Emerging nanotechnology-based strategies for the identification of microbial pathogenesis

Taubes, 2008, The bacteria fight back, Science, 321, 356, 10.1126/science.321.5887.356 Batt, 2007, Materials science. Food pathogen detection, Science, 316, 1579, 10.1126/science.1140729 Martinez, 2008, Antibiotics and antibiotic resistance genes in natural environments, Science, 321, 365, 10.1126/science.1159483 Salyers, 2002, Bacterial Pathogenesis: A Molecular Approach Jain, 2005, Nanotechnology in clinical laboratory diagnostics, Clin. Chim. Acta, 358, 37, 10.1016/j.cccn.2005.03.014 Rosi, 2005, Nanostructures in biodiagnostics, Chem. Rev., 105, 1547, 10.1021/cr030067f Elghanian, 1997, Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles, Science, 277, 1078, 10.1126/science.277.5329.1078 Mirkin, 1996, A DNA-based method for rationally assembling nanoparticles into macroscopic materials, Nature, 382, 607, 10.1038/382607a0 Cirino, 2006, Detection of Chlamydia in the peripheral blood cells of normal donors using in vitro culture, immunofluorescence microscopy and flow cytometry techniques, BMC Infect. Dis., 6, 23, 10.1186/1471-2334-6-23 Ulitzur, 2000, Construction of lux bacteriophages and the determination of specific bacteria and their antibiotic sensitivities, Methods Enzymol., 305, 543, 10.1016/S0076-6879(00)05512-9 Seo, 1998, Immunomagnetic separation and flow cytometry for rapid detection of Escherichia coli O157:H7, J. Food Prot., 61, 812, 10.4315/0362-028X-61.7.812 Notzon, 2006, Evaluation of an immunomagnetic separation-real-time PCR assay for the rapid detection of Salmonella in meat, J. Food Prot., 69, 2896, 10.4315/0362-028X-69.12.2896 Houben, 2006, Interaction of pathogenic mycobacteria with the host immune system, Curr. Opin. Microbiol., 9, 76, 10.1016/j.mib.2005.12.014 Schmitt, 1999, Bacterial toxins: friends or foes?, Emerg. Infect. Dis., 5, 224, 10.3201/eid0502.990206 Kayal, 2006, Listeriolysin O: a key protein of Listeria monocytogenes with multiple functions, FEMS Microbiol. Rev., 30, 514, 10.1111/j.1574-6976.2006.00021.x Saxena, 1989, Shiga toxin, Shiga-like toxin II variant, and ricin are all single-site RNA N-glycosidases of 28S RNA when microinjected into Xenopus oocytes, J. Biol. Chem., 264, 596, 10.1016/S0021-9258(17)31302-9 Endo, 1988, Site of action of a Vero toxin (VT2) from Escherichia coli O157:H7 and of Shiga toxin on eukaryotic ribosomes. RNA N-glycosidase activity of the toxins, Eur. J. Biochem., 171, 45, 10.1111/j.1432-1033.1988.tb13756.x Turk, 2007, Manipulation of host signalling pathways by anthrax toxins, Biochem. J., 402, 405, 10.1042/BJ20061891 Mabry, 2006, Detection of anthrax toxin in the serum of animals infected with Bacillus anthracis by using engineered immunoassays, Clin. Vaccine Immunol., 13, 671, 10.1128/CVI.00023-06 Ezzell, 1992, Serum protease cleavage of Bacillus anthracis protective antigen, J. Gen. Microbiol., 138, 543, 10.1099/00221287-138-3-543 Panchal, 2005, Purified Bacillus anthracis lethal toxin complex formed in vitro and during infection exhibits functional and biological activity, J. Biol. Chem., 280, 10834, 10.1074/jbc.M412210200 Rucker, 2005, Antibody microarrays for native toxin detection, Anal. Biochem., 339, 262, 10.1016/j.ab.2005.01.030 Homola, 2002, Spectral surface plasmon resonance biosensor for detection of staphylococcal enterotoxin B in milk, Int. J. Food Microbiol., 75, 61, 10.1016/S0168-1605(02)00010-7 Medina, 2006, Development of a fluorescent latex microparticle immunoassay for the detection of staphylococcal enterotoxin B (SEB), J. Agric. Food Chem., 54, 4937, 10.1021/jf053253q Kawano, 2000, Rapid isolation and identification of staphylococcal exoproteins by reverse phase capillary high performance liquid chromatography-electrospray ionization mass spectrometry, FEMS Microbiol. Lett., 189, 103 