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Endornaviruses: các virus dsRNA lâu dài với đặc tính ký sinh trong các eukaryote đa dạng
Tóm tắt
Endornavirus là những virus RNA hai chuỗi (dsRNA) độc đáo, bền bỉ, có tính chất ký sinh, lây nhiễm cho nhiều eukaryote khác nhau, chẳng hạn như thực vật, nấm và oomycetes. Endornavirus chứa một bộ gen dsRNA tuyến tính có chiều dài khoảng 10 đến 17 kbp và được phân loại trong họ Endornaviridae, bao gồm hai chi, Alphaendornavirus và Betaendornavirus. Các endornavirus mã hóa một khung đọc mở dài duy nhất chứa khoảng 3200 đến 5800 dư lượng axit amin của helicase RNA virus bảo tồn và các miền RNA phụ thuộc RNA polymerase, và một số endornavirus chứa một vết cắt đặc hiệu vị trí trong sợi mã hóa của bộ gen dsRNA của chúng. Virus thực vật cấp tính sinh sản nhanh chóng và hệ thống, cuối cùng giết chết cây chủ, và sau đó được truyền qua theo chiều ngang. Ngược lại, endornavirus thực vật có một số đặc tính bền bỉ (ký sinh) chung: số lượng bản sao thấp ổn định trong cây chủ, không có tác động rõ rệt đến cây chủ, và truyền qua hiệu quả theo chiều dọc thông qua giao tử. Endornavirus thực vật có khả năng duy trì trong các cây chủ hàng trăm thế hệ, vì vậy cây chủ phải quản lý nghiêm ngặt sự sinh sản của chúng. Trong khi quá trình giảm RNA hoạt động như một hệ thống phòng thủ chống lại các virus cấp tính trong thực vật, nó có thể cần thiết cho sự nhiễm trùng bền bỉ (chu kỳ sống ký sinh) của endornavirus. Quy trình này bao gồm việc quản lý nghiêm ngặt số lượng virus bản sao thấp (sinh sản ổn định trước mỗi lần phân chia tế bào chủ) và sự truyền virus hiệu quả đến thế hệ tiếp theo.
Từ khóa
#Endornavirus #virus dsRNA #Eukaryota #thực vật #nấm #oomycetes #ký sinh #sinh sản bền bỉTài liệu tham khảo
Dodds JA, Morris TJ, Jordan RL (1984) Plant viral double-stranded RNA. Annu Rev Phytopathol 22:151–168
Boccardo G, Lisa V, Luisini E, Milne RG (1987) Cryptic plant viruses. Adv Virus Res 32:171–214
Brown GG, Finnegan PM (1989) RNA plasmids. Int Rev Cytol 117:1–56
Natsuaki T, Yamashita S, Doi Y, Yora K (1979) Ann Phytopath Soc Japan 45:313–320
Valverde RA, Nameth S, Abdallha O, Al-Musa O, Desjardins P, Dodds JA (1990) Indigenous double-stranded RNA from pepper (Capsicum annuum). Plant Sci 67:195–201
Fukuhara T, Moriyama H, Pak JK, Hyakutake T, Nitta T (1993) Enigmatic double-stranded RNA in Japonica rice. Plant Mol Biol 21:1121–1130
Ghabrial SA, Nibert ML, Maiss E, Lesker T, Baker TS, Tao YJ (2012) Family partitiviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 523–534
Fukuhara T, Gibbs MJ (2012) Family endornaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 519–521
Wakarchuk DA, Hamilton RI (1985) Cellular double-stranded RNA in Phaseolus vulgaris. Plant Mol Biol 5:55–63
Zabalgogeazcoa IA, Gildow FE (1992) Double-stranded ribonucleic acid in ‘Barsoy’ barley. Plant Sci 83:187–194
Wakarchuk DA, Hamilton RI (1990) Partial nucleotide sequence from enigmatic dsRNAs in Phaseolus vulgaris. Plant Mol Biol 14:637–639
Pfeiffer P (1998) Nucleotide sequence, genetic organization and expression strategy of the double-stranded RNA associated with the ‘447’ cytoplasmic male sterility in Vicia faba. J Gen Virol 79:2349–2358
Moriyama H, Nitta T, Fukuhara T (1995) Double-stranded RNA in rice: a novel RNA replicon in plants. Mol Gen Genet 248:364–369
Moriyama H, Horiuchi H, Koga R, Fukuhara T (1999) Molecular characterization of two endogenous double-stranded RNAs in rice and their inheritance by interspecific hybrids. J Biol Chem 274:6882–6888
Gibbs MJ, Koga K, Moriyama H, Pfeiffer P, Fukuhara T (2000) Phylogenetic analysis of some large double-stranded RNA replicons from plants suggests they evolved from a defective single-stranded RNA virus. J Gen Virol 81:227–233
