Engineering a tRNA and aminoacyl-tRNA synthetase for the site-specific incorporation of unnatural amino acids into proteins <i>in vivo</i>

David R. Liu1, Thomas J. Magliery1, Miro Pastrnak1, Peter G. Schultz1
1Howard Hughes Medical Institute, Department of Chemistry, and Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720

Tóm tắt

In an effort to expand the scope of protein mutagenesis, we have completed the first steps toward a general method to allow the site-specific incorporation of unnatural amino acids into proteins in vivo . Our approach involves the generation of an “orthogonal” suppressor tRNA that is uniquely acylated in Escherichia coli by an engineered aminoacyl-tRNA synthetase with the desired unnatural amino acid. To this end, eight mutations were introduced into tRNA 2 Gln based on an analysis of the x-ray crystal structure of the glutaminyl-tRNA aminoacyl synthetase (GlnRS)–tRNA 2 Gln complex and on previous biochemical data. The resulting tRNA satisfies the minimal requirements for the delivery of an unnatural amino acid: it is not acylated by any endogenous E. coli aminoacyl-tRNA synthetase including GlnRS, and it functions efficiently in protein translation. Repeated rounds of DNA shuffling and oligonucleotide-directed mutagenesis followed by genetic selection resulted in mutant GlnRS enzymes that efficiently acylate the engineered tRNA with glutamine in vitro . The mutant GlnRS and engineered tRNA also constitute a functional synthetase–tRNA pair in vivo . The nature of the GlnRS mutations, which occur both at the protein–tRNA interface and at sites further away, is discussed.

Từ khóa


Tài liệu tham khảo

10.1146/annurev.bb.24.060195.002251

10.1093/genetics/120.3.637

10.1021/ja961216x

10.1266/jjg.63.237

H-U Thomann, M Ibba, K-W Hong, D Söll Bio/Technology 14, 50–55 (1996).

10.1093/nar/18.1.83

10.1073/pnas.90.5.2010

10.1016/S1074-5521(96)90169-6

Thorson J. S. Cornish V. W. Barrett J. E. Cload S. T. Yano T. & Schultz P. G. (1997) Methods in Molecular Biology—Protein Synthesis: Methods and Protocols in press.

10.1038/nbt0396-315

F Neidhardt, H E Umbarger Escherichia coli and Salmonella, ed F Neidhardt (Am. Soc. Microbiol., Washington, DC) 1, 13–16 (1996).

10.3891/acta.chem.scand.24-2737

T Ikemura Mol Biol Evol 2, 13–34 (1985).

10.1016/S0076-6879(85)13011-9

10.1093/nar/23.15.2886

F M Ausubel, R Brent, R E Kingston, D D Moore, J G Seidman, J A Smith, K Struhl Current Protocols in Molecular Biology (Wiley, New York) 1, 8.5.7–8.5.7 (1995).

10.1139/o80-029

10.1126/science.271.5252.1086

10.1038/352213a0

10.1126/science.2047877

10.1002/j.1460-2075.1992.tb05509.x

10.1038/352258a0

10.1016/0300-9084(91)90184-3

10.1128/jb.145.2.704-712.1981

10.1021/ja00167a088

10.1016/0005-2787(74)90120-8

10.1073/pnas.91.22.10747

10.1006/jmbi.1996.0128

10.1126/science.2686030

10.1016/S0079-6603(08)60134-8

10.1126/science.7824948

10.1016/0005-2736(91)90029-8

10.1128/jb.178.12.3447-3456.1996

10.1021/bi951702h

10.1073/pnas.91.1.291

10.1073/pnas.93.14.6953

10.1006/jmbi.1994.1425

10.1146/annurev.bi.48.070179.003125

10.1126/science.3144042

Liu D. R. Magliery T. J. & Schultz P. G. (1997) Chem. Biol. in press.