Estimating chlorophyll a concentrations from remote-sensing reflectance in optically shallow waters

Antoine, 1996, Oceanic primary production 2. Estimation at global scale from satellite (coastal zone color scanner) chlorophyll, Global Biogeochemical Cycles, 10, 57, 10.1029/95GB02832 Balch, 1991, Biological and optical properties of mesoscale coccolithophore blooms in the Gulf of Maine, Limnology and Oceanography, 36, 629, 10.4319/lo.1991.36.4.0629 Bissett, 1997, Pigment packaging and Chl-a specific absorption in high-light oceanic waters, Limnology and Oceanography, 42, 961, 10.4319/lo.1997.42.5.0961 Bricaud, 1995, Variability in the chlorophyll-specific absorption coefficients of natural phytoplankton: Analysis and parameterization, Journal of Geophysical Research, 100, 13321, 10.1029/95JC00463 Bricaud, 1990, Spectral absorption coefficients of living phytoplankton and nonalgal biogenous matter: A comparison between the Peru upwelling area and the Sargasso Sea, Limnology and Oceanography, 35, 562, 10.4319/lo.1990.35.3.0562 Cannizzaro, J. P., Carder, K. L., Chen, F. R. Heil, C. A., Vargo, G. A. (in press). A novel technique for detection of the toxic dinoflagellate, Karenia brevis, in the Gulf of Mexico from remotely sensed ocean color data. Continental Shelf Research. Carder, 2005, Ocean color algorithms in optically shallow waters: Limitations and improvements, vol. 5885 Carder, 1999, Semi-analytic moderate-resolution imaging spectrometer algorithms for chlorophyll a and absorption with bio-optical domains based on nitrate-depletion temperatures, Journal of Geophysical Research, 104, 5403, 10.1029/1998JC900082 Carder, 1991, Reflectance model for quantifying chlorophyll a in the presence of productivity degradation products, Journal of Geophysical Research, 96, 20599, 10.1029/91JC02117 Carder, 1993, Unmixing of spectral components affecting AVIRIS imagery of Tampa Bay, 77 Carder, 1989, Marine humic and fulvic acids: Their effects on remote sensing of ocean chlorophyll, Limnology and Oceanography, 34, 68, 10.4319/lo.1989.34.1.0068 Decho, 2003, Sediment properties influencing upwelling spectral reflectance signatures: The “biofilm gel effect”, Limnology and Oceanography, 48, 431, 10.4319/lo.2003.48.1_part_2.0431 D'Sa, 2002, Estimation of colored dissolved organic matter and salinity fields in case 2 waters using SeaWiFS: Examples from Florida Bay and Florida Shelf, Proceedings of the Indian Academy of Sciences. Earth and Planetary Sciences, 111, 197 Eplee, 2000, SeaWiFS global clear-water analysis Gordon, 1988, A semianalytic radiance model of ocean color, Journal of Geophysical Research, 93, 10909, 10.1029/JD093iD09p10909 Gordon, 1983, Phytoplankton pigment concentrations in the Middle Atlantic Bight: Comparison of ship determinations and CZCS estimates, Applied Optics, 22, 20, 10.1364/AO.22.000020 Gordon, 1994, Retrieval of water-leaving radiance and aerosol optical thickness over the oceans with SeaWiFS: A preliminary algorithm, Applied Optics, 33, 443, 10.1364/AO.33.000443 Gould, 1997, Remote sensing estimates of inherent optical properties in a coastal environment, Remote Sensing of Environment, 61, 290, 10.1016/S0034-4257(97)89496-5 Gregg, 2002, Decadal changes in global ocean chlorophyll, Geophysical Research Letters, 29, 1730, 10.1029/2002GL014689 Holm-Hansen, 1978, Chlorophyll a determination: Improvements in methodology, Oikos, 30, 438, 10.2307/3543338 Hu, 1998, A method to derive optical properties over shallow waters using SeaWiFS, 1 Kiefer, 1982, Spectral absorption by marine particles of coastal waters of Baja California, Limnology and Oceanography, 27, 492, 10.4319/lo.1982.27.3.0492 Kishino, 1985, Estimation of the spectral absorption coefficients of phytoplankton in the sea, Bulletin of Marine Science, 37, 634 Lee, Z. (1994). Visible-infrared remote-sensing model and applications for oceanic waters, PhD dissertation, University of South Florida, St. Petersburg, FL. Lee, 2002, Effect of spectral band numbers on the retrieval of water column and bottom properties from ocean color data, Applied Optics, 41, 2191, 10.1364/AO.41.002191 Lee, 2001, Properties of the water column and bottom derived from Airborne Visible Infrared Imaging Spectrometer (AVIRIS) data, Journal of Geophysical