Gibbs MJ, Pfeiffer P, Fukuhara T (2005) Genus Endornavirus. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: Eighth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 603–605
Ghabrial S, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384
Dolja VV, Koonin EV (2012) Capsid-Less RNA Viruses. Wiley, Chichester. https://doi.org/10.1002/9780470015902.a0023269
Khalifa ME, Pearson MN (2014) Molecular characterization of an endornavirus infecting the phytopathogen Sclerotinia sclerotiorum. Virus Res 189:303–309
Edwardson JR, Bond DA, Christie RG (1976) Cytoplasmic sterility factors in Vicia faba L. Genetics 82:443–449
Grill LK, Garger SJ (1981) Identification and characterization of double-stranded RNA associated with cytoplasmic male sterility in Vicia faba. Proc Natl Acad Sci USA 78:7043–7046
Turpen T, Garger SJ, Grill LK (1988) On the mechanism of cytoplasmic male sterility in the 447 line of Vicia faba. Plant Mol Biol 10:489–497
Moriyama H, Horiuchi H, Nitta T, Fukuhara T (1999) Unusual inheritance of evolutionarily-related double-stranded RNAs in interspecific hybrid between rice plants Oryza sativa and Oryza rufipogon. Plant Mol Biol 39:1127–1136
Horiuchi H, Moriyama H, Fukuhara T (2003) Inheritance of Oryza sativa endornavirus in F1 and F2 hybrids between japonica and indica rice. Genes Genet Syst 78:229–234
Moriyama H, Kanaya K, Wang JZ, Nitta T, Fukuhara T (1996) Stringently and developmentally regulated levels of a cytoplasmic double-stranded RNA and its high-efficiency transmission via egg and pollen in rice. Plant Mol Biol 31:713–719
Zabalgogeazcoa IA, Cox-Fostre DC, Gildow FE (1993) Pedigree analysis of the transmission of a double-stranded RNA in barley cultivars. Plant Sci 91:45–53
Candresse T, Marais A, Sorrentino R, Faure C, Theil S, Cadot V, Rolland M, Villemot J, Rabenstein F (2016) Complete genomic sequence of barley (Hordeum vulgare) endornavirus (HvEV) determined by next-generation sequencing. Arch Virol 161:741–743
Mackenzie SA, Pring DR, Bassett MJ (1988) Large double-stranded RNA molecules in Phaseolus vulgaris L. are not associated with cytoplasmic male sterility. Theor Appl Genet 76:59–63
Okada R, Yong CK, Valverde RA, Sabanadzovic S, Aoki N, Hotate S, Kiyota E, Moriyama H, Fukuhara T (2013) Molecular characterization of two evolutionally distinct endornaviruses co-infecting common bean (Phaseolus vulgaris). J Gen Virol 94:2191–2199
Valverde RA, Fontenot JF (1991) Variation in double-stranded ribonucleic acid among pepper cultivars. J Am Soc Hort Sci 116:903–905
Okada R, Kiyota E, Sabanadzovic S, Moriyama H, Fukuhara T, Saha P, Roossinck MJ, Severin A, Valverde RA (2011) Bell pepper endornavirus: molecular and biological properties and occurrence in the genus Capsicum. J Gen Virol 92:2664–2673
Lim S, Kim KH, Zhao F, Yoo RH, Igori D, Lee S-H, Moon JS (2015) Complete genome sequence of a novel endornavirus isolated from hot pepper. Arch Virol 160:3153–3156
Coutts RHA (2005) First report of an endornavirus in the Cucurbitaceae. Virus Genes 31:361–362
Sabanadzovic S, Wintermantel WM, Valverde RA, McCreight JD, Aboughanem-Sabanadzovic N (2016) Cucumis melo endornavirus: genome organization, host range and co-divergence with the host. Virus Res 214:49–58
Fukuhara T, Koga R, Aoki N, Yuki C, Yamamoto N, Oyama N, Udagawa T, Horiuchi H, Miyazaki S, Higashi Y, Takeshita M, Ikeda K, Arakawa M, Matsumoto N, Moriyama H (2006) The wide distribution of endornaviruses, large double-stranded RNA replicons with plasmid-like properties. Arch Virol 151:995–1002
Kwon S-J, Tan S, Vidalakis G (2014) Complete genome sequence and genome organization of an endornavirus from bottle gourd (Lagenaria siceraria) in California U. S. A. Virus Genes 49:163–168