Carol, 2005, Determination of denaturated proteins and biotoxins by on-line size-exclusion chromatography-digestion-liquid chromatography-electrospray mass spectrometry, Anal. Biochem., 346, 150, 10.1016/j.ab.2005.08.023 Nath, 2008, Dextran-coated gold nanoparticles for the assessment of antimicrobial susceptibility, Anal. Chem., 80, 1033, 10.1021/ac701969u Bruchez, 1998, Semiconductor nanocrystals as fluorescent biological labels, Science, 281, 2013, 10.1126/science.281.5385.2013 Edgar, 2006, High-sensitivity bacterial detection using biotin-tagged phage and quantum-dot nanocomplexes, Proc. Natl. Acad. Sci. U. S. A., 103, 4841, 10.1073/pnas.0601211103 Baptista, 2006, Gold-nanoparticle-probe-based assay for rapid and direct detection of Mycobacterium tuberculosis DNA in clinical samples, Clin. Chem., 52, 1433, 10.1373/clinchem.2005.065391 Goldman, 2004, Multiplexed toxin analysis using four colors of quantum dot fluororeagents, Anal. Chem., 76, 684, 10.1021/ac035083r Alivisatos, 2005, Quantum dots as cellular probes, Annu. Rev. Biomed. Eng., 7, 55, 10.1146/annurev.bioeng.7.060804.100432 Daniel, 2004, Gold nanoparticles: assembly, supramolecular chemistry, quantum-size-related properties, and applications toward biology, catalysis, and nanotechnology, Chem. Rev., 104, 293, 10.1021/cr030698+ Sun, 2002, Shape-controlled synthesis of gold and silver nanoparticles, Science, 298, 2176, 10.1126/science.1077229 Schaller, 2004, Toxicity and antimicrobial activity of a hydrocolloid dressing containing silver particles in an ex vivo model of cutaneous infection, Skin Pharmacol. Physiol., 17, 31, 10.1159/000074060 Chen, 2002, Synthesis and characterization of truncated triangular silver nanoplates, Nano. Lett., 2, 1003, 10.1021/nl025674h Akamatsu, 2003, Site-selective direct silver metallization on surface-modified polyimide layers, Langmuir, 19, 10366, 10.1021/la034888r Medintz, 2005, Quantum dot bioconjugates for imaging, labelling and sensing, Nat. Mater., 4, 435, 10.1038/nmat1390 Tully, 2006, The development of rapid fluorescence-based immunoassays, using quantum dot-labelled antibodies for the detection of Listeria monocytogenes cell surface proteins, Int. J. Biol. Macromol., 39, 127, 10.1016/j.ijbiomac.2006.02.023 Michalet, 2005, Quantum dots for live cells, in vivo imaging, and diagnostics, Science, 307, 538, 10.1126/science.1104274 Ness, 2003, Combined tyramide signal amplification and quantum dots for sensitive and photostable immunofluorescence detection, J. Histochem. Cytochem., 51, 981, 10.1177/002215540305100801 Pellegrino, 2003, Quantum dot-based cell motility assay, Differentiation, 71, 542, 10.1111/j.1432-0436.2003.07109006.x Pathak, 2001, Hydroxylated quantum dots as luminescent probes for in situ hybridization, J. Am. Chem. Soc., 123, 4103, 10.1021/ja0058334 Taton, 2000, Scanometric DNA array detection with nanoparticle probes, Science, 289, 1757, 10.1126/science.289.5485.1757 Zhang, 2005, Single-quantum-dot-based DNA nanosensor, Nat. Mater., 4, 826, 10.1038/nmat1508 Zhao, 2004, A rapid bioassay for single bacterial cell quantitation using bioconjugated nanoparticles, Proc. Natl. Acad. Sci. U. S. A., 101, 15027, 10.1073/pnas.0404806101 Qin, 2008, Using fluorescent nanoparticles and SYBR Green I based two-color flow cytometry to determine Mycobacterium tuberculosis avoiding false positives, Biosens. Bioelectron., 24, 626, 10.1016/j.bios.2008.06.023 McCarthy, 2005, Polymeric nanoparticle preparation that eradicates tumors, Nano. Lett., 5, 2552, 10.1021/nl0519229 Santra, 2009, Drug/dye-loaded, multifunctional iron oxide nanoparticles for combined targeted cancer therapy and dual optical/magnetic resonance imaging, Small, 16, 1862, 10.1002/smll.200900389 Nath, 2009, Synthesis, magnetic characterization, and sensing applications of novel dextran-coated iron oxide