Enzymes depending on the pterin molybdenum cofactor: sequence families, spectroscopic properties of molybdenum and possible cofactor-binding domains

Biochimica et Biophysica Acta (BBA) - Bioenergetics - Tập 1057 Số 2 - Trang 157-185 - 1991
John C. Wootton1, Rachel E. Nicolson2, J. Mark Cock2, Dawn E. Walters2, Julian F. Burke3, Wendy A. Doyle3, R C Bray3
1Department of Genetics, University of Leeds, U.K.
2Department of Genetics, University of Leeds, Leeds (U.K.)
3Biochemistry Laboratory, University of Sussex, Brighton (U.K.)

Tóm tắt

Từ khóa


Tài liệu tham khảo

Johnson, 1989, 1463

Spiro, 1985

Coughlan, 1980

Wray, 1989

Solomonson, 1990, Annu. Rev. Plant Physiol. Plant Mol. Biol., 41, 225, 10.1146/annurev.pp.41.060190.001301

Campbell, 1990, Trends Biochem. Sci., 15, 315, 10.1016/0968-0004(90)90021-3

Bray, 1988, Q. Rev. Biophys., 21, 299, 10.1017/S0033583500004479

Zinoni, 1986, 83, 4650

Weiner, 1988, J. Bacteriol., 170, 1505, 10.1128/jb.170.4.1505-1510.1988

McEwan, 1987, Arch. Microbiol., 147, 340, 10.1007/BF00406130

Satoh, 1987, J. Biochem., 102, 191, 10.1093/oxfordjournals.jbchem.a122032

Bastian, 1988, J. Cell. Biol., 107, 845a

Johnson, 1990, 87, 3190

Turner, 1987, Biochem. J., 243, 755, 10.1042/bj2430755

Krenitsky, 1986, Arch. Biochem. Biophys., 247, 108, 10.1016/0003-9861(86)90539-4

Lee, 1987, Genetics, 116, 55, 10.1093/genetics/116.1.55

Keith, 1987, Genetics, 116, 67, 10.1093/genetics/116.1.67

Krenitsky, 1972, Arch. Biochem. Biophys., 150, 585, 10.1016/0003-9861(72)90078-1

Darlington, 1965, Nature, 206, 599, 10.1038/206599a0

Scazzocchio, 1977, 255

Woolfolk, 1977, J. Bacteriol., 130, 1175, 10.1128/JB.130.3.1175-1191.1977

Sin, 1975, Biochim. Biophys. Acta, 410, 12, 10.1016/0005-2744(75)90203-X

Woolfolk, 1978, J. Bacteriol., 135, 422, 10.1128/JB.135.2.422-428.1978

McCord, 1985, N. Engl. J. Med., 312, 159, 10.1056/NEJM198501173120305

Harrison, 1990, Cardioscience, 1, 183

Cramer, 1983, Vol. 2, 259

Bray, 1980, Adv. Enzymol. Rel. Areas Mol. Biol., 51, 107

Bray, 1980, Vol. 2, 45

Turner, 1989, Biochem. J., 260, 563, 10.1042/bj2600563

Cramer, 1985, J. Am. Chem. Soc., 107, 8164, 10.1021/ja00312a059

Massey, 1970, J. Biol. Chem., 245, 6595, 10.1016/S0021-9258(18)62575-X

Malthouse, 1981, Biochem. J., 199, 629, 10.1042/bj1990629

Barber, 1976, Biochem. J., 153, 297, 10.1042/bj1530297

Cramer, 1981, J. Am. Chem. Soc., 103, 7721, 10.1021/ja00416a005

Wahl, 1982, J. Biol. Chem., 257, 1354, 10.1016/S0021-9258(19)68199-8

Dalton, 1976, Biochem. J., 153, 287, 10.1042/bj1530287

Wagner, 1984, Biochim. Biophys. Acta, 791, 63, 10.1016/0167-4838(84)90282-6

Ventom, 1987, DPhil. Thesis, University of Sussex, U.K.

Wahl, 1982, J. Biol. Chem., 257, 3958, 10.1016/S0021-9258(18)34876-2

Bray, 1982, Biochem. J., 203, 263, 10.1042/bj2030263

Barber, 1982, Biochemistry, 21, 3561, 10.1021/bi00258a006

Turner, 1988, DPhil, Thesis, University of Sussex, U.K.

