Epigenetics in susceptibility, progression, and diagnosis of periodontitis
Tài liệu tham khảo
C David Allis, 2016, The molecular hallmarks of epigenetic control, Nat Rev Genet, 17, 487, 10.1038/nrg.2016.59
Feil, 2012, Epigenetics and the environment: emerging patterns and implications, Nat Rev Genet, 13, 97, 10.1038/nrg3142
Hodjat, 2020, Epigenetic alterations in aging tooth and the reprogramming potential, Ageing Res Rev, 63, 10.1016/j.arr.2020.101140
Alabert, 2020, Domain model explains propagation dynamics and stability of histone H3K27 and H3K36 methylation landscapes, Cell Rep, 30, 1223, 10.1016/j.celrep.2019.12.060
Yuan, 2018, Epigenetic modulation of Fgf21 in the perinatal mouse liver ameliorates diet-induced obesity in adulthood, Nat Commun, 9, 636, 10.1038/s41467-018-03038-w
Ehara, 2015, Ligand-activated PPARalpha-dependent DNA demethylation regulates the fatty acid beta-oxidation genes in the postnatal liver, Diabetes, 64, 775, 10.2337/db14-0158
Kersten, 2014, Integrated physiology and systems biology of PPARalpha, Mol Metab, 3, 354, 10.1016/j.molmet.2014.02.002
Pawlak, 2015, Molecular mechanism of PPARalpha action and its impact on lipid metabolism, inflammation and fibrosis in non-alcoholic fatty liver disease, J Hepatol, 62, 720, 10.1016/j.jhep.2014.10.039
Usui, 2021, Mechanism of alveolar bone destruction in periodontitis - periodontal bacteria and inflammation, Jpn Dent Sci Rev, 57, 201, 10.1016/j.jdsr.2021.09.005
Tonetti, 2018, Staging and grading of periodontitis: framework and proposal of a new classification and case definition, J Clin Periodo, 45, S149, 10.1111/jcpe.12945
Tonetti, 2018, Staging and grading of periodontitis: framework and proposal of a new classification and case definition, J Periodo, 89, S159, 10.1002/JPER.18-0006
Kapferer-Seebacher, 2021, Rare genetic disorders affecting the periodontal supporting tissues in adolescence, Front Dent Med, 10.3389/fdmed.2021.687510
Kornman, 1997, The interleukin-1 genotype as a severity factor in adult periodontal disease, J Clin Periodo, 24, 72, 10.1111/j.1600-051X.1997.tb01187.x
Ma, 2015, Interleukin-1beta (3953/4) CT polymorphism increases the risk of chronic periodontitis in Asians: evidence from a meta-analysis of 20 case-control studies, Arch Med Sci, 11, 267, 10.5114/aoms.2015.50961
Shimizu, 2015, A genome-wide association study of periodontitis in a Japanese population, J Dent Res, 94, 555, 10.1177/0022034515570315
Divaris, 2013, Exploring the genetic basis of chronic periodontitis: a genome-wide association study, Hum Mol Genet, 22, 2312, 10.1093/hmg/ddt065
Shaffer, 2014, Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years, G3, 4, 307, 10.1534/g3.113.008755
Teumer, 2013, Genome-wide association study of chronic periodontitis in a general German population, J Clin Periodo, 40, 977, 10.1111/jcpe.12154
Vaithilingam, 2014, Moving into a new era of periodontal genetic studies: relevance of large case-control samples using severe phenotypes for genome-wide association studies, J Periodont Res, 49, 683, 10.1111/jre.12167
Munz, 2017, A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis, Hum Mol Genet, 26, 2577, 10.1093/hmg/ddx151
Schaefer, 2010, A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis, Hum Mol Genet, 19, 553, 10.1093/hmg/ddp508
Masumoto, 2019, Identification of genetic risk factors of aggressive periodontitis using genomewide association studies in association with those of chronic periodontitis, J Periodont Res, 54, 199, 10.1111/jre.12620
Kitagaki, 2016, A putative association of a single nucleotide polymorphism in GPR126 with aggressive periodontitis in a Japanese population, PLoS One, 11, 10.1371/journal.pone.0160765
Sudo, 2017, Association of NOD2 mutations with aggressive periodontitis, J Dent Res, 96, 1100, 10.1177/0022034517715432
Mizuno, 2020, Aggressive periodontitis and NOD2 variants, J Hum Genet, 65, 841, 10.1038/s10038-020-0777-z
Hugot, 2001, Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease, Nature, 411, 599, 10.1038/35079107
