Epinephrine affects gene expression levels and has a complex effect on biofilm formation in Micrococcus luteus strain C01 isolated from human skin

Biofilm - Tập 3 - Trang 100058 - 2021
A.V. Gannesen1, M.I. Schelkunov2,3, O.V. Geras'kina4, N.E. Makarova2, M.V. Sukhacheva1, N.D. Danilova1, M.A. Ovcharova1, S.V. Mart'yanov1, T.A. Pankratov1, D.S. Muzychenko1, M.V. Zhurina1, A.V. Feofanov4,5, E.A. Botchkova1, V.K. Plakunov1
1Federal Research Center “Fundamentals of Biotechnology” of the Russian Academy of Sciences, Moscow, Russia
2Skolkovo Institute of Science and Technology, Moscow, Russia
3Institute for Information Transmission Problems, Moscow, Russia
4Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia
5Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia

Tài liệu tham khảo

Grice, 2009, NISC Comparative sequencing program: topographical and temporal diversity of the human skin microbiome, Science, 324, 1190, 10.1126/science.1171700 Lange-Asschenfeldt, 2011, Distribution of bacteria in the epidermal layers and hair follicles of the human skin, Skin Pharmacol Physiol, 24, 305, 10.1159/000328728 Daeschlein, 2012, Skin decontamination by low-temperature atmospheric pressure plasma jet and dielectric barrier discharge plasma, J Hosp Infect, 81, 177, 10.1016/j.jhin.2012.02.012 Nozhevnikova, 2015, Multi-species biofilms in ecology, medicine, and biotechnology, Microbiology, 84, 731, 10.1134/S0026261715060107 Jahns, 2012, An increased incidence of Propionibacterium acnes biofilms in acne vulgaris: a case-control study, Br J Dermatol, 167, 50, 10.1111/j.1365-2133.2012.10897.x Jahns, 2014, Three dimensional distribution of Propionibacterium acnes biofilms in human skin, Exp Dermatol, 23, 687, 10.1111/exd.12482 Gannesen, 2018, Regulation of monospecies and mixed biofilms formation of skin Staphylococcus aureus and Cutibacterium acnes by human natriuretic peptides, Front Microbiol, 9, 2912, 10.3389/fmicb.2018.02912 Mauclaire, 2010, Effect of simulated microgravity on growth and production of exopolymeric substances of Micrococcus luteus space and earth isolates, Immunol. Med. Microbiol., 59, 350, 10.1111/j.1574-695X.2010.00683.x Albertson, 1978, Septic shock with, Micrococcus luteus. AMA Arch. Intern. Med., 138, 487, 10.1001/archinte.1978.03630270093032 Peces, 1997, Relapsing bacteraemia due to Micrococcus luteus in a haemodialysis patient with a Perm-Cath catheter, Nephrol Dial Transplant, 12, 2428, 10.1093/ndt/12.11.2428 Miltiadous, 2013, Native valve endocarditis due to Micrococcus luteus: a case report and review of the literature, J Med Case Rep, 5, 251, 10.1186/1752-1947-5-251 Kania, 2010, Biofilms on tracheoesophageal voice prostheses: a confocal laser scanning microscopy demonstration of mixed bacterial and yeast biofilms, Biofouling, 26, 519, 10.1080/08927014.2010.489238 Min, 2009, Coaggregation by the freshwater bacterium Sphingomonas natatoria alters dual-species biofilm formation, Appl Environ Microbiol, 75, 3987, 10.1128/AEM.02843-08 Vornhagen, 2013, Coaggregation occurs amongst bacteria within and between domestic showerhead biofilms, Biofouling, 29, 53, 10.1080/08927014.2012.744395 Lesouhaitier, 2009, Gram-Negative bacterial sensors for eukaryotic signal molecules, Sensors, 9, 6967, 10.3390/s90906967 N'Diaye, 2016, Skin-bacteria communication: involvement of the neurohormone calcitonin gene related peptide (CGRP) in the regulation of Staphylococcus epidermidis virulence, Sci Rep, 6, 35379, 10.1038/srep35379 Lesouhaitier, 2019, Host peptidic hormones affecting bacterial biofilm formation and virulence, J. Innate Immun., 11, 227, 10.1159/000493926 Borrel, 2019, Acne and stress: impact of catecholamines on Cutibacterium acnes, Front Med, 6, 155, 10.3389/fmed.2019.00155 Hansen, 2006, Antimicrobial activity of Substance P and neuropeptide Y against laboratory strains of bacteria and oral microorganisms, J Neuroimmunol, 177, 215, 10.1016/j.jneuroim.2006.05.011 Gannesen, 2015, Regulation