Branzoli, 1974, J. Biol. Chem., 249, 4346, 10.1016/S0021-9258(19)42426-5

Cramer, 1984, J. Inorg. Biochem., 20, 275, 10.1016/0162-0134(84)85026-6

Coughlan, 1984, Arch. Biochem. Biophys., 229, 596, 10.1016/0003-9861(84)90192-9

Bray, 1983, Biochem. J., 211, 687, 10.1042/bj2110687

Meyer, 1986, FEMS Microbiol. Rev., 39, 161, 10.1111/j.1574-6968.1986.tb01858.x

Bray, 1983, Biochem. J., 211, 227, 10.1042/bj2110227

Cohen, 1971, J. Biol. Chem., 246, 374, 10.1016/S0021-9258(18)62501-3

George, 1989, Biochemistry, 28, 5075, 10.1021/bi00438a026

George, 1985, Biochem. J., 227, 925, 10.1042/bj2270925

George, 1989, Biochem. J., 259, 693, 10.1042/bj2590693

Godfrey, 1984, Biochem. J., 224, 601, 10.1042/bj2240601

Turner, 1988, Biochem. J., 252, 925, 10.1042/bj2520925

Cammack, 1990, Biochemistry, 29, 8410, 10.1021/bi00488a030

Kay, 1989, Biochemistry, 28, 5750, 10.1021/bi00440a008

Cramer, 1984, J. Am. Chem. Soc., 106, 1467, 10.1021/ja00317a047

Gutteridge, 1983, Biochem. J., 213, 137, 10.1042/bj2130137

Barber, 1988, Plant Physiol., 90, 70, 10.1104/pp.90.1.70

Barber, 1986, Biochemistry, 25, 8150, 10.1021/bi00373a004

Gadsby, 1987, Biochem. J., 243, 235, 10.1042/bj2430235

Prince, 1985, FEBS Lett., 189, 263, 10.1016/0014-5793(85)81036-X

Cramer, 1985, J. Inorg. Biochem., 23, 119, 10.1016/0162-0134(85)83015-4

Cleland, 1987, Inorg. Chem, 26, 1017, 10.1021/ic00254a012

Williams-Smith, 1977, Biochem. J., 167, 593, 10.1042/bj1670593

Orii, 1967, J. Biochem (Japan), 81, 163, 10.1093/oxfordjournals.jbchem.a131431

Barber, 1983, J. Biol. Chem., 258, 10839, 10.1016/S0021-9258(17)44351-1

Barber, 1977, Biochem. J., 163, 279, 10.1042/bj1630279

Barber, 1980, Arch. Biochem. Biophys., 201, 468, 10.1016/0003-9861(80)90535-4

Kay, 1990, Anal. Biochem., 184, 11, 10.1016/0003-2697(90)90003-R

Barber, 1982, Biochemistry, 21, 1638, 10.1021/bi00536a026

Porras, 1982, J. Biol. Chem., 257, 11617, 10.1016/S0021-9258(18)33807-9

Cammack, 1976, Biochem. J., 157, 469, 10.1042/bj1570469

Barber, 1987, FEBS Lett., 213, 372, 10.1016/0014-5793(87)81524-7

Kay, 1988, Biochemistry, 27, 6142, 10.1021/bi00416a047

Spence, 1988, Biochem. J., 250, 921, 10.1042/bj2500921

Cramer, 1980, 157

Vincent, 1979, Biochem. J., 177, 757, 10.1042/bj1770757

Johnson, 1980, 345

Cramer, 1985, 411

Rajagopalan, 1989, 212

Kruger, 1986, Eur. J. Biochem., 157, 121, 10.1111/j.1432-1033.1986.tb09647.x

Hawkes, 1984, Biochem. J., 219, 481, 10.1042/bj2190481

Johnson, 1980, J. Biol. Chem., 255, 1783, 10.1016/S0021-9258(19)85945-8

Kramer, 1987, J. Biol. Chem., 262, 16357, 10.1016/S0021-9258(18)49263-0