Ogura, 2001, A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease, Nature, 411, 603, 10.1038/35079114
Richter, 2022, Exome sequencing of 5 families with severe early-onset periodontitis, J Dent Res, 101, 151, 10.1177/00220345211029266
Zhang, 2010, Interferon-gamma promoter hypomethylation and increased expression in chronic periodontitis, J Clin Periodo, 37, 953, 10.1111/j.1600-051X.2010.01616.x
de Faria Amormino, 2013, Hypermethylation and low transcription of TLR2 gene in chronic periodontitis, Hum Immunol, 74, 1231, 10.1016/j.humimm.2013.04.037
Stefani, 2013, Expression, polymorphism and methylation pattern of interleukin-6 in periodontal tissues, Immunobiology, 218, 1012, 10.1016/j.imbio.2012.12.001
Zhang, 2013, Epigenetic regulation of TNFA expression in periodontal disease, J Periodo, 84, 1606, 10.1902/jop.2013.120294
Asa’ad, 2017, Evaluation of DNA methylation of inflammatory genes following treatment of chronic periodontitis: a pilot case-control study, J Clin Periodo, 44, 905, 10.1111/jcpe.12783
Shaddox, 2017, Epigenetic regulation of inflammation in localized aggressive periodontitis, Clin Epigenet, 9, 94, 10.1186/s13148-017-0385-8
De Souza, 2014, High-throughput DNA analysis shows the importance of methylation in the control of immune inflammatory gene transcription in chronic periodontitis, Clin Epigenet, 6, 15, 10.1186/1868-7083-6-15
Demmer, 2008, Transcriptomes in healthy and diseased gingival tissues, J Periodo, 79, 2112, 10.1902/jop.2008.080139
Azevedo, 2020, DNA methylation profile of genes related to immune response in generalized periodontitis, J Periodontal Res, 55, 426, 10.1111/jre.12726
Kim, 2021, Differential DNA methylation and mRNA transcription in gingival tissues in periodontal health and disease, J Clin Periodo, 48, 1152, 10.1111/jcpe.13504
Hernández, 2021, ZNF718, HOXA4, and ZFP57 are differentially methylated in periodontitis in comparison with periodontal health: epigenome-wide DNA methylation pilot study, J Periodontal Res, 56, 710, 10.1111/jre.12868
Richter, 2021, Epigenetic adaptations of the masticatory mucosa to periodontal inflammation, Clin Epigenet, 13, 203, 10.1186/s13148-021-01190-7
Larsson, 2016, Expression of TET2 enzyme indicates enhanced epigenetic modification of cells in periodontitis, Eur J Oral Sci, 124, 329, 10.1111/eos.12281
Almiñana-Pastor, 2019, Alpiste-Illueca FM. Epigenetics and periodontics: a systematic review, Med Oral Patol Oral Cir Bucal, 24, e659
Khouly, 2020, The role of DNA methylation and histone modification in periodontal disease: a systematic review, Int J Mol Sci, 21, 6217, 10.3390/ijms21176217
Huynh, 2017, Histone deacetylases and their roles in mineralized tissue regeneration, Bone Rep, 7, 33, 10.1016/j.bonr.2017.08.001
Yao, 2019, The roles of microRNAs in epigenetic regulation, Curr Opin Chem Biol, 51, 11, 10.1016/j.cbpa.2019.01.024
Francis, 2020, Histone methylation: Achilles heel and powerful mediator of periodontal homeostasis, J Dent Res, 99, 1332, 10.1177/0022034520932491
Jurdziński, 2020, Epigenetic regulation of inflammation in periodontitis: cellular mechanisms and therapeutic potential, Clin Epigenet, 12, 186, 10.1186/s13148-020-00982-7
Lagosz, 2020, HDAC3 regulates gingival fibroblast inflammatory responses in periodontitis, J Dent Res, 99, 98, 10.1177/0022034519885088
Cabili, 2011, Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses, Genes Dev, 25, 1915, 10.1101/gad.17446611
Engreitz, 2016, Long non-coding RNAs: spatial amplifiers that control nuclear structure and gene expression, Nat Rev Mol Cell Biol, 17, 756, 10.1038/nrm.2016.126
Asa’ad, 2020, Expression of microRNAs in periodontal and peri-Implant diseases: a systematic review and meta-analysis, Int J Mol Sci, 21, 4147, 10.3390/ijms21114147
Micó-Martínez, 2021, MicroRNAs and periodontal disease: a qualitative systematic review of human studies, J Periodontal Implant Sci, 51, 386, 10.5051/jpis.2007540377