of biofilm formation by Pseudomonas chlororaphis in an in vitro system, Microbiology, 84, 319, 10.1134/S0026261715030042 Plakunov, 2017, Controlling of microbial biofilms formation: anti-and probiofilm agents, Microbiology, 86, 423, 10.1134/S0026261717040129 Lyte, 1992, Catecholamine induced growth of gram negative bacteria, Life Sci, 50, 203, 10.1016/0024-3205(92)90273-R Lyte, 2004, Microbial endocrinology and infectious disease in the 21st century, Trends Microbiol, 12, 14, 10.1016/j.tim.2003.11.004 Bansal, 2007, Differential effects of epinephrine, norepinephrine, and indole on Escherichia coli O157: H7 chemotaxis, colonization, and gene expression, Infect Immun, 75, 4597, 10.1128/IAI.00630-07 Pasupuleti, 2014, Chemotaxis of Escherichia coli to norepinephrine (NE) requires conversion of NE to 3, 4-dihydroxymandelic acid, J Bacteriol, 196, 3992, 10.1128/JB.02065-14 Sule, 2017, The norepinephrine metabolite 3, 4-dihydroxymandelic acid is produced by the commensal microbiota and promotes chemotaxis and virulence gene expression in enterohemorrhagic Escherichia coli, Infect Immun, 85, 10.1128/IAI.00431-17 Lopes, 2018, Chemotaxis of Escherichia coli to major hormones and polyamines present in human gut, ISME J, 12, 2736, 10.1038/s41396-018-0227-5 Boyanova, 2017, Stress hormone epinephrine (adrenaline) and norepinephrine (noradrenaline) effects on the anaerobic bacteria, Anaerobe, 44, 13, 10.1016/j.anaerobe.2017.01.003 Danilova, 2020, Stimulatory effect of epinephrine on biofilms of Micrococcus luteus C01, Microbiology, 89, 493, 10.1134/S0026261720040049 Zhurina, 2017, Niclosamide as a promising antibiofilm agent, Microbiology, 86, 455, 10.1134/S0026261717040154 Donnelly, 1996, Epinephrine stability in plastic syringes and glass vials, Can J Hosp Pharm, 49 Mart’yanov, 2014, Activation of formation of bacterial biofilms by azithromycin and prevention of this effect, Microbiology, 83, 723, 10.1134/S0026261714060113 Plakunov, 2016, A universal method for quantitative characterization of growth and metabolic activity of microbial biofilms in static models, Microbiology, 85, 509, 10.1134/S0026261716040147 Eladawy, 2020, Effects of lysozyme, proteinase K, and cephalosporins on biofilm formation by clinical isolates of Pseudomonas aeruginosa, Interdiscip. Perspect. Infect. Dis., 2020, 10.1155/2020/6156720 Kim, 2019, Enzymatic inactivation of pathogenic and nonpathogenic bacteria in biofilms in combination with chlorine, J Food Protect, 82, 605, 10.4315/0362-028X.JFP-18-244 Klimko, 2020, In vitro evaluation of probiotic potential of selected lactic acid bacteria strains, Probiotics Antimicrob, 12, 1139, 10.1007/s12602-019-09599-6 Gannesen, 2018, Regulation of formation of monospecies and binary biofilms by human skin microbiota components, Staphylococcus epidermidis and Staphylococcus aureus, by human natriuretic peptides, Microbiology, 87, 597, 10.1134/S0026261718050090 Coenye, 2007, Biofilm formation by Propionibacterium acnes is associated with increased resistance to antimicrobial agents and increased production of putative virulence factors, Res Microbiol, 158, 386, 10.1016/j.resmic.2007.02.001 Traditional Methods of Cell Lysis. Protein Biology Resource Library https://www.thermofisher.com/ru/ru/home/life-science/protein-biology/protein-biology-learning-center/protein-biology-resource-library/pierce-protein-methods/traditional-methods-cell-lysis.htmL?ef_id=Cj0KCQjw1a6EBhC0ARIsAOiTkrE99MZg5ML8isEZJM3peNBnm4TIgtua8rsfJL9TuP9G9AWDrkrehWAaAsZLEALw_wcB:G:s&s_kwcid=AL!3652!3!458037844736!b!!g!!