Peng X, Pan H, Muhammad A, An H, Fang S, Li W, Zhang S (2018) Complete genome sequence of a new strain of Lagenaria siceraria endornavirus from China. Arch Virol 163:805–808
Villanueva F, Sabanadzovic S, Valverde RA, Navas-Castillo J (2012) Complete genome sequence of a double-stranded RNA virus from avocado. J Virol 86:1282–1283
Khankhum S, Valverde RA (2018) Physiological traits of endornavirus-infected and endornavirus-free common bean (Phaseolus vulgaris) cv Black Turtle Soup. Arch Virol 163:1051–1056
Nuss DL, Koltin Y (1990) Significance of dsRNA genetic elements in plant pathogenic fungi. Annu Rev Phytopathol 28:37–58
Ghabrial SA (1994) New developments in fungal virology. Adv Virus Res 43:303–388
Ghabrial SA, Castón JR, Jiang D, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479–480:356–368
Osaki H, Nakamura H, Sasaki A, Matsumoto N, Yoshida K (2006) An endornavirus from a hypovirulent strain of the violet root rot fungus, Helicobasidium mompa. Virus Res 118:143–149
Hacker CV, Brasier CM, Buck KW (2005) A double-stranded RNA from a Phytophthora species is related to the plant endornaviruses and contains a putative UDP glycosyltransferase gene. J Gen Virol 86:1561–1570
Liu H, Fu Y, Xie J, Cheng J, Ghabrial SA, Li G, Yi X, Jiang D (2012) Discovery of novel dsRNA viral sequences by in silico cloning and implications for viral diversity, host range and evolution. PLoS ONE 7:e42147
Wylie SJ, Adams M, Chalam C, Kreuze J, López-Moya JJ, Ohshima K, Praveen S, Rabenstein F, Stenger D, Wang A, Zerbini FM, ICTV Report Consortium (2017) ICTV Virus Taxonomy Profile: Potyviridae. J Gen Virol 98:352–354
Pfeiffer P, Jung JL, Heitzler J, Keith G (1993) Unusual structure of the double-stranded RNA associated with the ‘447’ cytoplasmic male sterility in Vicia faba. J Gen Virol 74:1167–1173
Fukuhara T, Moriyama H, Nitta T (1995) The unusual structure of a novel RNA replicon in rice. J Biol Chem 270:18147–18149
Lefebvre A, Scalla R, Pfeiffer P (1990) The double-stranded RNA associated with the `447′ cytoplasmic male sterility in Vicia faba is packaged together with its replicase in cytoplasmic membranous vesicles. Plant Mol Biol 14:477–490
Horiuchi H, Udagawa T, Koga K, Moriyama H, Fukuhara T (2001) RNA-dependent RNA polymerase activity associated with endogenous double-stranded RNA in rice. Plant Cell Physiol 42:197–203
Napoli C, Lemieux C, Jorgensen R (1990) Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans. Plant Cell 2:279–289
Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391:806–811
Romano N, Macino G (1992) Quelling: transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences. Mol Microbiol 6:3343–3353
Baulcombe D (2004) RNA silencing in plants. Nature 431:356–363
Lindbo JA, Dougherty WG (2005) Plant pathology and RNAi: a brief history. Annu Rev Phytopathol 43:191–204
Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ et al (2006) Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet 38:721–725
Fukudome A, Fukuhara T (2017) Plant Dicer-like proteins: double-stranded RNA-cleaving enzymes for small RNA biogenesis. J Plant Res 130:33–44
Fagard M, Boutet S, Morel JB, Bellini C, Vaucheret H (2000) AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals. Proc Natl Acad Sci USA 97:11650–11654
Baumberger N, Baulcombe DC (2005) Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci USA 102:11928–11933
Bouche N, Lauressergues D, Gasciolli V, Vaucheret H (2006) An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J 25:3347–3356
Donaire L, Wang Y, Gonzalez-Ibeas D, Mayer KF, Aranda MA, Llave C (2009) Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes. Virology 392:203–214
