Epidemiological analysis of Legionnaires' disease in Scotland: a genomic study

Lancet Microbe, The - Tập 3 - Trang e835-e845 - 2022
Jamie Gorzynski1, Bryan Wee1, Melissa Llano2, Joana Alves1, Ross Cameron2, Jim McMenamin2, Andrew Smith3,4, Diane Lindsay3, J Ross Fitzgerald1
1The Roslin Institute, University of Edinburgh, Edinburgh, UK
2Public Health Scotland, Glasgow, UK
3Scottish Microbiology Reference Laboratory, Glasgow Royal Infirmary, Glasgow, UK
4College of Medical, Veterinary & Life Sciences, Glasgow Dental Hospital and School, University of Glasgow, Glasgow, UK

Tài liệu tham khảo

Cianciotto, 2013, Legionnaires' disease, 147 Baskerville, 1981, Experimental transmission of legionnaires' disease by exposure to aerosols of Legionella pneumophila, Lancet, 2, 1389, 10.1016/S0140-6736(81)92803-8 Orkis, 2018, Environmental sources of community-acquired legionnaires' disease: a review, Int J Hyg Environ Health, 221, 764, 10.1016/j.ijheh.2018.04.013 Bacigalupe, 2017, Population genomics of Legionella longbeachae and hidden complexities of infection source attribution, Emerg Infect Dis, 23, 750, 10.3201/eid2305.161165 Rangel-Frausto, 1999, Persistence of Legionella pneumophila in a hospital's water system: a 13-year survey, Infect Control Hosp Epidemiol, 20, 793, 10.1086/501586 Beauté, 2020, Healthcare-Associated Legionnaires' disease, Europe, 2008–2017, Emerg Infect Dis, 26, 2309, 10.3201/eid2610.181889 David, 2016, Evaluation of an optimal epidemiological typing scheme for Legionella pneumophila with whole-genome sequence data using validation guidelines, J Clin Microbiol, 54, 2135, 10.1128/JCM.00432-16 Raphael, 2016, Genomic resolution of outbreak-associated Legionella pneumophila serogroup 1 isolates from New York State, Appl Environ Microbiol, 82, 3582, 10.1128/AEM.00362-16 Schjørring, 2017, Genomic investigation of a suspected outbreak of Legionella pneumophila ST82 reveals undetected heterogeneity by the present gold-standard methods, Denmark, July to November 2014, Euro Surveill, 22, 10.2807/1560-7917.ES.2017.22.25.30558 David, 2017, Seeding and establishment of Legionella pneumophila in hospitals: implications for genomic investigations of nosocomial Legionnaires' disease, Clin Infect Dis, 64, 1251, 10.1093/cid/cix153 Buultjens, 2017, A supervised statistical learning approach for accurate Legionella pneumophila source attribution during outbreaks, Appl Environ Microbiol, 83, e01482, 10.1128/AEM.01482-17 McAdam, 2014, Gene flow in environmental Legionella pneumophila leads to genetic and pathogenic heterogeneity within a Legionnaires' disease outbreak, Genome Biol, 15, 504 David, 2018, Spatial structuring of a Legionella pneumophila population within the water system of a large occupational building, Microb Genom, 4 Herwaldt, 2018, Legionella: a reemerging pathogen, Curr Opin Infect Dis, 31, 325, 10.1097/QCO.0000000000000468 Bhopal, 1992, Pinpointing clusters of apparently sporadic cases of Legionnaires' disease, BMJ, 304, 1022, 10.1136/bmj.304.6833.1022 Wee, 2021, Population analysis of Legionella pneumophila reveals a basis for resistance to complement-mediated killing, Nat Commun, 12, 10.1038/s41467-021-27478-z Moran-Gilad, 2015, Design and application of a core genome multilocus sequence typing scheme for investigation of Legionnaires' disease incidents, Euro Surveill, 20, 10.2807/1560-7917.ES2015.20.28.21186 Silva, 2018, chewBBACA: a complete suite for gene-by-gene schema creation and strain identification, Microb Genom, 4 Balaban, 2019, TreeCluster: clustering biological sequences using phylogenetic trees, PLoS One, 14, 10.1371/journal.pone.0221068 Zhou, 2018, GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens, Genome Res, 28, 1395, 10.1101/gr.232397.117 Letunic, 2021, Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation, Nucleic Acids Res, 49, W293, 10.1093/nar/gkab301 David, 2016, Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently, Genome Res, 26, 1555, 10.1101/gr.209536.116 Rota, 2007, Clusters of travel-associated Legionnaires disease in Italy, Spain and France, July 2002–June 2006, Euro Surveill, 12, E3, 10.2807/esm.12.11.00744-en Mentasti, 2012, Application of Legionella pneumophila-specific quantitative real-time PCR combined with direct amplification and sequence-based typing in the diagnosis and epidemiological investigation of Legionnaires' disease, Eur J Clin Microbiol Infect Dis, 31, 2017, 10.1007/s10096-011-1535-0 Meehan, 2018, The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology, EBioMedicine, 37, 410, 10.1016/j.ebiom.2018.10.013 Wells, 2018, Insights into the long-term persistence of Legionella in facilities from whole-genome sequencing, Infect Genet Evol, 65, 200, 10.1016/j.meegid.2018.07.040 Besser, 2018, Salmonella epidemiology: a whirlwind of change, Food Microbiol, 71, 55, 10.1016/j.fm.2017.08.018 Rota, 2018, Travel-associated Legionnaires' disease: would changing cluster definition lead to the prevention of a larger number of cases?, Epidemiol Infect, 147, e62, 10.1017/S0950268818003266