Taylor, 1989, J. Am. Chem. Soc., 111, 7664, 10.1021/ja00201a084

Larsen, 1989, J. Chem. Soc. Perkin Trans., I, 2317, 10.1039/p19890002317

Hawkes, 1984, Biochem. J., 222, 587, 10.1042/bj2220587

George, 1986, Polyhedron, 5, 587, 10.1016/S0277-5387(00)84969-4

Deistung, 1989, Biochem. J., 263, 477, 10.1042/bj2630477

Boxer, 1989, 27

Johnson, 1989, J. Clin. Invest., 83, 897, 10.1172/JCI113974

Johnson, 1987, J. Bacteriol., 169, 110, 10.1128/jb.169.1.110-116.1987

Boxer, 1987, J. Bacteriol., 169, 4678, 10.1128/jb.169.10.4678-4685.1987

Johnson, 1989, J. Biol. Chem., 264, 13440, 10.1016/S0021-9258(18)80016-3

May, 1986, J. Bacteriol., 166, 500, 10.1128/jb.166.2.500-504.1986

Ventom, 1988, Biochem. J., 255, 949, 10.1042/bj2550949

Fish, 1987, 421

Gardlik, 1987, Arch. Bioch. Biophys., 259, 363, 10.1016/0003-9861(87)90502-9

Kruger, 1987, Biochim. Biophys. Acta, 912, 357, 10.1016/0167-4838(87)90040-9

Kruger, 1987, FEMS Microbiol. Lett., 48, 225, 10.1016/0378-1097(87)90166-2

Nagel, 1989, FEMS Microbiol. Lett., 60, 323, 10.1111/j.1574-6968.1989.tb03494.x

Meyer, 1988, Inorg. Chem., 27, 3899, 10.1021/ic00295a006

George, 1988, Biochemistry, 27, 3603, 10.1021/bi00410a011

Kusthardt, 1987, J. Am. Chem. Soc., 109, 7926, 10.1021/ja00259a076

Bray, 1966, Nature, 212, 467, 10.1038/212467a0

Hille, 1989, Inorg. Chem., 28, 4018, 10.1021/ic00320a016

Flood, 1986, PhD Thesis, University of Manchester, U.K.

Tullius, 1979, J. Am. Chem. Soc., 101, 2776, 10.1021/ja00504a069

Bordas, 1980, Biochem. J., 191, 499, 10.1042/bj1910499

Bray, 1980, Vol. 2, 45

Howes, 1990, Biochemistry, 29, 6120, 10.1021/bi00478a002

Guiard, 1977, Eur. J. Biochem., 74, 181, 10.1111/j.1432-1033.1977.tb11379.x

McPherson, 1984, FEBS Lett., 177, 260, 10.1016/0014-5793(84)81295-8

Massey, 1986, Biochemistry, 25, 8095, 10.1021/bi00372a045

Nishino, 1989, J. Biol. Chem., 264, 5468, 10.1016/S0021-9258(18)83568-2

Nishino, 1982, J. Biol. Chem., 257, 7348, 10.1016/S0021-9258(18)34383-7

Barber, 1986, J. Biol. Chem., 261, 4562, 10.1016/S0021-9258(17)38538-1

Kinghorn, 1989, 385

Johnson, 1977, J. Biol. Chem., 252, 2017, 10.1016/S0021-9258(18)71858-9

Avis, 1954, Nature, 173, 1230, 10.1038/1731230a0

Rodrigues, 1985, 55

Doolittle, 1990, Methods Enzymol., 183, 99, 10.1016/0076-6879(90)83008-W

Feng, 1987, J. Mol. Evol., 25, 351, 10.1007/BF02603120

Akrigg, 1988, Nature, 335, 745, 10.1038/335745a0

Taylor, 1988, Protein Engin., 2, 77, 10.1093/protein/2.2.77

Reeck, 1987, Cell, 50, 667, 10.1016/0092-8674(87)90322-9

Rossmann, 1982, Annu. Rev. Biochem., 50, 497, 10.1146/annurev.bi.50.070181.002433