Motedayyen, 2015, Evaluation of MicroRNA-146a and its targets in gingival tissues of patients with chronic periodontitis, J Periodo, 86, 1380, 10.1902/jop.2015.150319
Suzuki, 2018, Genome-wide identification of chromatin-enriched RNA reveals that unspliced dentin matrix protein-1 mRNA regulates cell proliferation in squamous cell carcinoma, Biochem Biophys Res Commun, 495, 2303, 10.1016/j.bbrc.2017.12.136
Suzuki, 2021, DMP-1 promoter-associated antisense strand non-coding RNA, panRNA-DMP-1, physically associates with EGFR to repress EGF-induced squamous cell carcinoma migration, Mol Cell Biochem, 476, 1673, 10.1007/s11010-020-04046-5
Salmena, 2011, A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?, Cell, 146, 353, 10.1016/j.cell.2011.07.014
Jin, 2020, Identification of novel key lncRNAs involved in periodontitis by weighted gene co-expression network analysis, J Periodontal Res, 55, 96, 10.1111/jre.12693
Li, 2018, Integrated analysis of long noncoding RNA-associated competing endogenous RNA network in periodontitis, J Periodontal Res, 53, 495, 10.1111/jre.12539
Daudt, 2018, Association between metabolic syndrome and periodontitis: a systematic review and meta-analysis, Braz Oral Res, 32, 10.1590/1807-3107bor-2018.vol32.0035
Hajishengallis, 2015, Periodontitis: from microbial immune subversion to systemic inflammation, Nat Rev Immunol, 15, 30, 10.1038/nri3785
Lamster, 2017, Periodontal disease and the metabolic syndrome, Int Dent J, 67, 67, 10.1111/idj.12264
de Miguel-Infante, 2018, Periodontal disease in adults with diabetes, prevalence and risk factors, Results Obs Study Int J Clin Pract
Li, 2021, Epigenetic changes caused by diabetes and their potential role in the development of periodontitis, J Diabetes Investig, 12, 1326, 10.1111/jdi.13477
Kojima, 2016, Tumor necrosis factor-alpha gene promoter methylation in Japanese adults with chronic periodontitis and rheumatoid arthritis, J Periodontal Res, 51, 350, 10.1111/jre.12314
Tiensripojamarn, 2021, Periodontitis is associated with cardiovascular diseases: a 13-year study, J Clin Periodo, 48, 348, 10.1111/jcpe.13418
Hamza, 2021, Emerging role of epigenetics in explaining relationship of periodontitis and cardiovascular diseases, Diseases, 9, 48, 10.3390/diseases9030048
Loo, 2010, Epigenetic change in E-cadherin and COX-2 to predict chronic periodontitis, J Transl Med, 8, 110, 10.1186/1479-5876-8-110
Safi-Stibler, 2020, Epigenetics and the developmental origins of health and disease: Parental environment signalling to the epigenome, critical time windows and sculpting the adult phenotype, Semin Cell Dev Biol, 97, 172, 10.1016/j.semcdb.2019.09.008
Breivik, 2015, Maternal deprivation of Lewis rat pups increases the severity of experimental periodontitis in adulthood, Open Dent J, 9, 65, 10.2174/1874210601509010065
Palioto, 2019, Epigenetic and inflammatory events in experimental periodontitis following systemic microbial challenge, J Clin Periodo, 46, 819, 10.1111/jcpe.13151
Cho, 2017, Transcriptomics and methylomics in chronic periodontitis with tobacco use: a pilot study, Clin Epigenet, 9, 81, 10.1186/s13148-017-0381-z
Richter, 2019, A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers, Clin Epigenet, 11, 105, 10.1186/s13148-019-0697-y
Li, 2017, Potential role of CYP1B1 in the development and treatment of metabolic diseases, Pharm Ther, 178, 18, 10.1016/j.pharmthera.2017.03.007
Menezes, 2008, The potential role of suppressors of cytokine signaling in the attenuation of inflammatory reaction and alveolar bone loss associated with apical periodontitis, J Endod, 34, 1480, 10.1016/j.joen.2008.09.003
de, 2019, Effect of smoking on the DNA methylation pattern of the SOCS1 promoter in epithelial cells from the saliva of patients with chronic periodontitis, J Periodo, 90, 1279, 10.1002/JPER.18-0692
Du, 2019, MicroRNA expression profiling of nicotine-treated human periodontal ligament cells, J Oral Sci, 61, 206, 10.2334/josnusd.17-0403