Research, 106, 11639, 10.1029/2000JC000554 Lee, 2004, Effects of molecular and particle scatterings on the model parameter for remote-sensing reflectance, Applied Optics, 43, 4957, 10.1364/AO.43.004957 Lee, 1998, Hyperspectral remote sensing for shallow waters: I. A semi-analytical model, Applied Optics, 37, 6329, 10.1364/AO.37.006329 Lee, 1999, Hyperspectral remote sensing for shallow waters: 2. Deriving bottom depths and water properties by optimization, Applied Optics, 38, 3831, 10.1364/AO.38.003831 Lee, 1997, Remote-sensing reflectance and inherent optical properties of oceanic waters derived from above-water measurements, vol. 2963, 1960 Lee, 1998, A neural network approach to deriving optical properties and depths of shallow waters, 1 Louchard, 2003, Optical remote sensing of benthic habitats and bathymetry in coastal environments at Lee Stocking Island, Bahamas: A comparative spectral classification approach, Limnology and Oceanography, 48, 511, 10.4319/lo.2003.48.1_part_2.0511 Lyzenga, 1978, Passive remote sensing techniques for mapping water depth and bottom features, Applied Optics, 17, 379, 10.1364/AO.17.000379 Maffione, 1997, Instruments and methods for measuring the backward-scattering coefficient of ocean waters, Applied Optics, 36, 6057, 10.1364/AO.36.006057 Maritorena, 1994, Diffuse reflectance of oceanic shallow waters: Influence of water depth and bottom albedo, Limnology and Oceanography, 39, 1689, 10.4319/lo.1994.39.7.1689 McClain, 2000, SeaWiFS postlaunch calibration and validation analyses: Part 2 Mobley, 2005, Interpretation of hyperspectral remote-sensing imagery via spectrum matching and look-up tables, Applied Optics, 44, 3576, 10.1364/AO.44.003576 Morel, 1974, Optical properties of pure water and pure sea water, 1 Morel, 1993, Diffuse reflectance of oceanic waters: Part 2. Bidirectional aspects, Applied Optics, 32, 6864, 10.1364/AO.32.006864 Mueller, J. L. & Fargion, G. S. (2002). Ocean optics protocols for satellite ocean color sensor validation, revision 3, volume 2. NASA Tech. Memo. 2002-210004/Rev3-Vol2, NASA Goddard Space Flight Center, Greenbelt, MD. Müller-Karger, 1990, A comparison of ship and coastal zone color scanner mapped distribution of phytoplankton in the southeastern Bering Sea, Journal of Geophysical Research, 95, 11483, 10.1029/JC095iC07p11483 Nelson, 1993, Detrital spectral absorption: Laboratory studies of visible light effects on phytodetritus absorption, bacterial spectral signal, and comparison to field measurements, Journal of Marine Research, 51, 181, 10.1357/0022240933223864 O'Reilly, 1998, Ocean color chlorophyll algorithms for SeaWiFS, Journal of Geophysical Research, 103, 24937, 10.1029/98JC02160 O'Reilly, 2000, Ocean color chlorophyll a algorithms for SeaWiFS, OC2, and OC4: Version 4 Pope, 1997, Absorption spectrum (380–700 nm) of pure waters: II. Integrating cavity measurements, Applied Optics, 36, 8710, 10.1364/AO.36.008710 Roesler, 1989, Modeling in situ phytoplankton absorption from total absorption spectra in productive inland marine waters, Limnology and Oceanography, 34, 1510, 10.4319/lo.1989.34.8.1510 Sandidge, 1998, Coastal bathymetry from hyperspectral observations of water radiance, Remote Sensing of Environment, 65, 341, 10.1016/S0034-4257(98)00043-1 Sathyendranath, 2001, Remote sensing of phytoplankton pigments: A comparison of empirical and theoretical approaches, International Journal of Remote Sensing, 22, 249, 10.1080/014311601449925 Spitzer, 1987, Bottom influence on the reflectance of the sea, International Journal of Remote Sensing, 8, 279, 10.1080/01431168708948642 Subramaniam, 2002, Detecting Trichodesmium blooms in SeaWiFS imagery, Deep-Sea Research. II, 49, 107, 10.1016/S0967-0645(01)00096-0 Trees, 2000, Accessory pigments versus chlorophyll a concentrations within the euphotic zone: A ubiquitous relationship, Limnology and Oceanography, 45, 1130, 10.4319/lo.2000.45.5.1130 Werdell, 2003, Remote assessment of benthic substrate composition in shallow waters using multispectral reflectance, Limnology and Oceanography, 48, 557, 10.4319/lo.2003.48.1_part_2.0557 Yentsch, 1962, Measurement of visible light absorption by particulate matter in the ocean, Limnology and Oceanography, 7, 207, 10.4319/lo.1962.7.2.0207