&cid=bid_pca_ppf_r01_co_cp1359_pjt0000_bid00000_0se_gaw_dy_pur_con&gclid=Cj0KCQjw1a6EBhC0ARIsAOiTkrE99MZg5ML8isEZJM3peNBnm4TIgtua8rsfJL9TuP9G9AWDrkrehWAaAsZLEALw_wcB. bcl2fastq and bcl2fastq2 Conversion Software. Support Resources https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.htmL. Bolger, 2014, Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, 30, 2114, 10.1093/bioinformatics/btu170 Camacho, 2009, BLAST+: architecture and applications, BMC Bioinf, 10, 421, 10.1186/1471-2105-10-421 Li, 2009, Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, 25, 1754, 10.1093/bioinformatics/btp324 Patro, 2017, Salmon provides fast and bias-aware quantification of transcript expression, Nat Methods, 14, 417, 10.1038/nmeth.4197 Bikandi, 2004, In silico analysis of complete bacterial genomes: PCR, AFLP-PCR, and endonuclease restriction, Bioinformatics, 20, 798, 10.1093/bioinformatics/btg491 Basic Local Alignment Search Tool. National Center for Biotechnology Information. https://blast.ncbi.nlm.nih.gov/Blast.cgi. The Protein database. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/protein. 2021, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Res, 49, D1 Benjamini, 1995, Controlling the false discovery rate: a practical and powerful approach to multiple testing, J. R. Stat. Soc. Series B, 57, 289 Dąbrowska, 2016, Materials used to simulate physical properties of human skin, Skin Res Technol, 22, 3, 10.1111/srt.12235 Brown Schmidt, 2005, The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: enzymatically active and inactive EAL domains, J Bacteriol, 187, 4774, 10.1128/JB.187.14.4774-4781.2005 Chou, 2016, Diversity of cyclic di-GMP-binding proteins and mechanisms, J Bacteriol, 198, 32, 10.1128/JB.00333-15 Vrljic, 1996, A new type of transporter with a new type of cellular function: l‐lysine export from Corynebacterium glutamicum, Mol Microbiol, 22, 815, 10.1046/j.1365-2958.1996.01527.x Levine, 2017, Low biofilm lysine content in refractory chronic periodontitis, J Periodontol, 88, 181, 10.1902/jop.2016.160302 Goh, 2013, Effects of different amino acids on biofilm growth, swimming motility and twitching motility in Escherichia coli BL21, J Biol Life Sci, 4, 103, 10.5296/jbls.v4i2.3195 Idrees, 2020, Multimodal role of amino acids in microbial control and drug development, Antibiotics, 9, 330, 10.3390/antibiotics9060330 Deng, 2020, L-lysine potentiates aminoglycosides against Acinetobacter baumannii via regulation of proton motive force and antibiotics uptake, Emerg Microb Infect, 9, 639, 10.1080/22221751.2020.1740611 Freestone, 2007, Specificity of catecholamine-induced growth in Escherichia coli O157: H7, Salmonella enterica and Yersinia enterocolitica, FEMS Microbiol Lett, 269, 221, 10.1111/j.1574-6968.2006.00619.x Yosipovitch, 2007, Study of psychological stress, sebum production and acne vulgaris in adolescents, Acta Derm Venereol, 87, 135, 10.2340/00015555-0231 Cambronel, 2019, Epinephrine affects motility, and increases adhesion, biofilm and virulence of Pseudomonas aeruginosa H103, Sci Rep, 9, 20203, 10.1038/s41598-019-56666-7 Yang, 2014, The role of the QseC quorum-sensing sensor kinase in epinephrine-enhanced motility and biofilm formation by Escherichia coli, Cell Biochem Biophys, 70, 391, 10.1007/s12013-014-9924-5 Strauss, 2009 Santen, 2020, Systemic estradiol levels with low-dose vaginal estrogens, Menopause, 27, 361, 10.1097/GME.0000000000001463 Ayala-Castro, 2008, Fe-S cluster assembly pathways in bacteria, Microbiol Mol Biol Rev, 72, 110, 10.1128/MMBR.00034-07 Berridge, 2005, Tetrazolium dyes as tools in cell biology: new insights into their cellular reduction, Biotechnol Annu Rev, 11, 127, 10.1016/S1387-2656(05)11004-7 Abdeen, 2016, GroEL/ES inhibitors as potential antibiotics, Bioorg Med Chem Lett, 26, 3127, 10.1016/j.bmcl.2016.04.089 Kunkle, 2018, Hydroxybiphenylamide GroEL/ES inhibitors are potent antibacterials against planktonic and biofilm forms of Staphylococcus aureus, J Med Chem, 61, 10651, 10.1021/acs.jmedchem.8b01293 Gannesen, 2019, Composition of biofilm matrix of Cutibacterium acnes acneic strain RT5, Front Microbiol, 10, 1284, 10.3389/fmicb.2019.01284 Alka, 2013, A short chain NAD (H)-dependent alcohol dehydrogenase (HpSCADH) from Helicobacter pylori: a role in growth under neutral and acidic conditions, Int J Biochem Cell Biol, 45, 1347, 10.1016/j.biocel.2013.04.006