Wilson, 1977, Annu. Rev. Biochem., 46, 573, 10.1146/annurev.bi.46.070177.003041

Clothia, 1987, 52, 399

Doolittle, 1981, Science, 214, 149, 10.1126/science.7280687

Slice, 1990, J. Biol. Chem., 265, 256, 10.1016/S0021-9258(19)40224-X

Liao, 1990, J. Biol. Chem., 265, 6528, 10.1016/S0021-9258(19)39176-8

Carter, 1988, Nature, 332, 564, 10.1038/332564a0

Blundell, 1987, Nature, 326, 347, 10.1038/326347a0

Gribskov, 1988, Comput. Appl. Biosci., 4, 61

Gilbert, 1987, 52, 901

Go, 1987, 52, 915

Holland, 1987, Biosystems, 20, 181, 10.1016/0303-2647(87)90044-X

Dayhoff, 1978, Vol. 5, 345

Wilbur, 1983, 80, 726

Lipman, 1985, Science, 227, 1435, 10.1126/science.2983426

Pearson, 1988, 85, 2444

Needleman, 1970, J. Mol. Biol., 48, 443, 10.1016/0022-2836(70)90057-4

Sellers, 1974, SIAM, J. Appl. Math., 26, 787, 10.1137/0126070

Smith, 1981, J. Mol. Biol., 147, 195, 10.1016/0022-2836(81)90087-5

Altschul, 1986, Bull. Math. Biol., 48, 603, 10.1007/BF02462326

Miller, 1988, Bull. Math. Biol., 50, 97, 10.1007/BF02459948

Fickett, 1984, Nucleic Acids Res., 12, 175, 10.1093/nar/12.1Part1.175

Myers, 1988, Comput. Appl. Biosci., 4, 11

Spouge, 1989, SIAM, J. Appl. Math., 49, 1552, 10.1137/0149094

Johnson, 1986, J. Mol. Evol., 23, 267, 10.1007/BF02115583

Barton, 1987, J. Mol. Biol., 198, 327, 10.1016/0022-2836(87)90316-0

Taylor, 1987, Comput. Appl. Biosci., 3, 81

Altschul, 1989, SIAM J. Appl. Math., 49, 197, 10.1137/0149012

Lipman, 1989, 86, 4412

Stormo, 1982, Nucleic Acids Res., 10, 2997, 10.1093/nar/10.9.2997

Staden, 1984, Nucleic Acids Res., 12, 505, 10.1093/nar/12.1Part2.505

Gribskov, 1987, 84, 4355

Gribskov, 1990, Methods Enzymol., 183, 146, 10.1016/0076-6879(90)83011-W

Drummond, 1986, EMBO J., 5, 441, 10.1002/j.1460-2075.1986.tb04230.x

Wootton, 1989, Protein Engin., 2, 534, 10.1093/protein/2.7.535

Swets, 1988, Science, 240, 1285, 10.1126/science.3287615

Bleasby, 1990, Protein Engin., 3, 153, 10.1093/protein/3.3.153

Collins, 1990, Methods Enzymol., 183, 474, 10.1016/0076-6879(90)83032-5

Lipman, 1984, Nucleic Acids Res., 12, 215, 10.1093/nar/12.1Part1.215

Palau, 1982, Int. J. Pept. Protein Res., 19, 394, 10.1111/j.1399-3011.1982.tb02620.x