nanorods, Chem. Mater., 21, 1761, 10.1021/cm8031863 Kaittanis, 2007, One-step, nanoparticle-mediated bacterial detection with magnetic relaxation, Nano. Lett., 7, 380, 10.1021/nl062553z Lee, 2008, Chip-NMR biosensor for detection and molecular analysis of cells, Nat. Med., 14, 869, 10.1038/nm.1711 Perez, 2002, Magnetic relaxation switches capable of sensing molecular interactions, Nat. Biotechnol., 20, 816, 10.1038/nbt720 Perez, 2003, Viral-induced self-assembly of magnetic nanoparticles allows the detection of viral particles in biological media, J. Am. Chem. Soc., 125, 10192, 10.1021/ja036409g Grimm, 2004, Novel nanosensors for rapid analysis of telomerase activity, Cancer Res., 64, 639, 10.1158/0008-5472.CAN-03-2798 Kaittanis, 2008, Rapid nanoparticle-mediated monitoring of bacterial metabolic activity and assessment of antimicrobial susceptibility in blood with magnetic relaxation, PLoS ONE, 3, e3253, 10.1371/journal.pone.0003253 Perez, 2008, Integrated nanosensors to determine levels and functional activity of human telomerase, Neoplasia, 10, 1066, 10.1593/neo.08350 Chemla, 2000, Ultrasensitive magnetic biosensor for homogeneous immunoassay, Proc. Natl. Acad. Sci. U. S. A., 97, 14268, 10.1073/pnas.97.26.14268 Grossman, 2004, Detection of bacteria in suspension by using a superconducting quantum interference device, Proc. Natl. Acad. Sci. U. S. A., 101, 129, 10.1073/pnas.0307128101 Yang, 2008, Ultra-highly sensitive and wash-free bio-detection of H5N1 virus by immunomagnetic reduction assays, J. Virol. Methods, 153, 250, 10.1016/j.jviromet.2008.07.025 Hsu, 2004, RCA combined nanoparticle-based optical detection technique for protein microarray: a novel approach, Biosens. Bioelectron., 20, 123, 10.1016/j.bios.2003.10.015 Lynch, 2004, Functional protein nanoarrays for biomarker profiling, Proteomics, 4, 1695, 10.1002/pmic.200300701 DeMarco, 1999, Rapid detection of Escherichia coli O157:H7 in ground beef using a fiber-optic biosensor, J. Food Prot., 62, 711, 10.4315/0362-028X-62.7.711 Tims, 2004, Rapid detection of Bacillus anthracis spores directly from powders with an evanescent wave fiber-optic biosensor, J. Microbiol. Methods, 59, 127, 10.1016/j.mimet.2004.02.016 Lim, 2005, Current and developing technologies for monitoring agents of bioterrorism and biowarfare, Clin. Microbiol. Rev., 18, 583, 10.1128/CMR.18.4.583-607.2005 Valanne, 2005, A sensitive adenovirus immunoassay as a model for using nanoparticle label technology in virus diagnostics, J. Clin. Virol., 33, 217, 10.1016/j.jcv.2004.11.007 Agrawal, 2005, Real-time detection of virus particles and viral protein expression with two-color nanoparticle probes, J. Virol., 79, 8625, 10.1128/JVI.79.13.8625-8628.2005 Kampani, 2007, A novel high throughput quantum dot-based fluorescence assay for quantitation of virus binding and attachment, J. Virol. Methods, 141, 125, 10.1016/j.jviromet.2006.11.043 Klostranec, 2007, Convergence of quantum dot barcodes with microfluidics and signal processing for multiplexed high-throughput infectious disease diagnostics, Nano. Lett., 7, 2812, 10.1021/nl071415m Phillips, 2008, Rapid and efficient identification of bacteria using gold-nanoparticle-poly(para-phenyleneethynylene) constructs, Angew. Chem. Int. Ed. Engl., 47, 2590, 10.1002/anie.200703369 Weeks, 2003, A microcantilever-based pathogen detector, Scanning, 25, 297, 10.1002/sca.4950250605 Dobozi-King, 2005, Rapid detection and identification of bacteria: sensing of phage-triggered ion cascade (SEPTIC), J. Biol. Phys. Chem., 5, 3, 10.4024/1050501.jbpc.05.01 Bailey, 2003, Real-time multicolor DNA detection with chemoresponsive diffraction gratings and nanoparticle probes, J. Am. Chem. Soc., 125, 13541, 10.1021/ja035479k Storhoff, 2004, Homogeneous detection of unamplified genomic DNA sequences based on colorimetric scatter of gold