Endophytic bacteria from Ilex paraguariensis shoot cultures: localization, characterization, and response to isothiazolone biocides

Bacon C, Hinton D (2006) Bacterial endophytes: the endophytic niche, its occupants, and its utility. In: Gnanamanickam SS (ed) Plant-associated bacteria. Springer, The Netherlands, pp 155–194 Ballantyne B, Jordan ST (2004) Chemistry of biocides. In: Marrs TC, Ballantyne B (eds) Pesticide toxicology and international regulation. Wiley, London, pp 365–410 Berg G, Egamberdieva D, Lugtenberg B, Hagemann M (2010) Symbiotic plant–microbe interactions: stress protection, plant growth promotion, and biocontrol by Stenotrophomonas. In: Seckbach J, Grube M (eds) Symbioses and stress: joint ventures in biology. Cellular origin, life in extreme habitats and astrobiology, vol. 17. Springer, The Netherlands Berthouly M, Etienne H (2005) Temporary immersion system: a new concept for use liquid medium in mass propagation. In: Hvoslef-Eide A, Preil W (eds) Liquid culture system for in vitro plant propagation. Springer, The Netherlands, pp 165–195 Chun J, Lee JH, Jung Y, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261 Clinical and Laboratory Standards Institute (2009) Performance standards for antimicrobial susceptibility testing; nineteenth informational supplement M100-S19. CLSI, Wayne Collavino M, Sansberro P, Mroginski L, Aguilar M (2010) Comparison of in vitro solubilization activity of diverse bacteria native to acid soil and its ability to promote Phaseolus vulgaris plant growth. Biol Fertil Soils 46:727–736 Collier PJ, Austin P, Gilbert P (1991) Isothiazolone biocides: enzyme-inhibiting pro-drugs. Int J Pharm 16:195–201. doi:10.1016/0378-5173(91)90237-I Crossman L, Gould V, Dow J, Vernikos G, Okazaki A, Sebahia M, Saunders D, Arrowsmith C, Carver T, Peters N, Adlem E, Kerhornou A, Lord A, Murphy L, Seeger K, Squares R, Rutter S, Quail M, Rajandream A, Harris D, Churcher C, Bentley S, Parkhill J, Thomson N, Avison M (2008) The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants. Genome Biology 9:74–86. doi:10.1186/gb-2008-9-4-r74 Dawes CJ (1988) Introduction to Biological Electron Microscopy: Theory and Techniques, 3rd edn. Ladd Research Industries, Burlington, Vermont, USA, p 315 Falkiner FR (1997) Antibiotics in plant tissue culture and micropropagation—what are we aiming at? In: Cassells AC (ed) Pathogen and microbial contamination management in micropropagation. Kluwer, Dordrecht, pp 155–160 George MW, Tripepi RR (2001) Plant Preservative Mixture ™ can affect shoot regeneration from leaf explants of Chrysanthemum, European birch, and Rhododendron. HortSci 36:768–769 Kan FL, Chen ZY, Wang ET, Tian CF, Sui XH, Chen WX (2007) Characterization of symbiotic and endophytic bacteria isolated from root nodules of herbaceous legumes grown in Qinghai-Tibet plateau and in other zones of China. Arch Microbiol 188:103–115 Lata H, Li XC, Silva B, Moraes RM, Halda-Alija L (2006) Identification of IAA-producing endophytic bacteria from micropropagated Echinacea plants using 16S rRNA sequencing. Plant Cell Tiss Org Cult 85:353–359 Leifert C, Ritchie JY, Waities WM (1991) Contaminants of plant-tissue and cell cultures. World J Microb Biotechnol 7:452–469 Levitt J, Naidorf I, Shugaevsky P (1955) The undetected anaerobe in endodontics: a sensitive medium for detection of both aerobes and anaerobes. New York J Dentist 25:377–382 Luna C, Collavino M, Mroginski L, Sansberro P (2008) Identification and control of bacterial contaminants from Ilex dumosa nodal segments culture in a temporal immersion bioreactor system using 16S rDNA analysis. Plant Cell Tiss Organ Cult 95:13–19. doi:10.1007/s11240-008-9408-7 Luna C, Sansberro P, Mroginski L, Tarragó J (2003) Micropropagation of Ilex dumosa (Aquifoliaceae) from nodal segments in a tissue culture system. Biocell 27:205–212 Minkwitz A, Berg G (2001) Comparison of antifungal activities and 16S ribosomal DNA sequences of clinical and environmental isolates of Stenotrophomonas maltophilia. J Clin Microbiol 39:139–145 Miyazaki J, Tan BH, Errington SG (2010) Eradication of endophytic bacteria via treatment of axillary buds of Petunia hybrid using Plant Preservative Mixture (PPM™). Plant Cell Tiss Organ Cult 102:365–372. doi:10.1007/s11240-010-9741-5 Murashige T, Skoog F (1962) A revised medium for rapid growth and bio-assays with tobacco tissue cultures. Physiol Plant 15:473–497 Paul AL, Semer C, Kucharek T, Ferl R (2001) The fungicidal and phytotoxic properties of benomyl and PPM in supplemented agar media supporting transgenic Arabidopsis plants for a space shuttle flight experiment. Appl Microbiol Biotechnol 55:480–485 Reed BM, Mentzer J, Tanprasert P, Yu X (1998) Internal bacterial contamination of micropropagated hazelnut: identification and antibiotic treatment. Plant Cell Tiss Org Cult 52:67–70 Rowntree JK (2006) Development of novel methods for the initiation of in vitro bryophyte cultures for conservation. Plant Cell Tiss Org Cult 87:191–201 Taghavi S, Garafola C, Monchy S, Newman L, Hoffman A, Weyens N, Barac T, Vangronsveld J, van der Lelie D (2009) Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees. Appl Environ Microbiol 75:748–757. doi:10.1128/AEM.02239-08 Weisburg WG, Barns SM, Pelletier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703 Whipps J (2001) Microbial interactions and biocontrol in the rhizosphere. J Exp Bot 52:487–511 Williams T (2007) The mechanism of action of isothiazolone biocides. Power Plant Chem 9:14–22 Whitby P, Carter K, Burns J, Royall J, LiPuma J, Stull T (2000) Identification and detection of Stenotrophomonas malthophilia by rRNA-directed PCR. J Clin Microbiol 38:4305–4309