Kabsch, 1983, FEBS Lett., 155, 179, 10.1016/0014-5793(82)80597-8

Sodergren, 1988, J. Bacteriol., 170, 1721, 10.1128/jb.170.4.1721-1729.1988

Blasco, 1989, Mol. Gen. Genet., 218, 249, 10.1007/BF00331275

Iobbi, 1987, Eur. J. Biochem., 168, 451, 10.1111/j.1432-1033.1987.tb13438.x

Bonnefoy, 1987, Mol. Microbiol., 1, 143, 10.1111/j.1365-2958.1987.tb00506.x

Bilous, 1988, Molecular Microbiol., 2, 785, 10.1111/j.1365-2958.1988.tb00090.x

Pierson, 1990, J. Bacteriol., 172, 2194, 10.1128/jb.172.4.2194-2198.1990

Shuber, 1986, J. Biol. Chem., 261, 12942, 10.1016/S0021-9258(18)69253-1

Esposti, 1989, Biochim. Biophys. Acta, 977, 249, 10.1016/S0005-2728(89)80079-9

Morpeth, 1985, Biochemistry, 24, 40, 10.1021/bi00322a007

Grosjean, 1982, Gene, 18, 199, 10.1016/0378-1119(82)90157-3

Chaudhry, 1983, J. Bacteriol., 154, 387, 10.1128/JB.154.1.387-394.1983

Graham, 1980, Biochem. Soc. Trans., 8, 329, 10.1042/bst0080329a

Lundquist, 1989, J. Biol. Chem., 264, 7078, 10.1016/S0021-9258(18)83543-8

Pflugrath, 1988, J. Mol. Biol., 200, 163, 10.1016/0022-2836(88)90341-5

Wievenga, 1986, J. Mol. Biol., 187, 101, 10.1016/0022-2836(86)90409-2

Bruschi, 1988, FEMS Microbiol. Rev., 54, 155, 10.1111/j.1574-6968.1988.tb02741.x

Stout, 1988, 85, 1020

Adman, 1976, J. Biol. Chem., 251, 3801, 10.1016/S0021-9258(17)33415-4

Stout, 1988, J. Biol. Chem., 263, 9256, 10.1016/S0021-9258(19)76532-6

Stout, 1989, J. Mol. Biol., 205, 545, 10.1016/0022-2836(89)90225-8

Martin, 1990, 87, 598

Beinert, 1983, Arch. Biochem. Biophys., 222, 333, 10.1016/0003-9861(83)90531-3

Johnson, 1985, J. Biol. Chem., 260, 5456, 10.1016/S0021-9258(18)89044-5

Robbins, 1989, 86, 3639

Morgan, 1984, FEBS Lett., 167, 137, 10.1016/0014-5793(84)80848-0

Schauer, 1986, J. Bacteriol., 165, 405, 10.1128/jb.165.2.405-411.1986

Le, 1983, EMBO J., 2, 1909, 10.1002/j.1460-2075.1983.tb01678.x

Cheng, 1986, 83, 6825

Gowir, 1989, Plant Physiol., 90, 792, 10.1104/pp.90.3.792

Choi, 1989, Plant Mol. Biol., 13, 731, 10.1007/BF00016030

Cheng, 1988, EMBO J., 7, 3309, 10.1002/j.1460-2075.1988.tb03201.x

Crawford, 1988, 85, 5006

Daniel-Vedele, 1989, Gene, 85, 371, 10.1016/0378-1119(89)90430-7

Vaucheret, 1989, Mol. Gen. Genet., 216, 10, 10.1007/BF00332224

Riley, 1989, Mol. Biol. Evol., 6, 33

Houde, 1989, Gene, 85, 391, 10.1016/0378-1119(89)90432-0

Yamazaki, 1987, 425

Amaya, 1990, J. Biol. Chem., 265, 14170, 10.1016/S0021-9258(18)77283-9

Neame, 1989, J. Biol. Chem., 264, 20894, 10.1016/S0021-9258(19)30020-1

Gilbert, 1985, Science, 228, 823, 10.1126/science.4001923

Calza, 1987, Mol. Gen. Genet., 209, 552, 10.1007/BF00331162

Barber, 1990, J. Biol. Chem., 265, 20912, 10.1016/S0021-9258(17)45303-8

Nobrega, 1971, J. Biol. Chem., 246, 1706, 10.1016/S0021-9258(18)62368-3

Matsubara, 1968, J. Biol. Chem., 243, 1732, 10.1016/S0021-9258(18)93507-6

Tsukihara, 1981, J. Biochem., 90, 1763, 10.1093/oxfordjournals.jbchem.a133654

Tsutsui, 1983, J. Biochem., 94, 299, 10.1093/oxfordjournals.jbchem.a134343

Ozols, 1985, J. Biol. Chem., 260, 11953, 10.1016/S0021-9258(17)38970-6

Yubisui, 1984, J. Biochem., 96, 579, 10.1093/oxfordjournals.jbchem.a134871

Müller, 1978, Mol. Gen. Genet, 161, 67, 10.1007/BF00266616

Gabard, 1987, Mol. Gen. Genet., 209, 596, 10.1007/BF00331169

Derynk, 1983, Nucleic Acids Res., 11, 1819, 10.1093/nar/11.6.1819

Koenig, 1990, J. Bacteriol., 172, 5999, 10.1128/jb.172.10.5999-6009.1990

Gray, 1991, Genetics, 127, 139, 10.1093/genetics/127.1.139

Ho, 1989, Gene, 77, 51, 10.1016/0378-1119(89)90358-2

Saunders, 1989, Nucleic Acids Res., 17, 6205, 10.1093/nar/17.15.6205

Engels, 1989, 437

Blackman, 1989, EMBO J., 8, 211, 10.1002/j.1460-2075.1989.tb03366.x

Bray, 1990

Luckow, 1988, Biotechnology, 6, 47, 10.1038/nbt0188-47