Martins, 2016, Epigenetic modifications of histones in periodontal disease, J Dent Res, 95, 215, 10.1177/0022034515611876
Barros, 2020, Maintaining barrier function of infected gingival epithelial cells by inhibition of DNA methylation, J Periodo, 91, S68
Mahmoud, 2022, An overview of epigenetics in obesity: the role of lifestyle and therapeutic interventions, Int J Mol Sci, 23, 1341, 10.3390/ijms23031341
Haniuda, 2020, Metabolic reprogramming induces germinal center B cell differentiation through Bcl6 locus remodeling, Cell Rep, 33, 10.1016/j.celrep.2020.108333
Martínez-Reyes, 2020, Mitochondrial TCA cycle metabolites control physiology and disease, Nat Commun, 11, 102, 10.1038/s41467-019-13668-3
Arts, 2016, Glutaminolysis and fumarate accumulation integrate immunometabolic and epigenetic programs in trained immunity, Cell Metab, 24, 807, 10.1016/j.cmet.2016.10.008
Yuan, 2021, PPARgamma-induced global H3K27 acetylation maintains osteo/cementogenic abilities of periodontal ligament fibroblasts, Int J Mol Sci, 22, 8646, 10.3390/ijms22168646
Yuan, 2022, Loss of IkappaBzeta drives dentin formation via altered H3K4me3 status, J Dent Res, 10.1177/00220345221075968
Lee, 2018, Acetyl-CoA promotes glioblastoma cell adhesion and migration through Ca(2+)-NFAT signaling, Genes Dev, 32, 497, 10.1101/gad.311027.117
Qiu, 2019, Acetate promotes T cell effector function during glucose restriction, Cell Rep, 27, 10.1016/j.celrep.2019.04.022
Bradshaw, 2021, Acetyl-CoA metabolism and histone acetylation in the regulation of aging and lifespan, Antioxidants, 10, 572, 10.3390/antiox10040572
Ahmadian, 2013, PPARgamma signaling and metabolism: the good, the bad and the future, Nat Med, 19, 557, 10.1038/nm.3159
Huynh, 2016, Inhibition of histone deacetylases enhances the osteogenic differentiation of human periodontal ligament cells, J Cell Biochem, 117, 1384, 10.1002/jcb.25429
Hirata-Tsuchiya, 2014, Inhibition of BMP2-induced bone formation by the p65 subunit of NF-kappaB via an interaction with Smad4, Mol Endocrinol, 28, 1460, 10.1210/me.2014-1094
Hirata-Tsuchiya, 2020, A small nuclear acidic protein (MTI-II, Zn(2+)-binding protein, parathymosin) attenuates TNF-alpha inhibition of BMP-induced osteogenesis by enhancing accessibility of the Smad4-NF-kappaB p65 complex to Smad binding element, Mol Cell Biochem, 469, 133, 10.1007/s11010-020-03734-6
Li, 2020, Epigenetic modifier trichostatin A enhanced osteogenic differentiation of mesenchymal stem cells by inhibiting NF-kappaB (p65) DNA binding and promoted periodontal repair in rats, J Cell Physiol, 235, 9691, 10.1002/jcp.29780
Sun, 2017, Osthole improves function of periodontitis periodontal ligament stem cells via epigenetic modification in cell sheets engineering, Sci Rep, 7, 5254, 10.1038/s41598-017-05762-7
Wang, 2020, XPO5 promotes primary miRNA processing independently of RanGTP, Nat Commun, 11, 1845, 10.1038/s41467-020-15598-x
Bohnsack, 2004, Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs, RNA, 10, 185, 10.1261/rna.5167604
Lund, 2004, Nuclear export of microRNA precursors, Science, 303, 95, 10.1126/science.1090599
Yi, 2003, Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs, Genes Dev, 17, 3011, 10.1101/gad.1158803
Assis, 2021, Non-coding RNAs repressive role in post-transcriptional processing of RUNX2 during the acquisition of the osteogenic phenotype of periodontal ligament mesenchymal stem cells, Dev Biol, 470, 37, 10.1016/j.ydbio.2020.10.012
Jiang, 2021, MiR-153-3p inhibits osteogenic differentiation of periodontal ligament stem cells through KDM6A-induced demethylation of H3K27me3, J Periodontal Res, 56, 379, 10.1111/jre.12830
Hou, 2019, KLF2 regulates osteoblast differentiation by targeting of Runx2, Lab Invest, 99, 271, 10.1038/s41374-018-0149-x
Li, 2020, Epigenetic silencing of KLF2 by long non-coding RNA SNHG1 inhibits periodontal ligament stem cell osteogenesis differentiation, Stem Cell Res Ther, 11, 435, 10.1186/s13287-020-01953-8
