distribution and dynamics of bivalve larvae in a deep atoll lagoon (Ahe, French Polynesia), Mar. Pollut. Bull., 65, 453, 10.1016/j.marpolbul.2011.12.028 Thomas, 2016, Larval connectivity of pearl oyster through biophysical modelling; evidence of food limitation and broodstock effect, Estuar. Coast. Shelf Sci., 182, 283, 10.1016/j.ecss.2016.03.010 Thorson, 1950, Reproductive and larval ecology of marine bottom invertebrates, Biol. Rev., 25, 1, 10.1111/j.1469-185X.1950.tb00585.x Underwood, 1989, Supply-side ecology and benthic marine assemblages, Trends Ecol. Evol., 4, 16, 10.1016/0169-5347(89)90008-6 Wickham, 2010, ggplot2: elegant graphics for data analysis, J. Stat. Softw., 35, 65 Widdows, 1991, Physiological ecology of mussel larvae, Aquaculture, 94, 147, 10.1016/0044-8486(91)90115-N Yukihira, 2000, Comparative effects of temperature on suspension feeding and energy budgets of the pearl oysters Pinctada margaritifera and P. maxima, Mar. Ecol. Prog. Ser., 195, 179, 10.3354/meps195179