Nagano H, Fukudome A, Hiraguri A, Moriyama H, Fukuhara T (2014) Distinct substrate specificities of Arabidopsis DCL3 and DCL4. Nucleic Acids Res 42:1845–1856
Wang XB, Jovel J, Udomporn P, Wang Y, Wu Q, Li WX, Gasciolli V, Vaucheret H, Ding SW (2011) The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell 23:1625–1638
Garcia-Ruiz H, Carbonell A, Hoyer JS, Fahlgren N, Gilbert KB, Takeda A, Giampetruzzi A, Garcia Ruiz MT, McGinn MG, Lowery N, Martinez Baladejo MT, Carrington JC (2015) Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection. PLoS Pathog 11:e1004755
Kasschau KD, Carrington JC (1998) A counterdefensive strategy of plant viruses: suppression of posttranscriptional gene silencing. Cell 95:461–470
Roth BM, Pruss GJ, Vance VB (2004) Plant viral suppressors of RNA silencing. Virus Res 102:97–108
Csorba T, Kontra L, Burgyán J (2015) Viral silencing suppressors: tools forged to fine-tune host-pathogen coexistence. Virology 479–480:85–103
Urayama S, Moriyama H, Aoki N, Nakazawa Y, Okada R, Kiyota E, Miki D, Shimamoto K, Fukuhara T (2010) Knock-down of OsDCL2 in rice negatively affects maintenance of the endogenous dsRNA virus, Oryza sativa endornavirus. Plant Cell Physiol 51:58–67
Sela N, Luria N, Dombrovsky A (2012) Genome assembly of bell pepper endornavirus from small RNA. J Virol 86:7721
Nordenstedt N, Marcenaro D, Chilagane D, Mwaipopo B, Rajamäki ML, Nchimbi-Msolla S, Njau PJR, Mbanzibwa DR, Valkonen JPT (2017) Pathogenic seedborne viruses are rare but Phaseolus vulgaris endornaviruses are common in bean varieties grown in Nicaragua and Tanzania. PLoS ONE 12:e0178242
Manche L, Green SR, Schmedt C, Mathews MB (1992) Interactions between double-stranded RNA regulators and the protein kinase DAI. Mol Cell Biol 12:5238–5248
Stark GR, Kerr IM, Williams BR, Silverman RH, Schreiber RD (1998) How cells respond to interferons. Annu Rev Biochem 67:227–264
Okada R, Kiyota E, Moriyama H, Fukuhara T, Valverde RA (2014) A new endornavirus species infecting Malabar spinach (Basella alba L.). Arch Virol 159:807–809
Okada R, Kiyota K, Moriyama H, Fukuhara T, Valverde RA (2017) Molecular and biological properties of an endornavirus infecting winged bean (Psophocarpus tetragonolobus). Virus Genes 53:141–145
Debat HJ, Grabiale M, Aguilera PM, Bubillo R, Zapata PD, Marti DA, Ducasse DA (2014) The complete genome of a putative endornavirus identified in yerba mate (Ilex paraguariensis St. Hil.). Virus Genes 49:348–350
Du Z, Lin W, Qiu P, Liu X, Guo L, Wu K, Zhang S, Wu Z (2016) Complete sequence of a double-stranded RNA from the phytopathogenic fungus Erysiphe cichoracearum that might represent a novel endornavirus. Arch Virol 161:2343–2346
Espach Y, Maree HJ, Burger JT (2012) Complete genome of a novel endornavirus assembled from next-generation sequence data. J Virol 86:13142
Li W, Zhang T, Sun H, Deng Y, Zhang A, Chen H, Wang K (2014) Complete genome sequence of a novel endornavirus in the wheat sharp eyespot pathogen Rhizoctonia cerealis. Arch Virol 159:1213–1216
Shang HH, Zhong J, Zhang RJ, Chen CY, Gao BD, Zhu HJ (2015) Genome sequence of a novel endornavirus from the phytopathogenic fungus Alternaria brassicicola. Arch Virol 160:1827–1830
Hao F, Zhou Z, Wu M, Li G (2017) Molecular characterization of a novel endornavirus from the phytopathogenic fungus Botritis cinerea. Arch Virol 162:313–316
Tuomivirta TT, Kaitera J, Hantula J (2009) A novel putative virus of Gremmeniella abietina type B (Ascomycota: Helotiaceae) has a composite genome with endornavirus affinities. J Gen Virol 90:2299–2305
Stielow B, Klenk HP, Menzel W (2011) Complete genome sequence of the first endornavirus from the ascocarp of the ectomycorrhizal fungus Tuber aestivum Vittad. Arch Virol 156:343–345