Uehara, 2014, Lipopolysaccharide extracted from Porphyromonas gingivalis induces DNA hypermethylation of runt-related transcription factor 2 in human periodontal fibroblasts, J Microbiol Immunol Infect, 47, 176, 10.1016/j.jmii.2012.08.005
Diomede, 2017, Porphyromonas gingivalis lipopolysaccharide stimulation in human periodontal ligament stem cells: role of epigenetic modifications to the inflammation, Eur J Histochem, 61, 2826
Marconi, 2021, Ascorbic aid: a new player of epigenetic regulation in LPS-gingivalis treated human periodontal ligament stem cells, Oxid Med Cell Longev, 10.1155/2021/6679708
Francis, 2019, Histone methylation mechanisms modulate the inflammatory response of periodontal ligament progenitors, Stem Cells Dev, 28, 1015, 10.1089/scd.2019.0125
Wang, 2018, Jumonji domain-containing protein 3 regulates the early inflammatory response epigenetically in human periodontal ligament cells, Arch Oral Biol, 93, 87, 10.1016/j.archoralbio.2018.05.007
Diomede, 2021, The effect of liposomal curcumin as an anti-Inflammatory strategy on Lipopolysaccharide e from Porphyromonas gingivalis treated endothelial committed neural crest derived stem cells: Morphological and molecular mechanisms, Int J Mol Sci, 22, 7534, 10.3390/ijms22147534
Lee, 2019, Histone Lys demethylase KDM3C demonstrates anti-inflammatory effects by suppressing NF-kappaB signaling and osteoclastogenesis, FASEB J, 33, 10515, 10.1096/fj.201900154RR
Kirkpatrick, 2018, Inhibition of the histone demethylase KDM4B leads to activation of KDM1A, attenuates bacterial-induced pro-inflammatory cytokine release, and reduces osteoclastogenesis, Epigenetics, 13, 557, 10.1080/15592294.2018.1481703
Cantley, 2017, Histone deacetylases (HDAC) in physiological and pathological bone remodelling, Bone, 95, 162, 10.1016/j.bone.2016.11.028
Algate, 2020, Histone deacetylases 1 and 2 inhibition suppresses cytokine production and osteoclast bone resorption in vitro, J Cell Biochem, 121, 244, 10.1002/jcb.29137
Cho, 2017, Direct gingival fibroblast/osteoblast transdifferentiation via epigenetics, J Dent Res, 96, 555, 10.1177/0022034516686745
Yoshida, 2021, Direct reprogramming of epithelial cell rests of malassez into mesenchymal-like cells by epigenetic agents, Sci Rep, 11, 1852, 10.1038/s41598-020-79426-4
He, 2021, m(6) A RNA methylation: from mechanisms to therapeutic potential, EMBO J, 40, 10.15252/embj.2020105977
Han, 2022, The emerging role of small extracellular vesicles in saliva and gingival crevicular fluid as diagnostics for periodontitis, J Periodontal Res, 57, 219, 10.1111/jre.12950
Han, 2021, Salivary Outer Membrane vesicles and DNA methylation of small extracellular vesicles as biomarkers for periodontal status: a pilot study, Int J Mol Sci, 22, 2423, 10.3390/ijms22052423
Jiao, 2021, The emerging regulatory role of circular RNAs in periodontal tissues and cells, Int J Mol Sci, 22, 4636, 10.3390/ijms22094636
Yu, 2021, CircMAP3K11 contributes to proliferation, apoptosis and migration of human periodontal ligament stem cells in inflammatory microenvironment by regulating TLR4 via miR-511 sponging, Front Pharm, 12
Zheng, 2021, CircCDK8 regulates osteogenic differentiation and apoptosis of PDLSCs by inducing ER stress/autophagy during hypoxia, Ann N Y Acad Sci, 1485, 56, 10.1111/nyas.14483
Wang, 2019, circRNA CDR1as Regulated the proliferation of human periodontal ligament stem cells under a lipopolysaccharide-induced inflammatory condition, Mediat Inflamm, 2019, 10.1155/2019/1625381
Wang, 2021, Circ_0081572 inhibits the progression of periodontitis through regulating the miR-378h/RORA axis, Arch Oral Biol, 124, 10.1016/j.archoralbio.2021.105053
Li, 2019, Circular RNA expression profile in gingival tissues identifies circ_0062491 and circ_0095812 as potential treatment targets, J Cell Biochem, 120, 14867, 10.1002/jcb.28748
Asa'ad, 2019, Role of epigenetics in alveolar bone resorption and regeneration around periodontal and peri-implant tissues, Eur J Oral Sci, 127, 477, 10.1111/eos.12657
