Establishment of a yeast platform strain for production of p-coumaric acid through metabolic engineering of aromatic amino acid biosynthesis

Bhan, 2013, Pathway and protein engineering approaches to produce novel and commodity small molecules, Curr. Opin. Biotechnol., 24, 1137, 10.1016/j.copbio.2013.02.019

Bode, 1991, Regulation of chorismate mutase activity of various yeast species by aromatic amino acids, Antonie van Leeuwenhoek, 59, 9, 10.1007/BF00582113

Borodina, 2014, Advances in metabolic engineering of yeast Saccharomyces cerevisiae for production of chemicals, Biotechnol. J., 9, 609, 10.1002/biot.201300445

Borodina, 2015, Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine, Metab. Eng., 27, 57, 10.1016/j.ymben.2014.10.003

DeFeyter, 1986, Purification and properties of shikimate kinase II from Escherichia coli K-12, J. Bactiol, 165, 331

Erdeniz, 1997, Cloning-free PCR-based allele replacement methods, Genome Res., 7, 1174, 10.1101/gr.7.12.1174

Ger, 1994, A single Ser-180 mutation desensitizes feedback inhibition of the phenylalanine-sensitive 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase in Escherichia coli, J. Biochem., 116, 986, 10.1093/oxfordjournals.jbchem.a124657

Gietz, 2002, Transformation of yeast by lithium acetate/single-stranded carrier DNA / polyethylene glycol method, Methods Enzymol., 350, 87, 10.1016/S0076-6879(02)50957-5

Hartmann, 2003, Evolution of feedback-inhibited beta /alpha barrel isoenzymes by gene duplication and a single mutation, Proc. Natl. Acad. Sci. U.S.A, 100, 862, 10.1073/pnas.0337566100

Hawkins, 2008, Production of benzylisoquinoline alkaloids in Saccharomyces cerevisiae, Nat. Chem. Biol., 4, 564, 10.1038/nchembio.105

Hong, 2012, Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries, Cell. Mol. Life Sci., 69, 2671, 10.1007/s00018-012-0945-1

Hu, 2003, Mutation analysis of the feedback inhibition site of phenylalanine-sensitive 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase of Escherichia coli, J. Basic Microbiol., 43, 399, 10.1002/jobm.200310244

Jensen, 2014, EasyClone: method for iterative chromosomal integration of multiple genes in Saccharomyces cerevisiae, FEMS Yeast Res., 14, 238, 10.1111/1567-1364.12118

Jendresen, 2015, Highly active and specific tyrosine ammonia-lyases from diverse origins enable enhanced production of aromatic compounds in bacteria and Saccharomyces cerevisiae, Appl. Environ. Microbiol., 81, 4458, 10.1128/AEM.00405-15

Juminaga, 2012, Modular engineering of L-tyrosine production in Escherichia coli, Appl. Environ. Microbiol., 78, 89, 10.1128/AEM.06017-11

Koopman, 2012, De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae, Microb. Cell Fact., 11, 155, 10.1186/1475-2859-11-155

Krivoruchko, 2011, Opportunities for yeast metabolic engineering: lessons from synthetic biology, Biotechnol. J., 6, 262, 10.1002/biot.201000308

Krivoruchko, 2015, Microbial acetyl-CoA metabolism and metabolic engineering, Metab. Eng., 28, 28, 10.1016/j.ymben.2014.11.009

Leonard, 2007, Engineering central metabolic pathways for high-level flavonoid production in Escherichia coli, Appl. Environ. Microbiol., 73, 3877, 10.1128/AEM.00200-07

Leonard, 2009, Opportunities in metabolic engineering to facilitate scalable alkaloid production, Nat. Chem. Biol., 5, 292, 10.1038/nchembio.160

Li, 2015, Application of synthetic biology for production of chemicals in yeast Saccharomyces cerevisiae, FEMS Yeast Res., 15, 1

Lim, 2011, High-yield resveratrol production in engineered Escherichia coli, Appl. Environ. Microbiol., 77, 3451, 10.1128/AEM.02186-10

Luttik, 2008, Alleviation of feedback inhibition in Saccharomyces cerevisiae aromatic amino acid biosynthesis: quantification of metabolic impact, Metab. Eng., 10, 141, 10.1016/j.ymben.2008.02.002

Maeda, 2012, The shikimate pathway and aromatic amino acid biosynthesis in plants, Annu. Rev. Plant Biol., 63, 73, 10.1146/annurev-arplant-042811-105439

Malla, 2012, Production of 7-O-methyl aromadendrin, a medicinally valuable flavonoid, in Escherichia coli, Appl. Environ. Microbiol., 78, 684, 10.1128/AEM.06274-11

Nielsen, 2013, Metabolic engineering of yeast for production of fuels and chemicals, Curr. Opin. Biotechnol., 24, 398, 10.1016/j.copbio.2013.03.023

Pandey, 2013, Genetics of Flavonoids, 1617

Perez-Gregorio, 2014, Increasing the added-value of onions as a source of antioxidant flavonoids: a critical review, Crit. Rev. Food Sci. Nutr., 54, 1050, 10.1080/10408398.2011.624283

Reid, 2002, Cloning-free genome alterations in Saccharomyces cerevisiae using adaptamer-mediated PCR, Methods Enzymol., 350, 258, 10.1016/S0076-6879(02)50968-X

Santos, 2011, Optimization of a heterologous pathway for the production of flavonoids from glucose, Metab. Eng., 13, 392, 10.1016/j.ymben.2011.02.002

Scotti, 2012, SAR, QSAR and docking of anticancer flavonoids and variants: a review, Curr. Top. Med. Chem., 12, 2785, 10.2174/1568026611212240007

Siddiqui, 2012, Advancing secondary metabolite biosynthesis in yeast with synthetic biology tools, FEMS Yeast Res., 12, 144, 10.1111/j.1567-1364.2011.00774.x

Shi, 2014, Improving Production of Malonyl Coenzyme A-Derived Metabolites, 5, 1

Takai A, Nishi R, Joe Y, Ito H., 2005. L-Tyrosine producing bacterium and a method for producing L-tyrosine. US Patent application no. 2005/0277179 A1

Tribe DE., 1987. Novel microorganism and method. US Patent 4,681,852; Jul 21 1987.

Trantas, 2009, Metabolic engineering of the complete pathway leading to heterologous biosynthesis of various flavonoids and stilbenoids in Saccharomyces cerevisiae, Metab. Eng., 11, 355, 10.1016/j.ymben.2009.07.004

Winkel-Shirley, 2001, Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology, Plant Physiol., 126, 485, 10.1104/pp.126.2.485

Wu, 2014, Modular optimization of heterologous pathways for de novo synthesis of (2S)-naringenin in Escherichia coli, PLoS One, 9, e101492, 10.1371/journal.pone.0101492

Yang, 2014, Production of kaempferol 3-O-rhamnoside from glucose using engineered Escherichia coli, J. Ind. Microbiol. Biotechnol., 41, 1311, 10.1007/s10295-014-1465-9

Zheng, 2004, An efficient one-step site-directed and site-saturation mutagenesis protocol, Nucleic Acids Res., 32, e115, 10.1093/nar/gnh110