nanoparticle probes, Nat. Biotechnol., 22, 883, 10.1038/nbt977 Darbha, 2008, Gold-nanorod-based sensing of sequence specific HIV-1 virus DNA by using hyper-Rayleigh scattering spectroscopy, Chemistry, 14, 3896, 10.1002/chem.200701850 Griffin, 2009, Sequence-specific HCV RNA quantification using the size-dependent nonlinear optical properties of gold nanoparticles, Small, 5, 839, 10.1002/smll.200801334 Sanguinetti, 2005, Use of microelectronic array technology for rapid identification of clinically relevant mycobacteria, J. Clin. Microbiol., 43, 6189, 10.1128/JCM.43.12.6189-6193.2005 Wang, 2003, Visual gene diagnosis of HBV and HCV based on nanoparticle probe amplification and silver staining enhancement, J. Med. Virol., 70, 205, 10.1002/jmv.10379 Nam, 2003, Nanoparticle-based bio-bar codes for the ultrasensitive detection of proteins, Science, 301, 1884, 10.1126/science.1088755 Nam, 2004, Bio-bar-code-based DNA detection with PCR-like sensitivity, J. Am. Chem. Soc., 126, 5932, 10.1021/ja049384+ Schofield, 2007, Glyconanoparticles for the colorimetric detection of cholera toxin, Anal. Chem., 79, 1356, 10.1021/ac061462j Chien, 2008, Globotriose-functionalized gold nanoparticles as multivalent probes for Shiga-like toxin, ChemBioChem, 9, 1100, 10.1002/cbic.200700590 Nagy, 2008, Glycopolydiacetylene nanoparticles as a chromatic biosensor to detect Shiga-like toxin producing Escherichia coli O157:H7, Bioorg. Med. Chem. Lett., 18, 700, 10.1016/j.bmcl.2007.11.055 Shim, 2007, Development of immunochromatography strip-test using nanocolloidal gold-antibody probe for the rapid detection of aflatoxin B1 in grain and feed samples, J. Microbiol. Biotechnol., 17, 1629 Radoi, 2008, Enzyme-linked immunosorbent assay (ELISA) based on superparamagnetic nanoparticles for aflatoxin M1 detection, Talanta, 77, 138, 10.1016/j.talanta.2008.05.048 Tang, 2009, Detection of anthrax toxin by an ultrasensitive immunoassay using europium nanoparticles, Clin. Vaccine Immunol., 16, 408, 10.1128/CVI.00412-08 Branen, 2007, Detection of Escherichia coli O157, Salmonella enterica serovar Typhimurium, and staphylococcal enterotoxin B in a single sample using enzymatic bio-nanotransduction, J. Food Prot., 70, 841, 10.4315/0362-028X-70.4.841 Yang, 2009, Single nanoparticle tracking-based detection of membrane receptor-ligand interactions, Anal. Chem., 81, 2564, 10.1021/ac802477h Uzawa, 2008, A novel sugar-probe biosensor for the deadly plant proteinous toxin, ricin, Biosens. Bioelectron., 24, 929, 10.1016/j.bios.2008.07.049 Taylor, 2007, Microfluidic fabrication of addressable tethered lipid bilayer arrays and optimization using SPR with silane-derivatized nanoglassy substrates, Lab Chip, 7, 927, 10.1039/b618940g Tang, 2007, Nanoparticle-based biobarcode amplification assay (BCA) for sensitive and early detection of human immunodeficiency type 1 capsid (p24) antigen, J. Acquir. Immune Defic. Syndr., 46, 231, 10.1097/QAI.0b013e31814a554b Georganopoulou, 2005, Nanoparticle-based detection in cerebral spinal fluid of a soluble pathogenic biomarker for Alzheimer's disease, Proc. Natl. Acad. Sci. U. S. A., 102, 2273, 10.1073/pnas.0409336102 You, 2007, Detection and identification of proteins using nanoparticle-fluorescent polymer ‘chemical nose’ sensors, Nat. Nanotechnol., 2, 318, 10.1038/nnano.2007.99 Biagini, 2006, Rapid, sensitive, and specific lateral-flow immunochromatographic device to measure anti-anthrax protective antigen immunoglobulin g in serum and whole blood, Clin. Vaccine Immunol., 13, 541, 10.1128/CVI.13.5.541-546.2006 Laderman, 2008, Rapid, sensitive, and specific lateral-flow immunochromatographic point-of-care device for detection of herpes simplex virus type 2-specific immunoglobulin G antibodies in serum and whole blood, Clin. Vaccine Immunol., 15, 159, 10.1128/CVI.00218-07 Fornara, 2008, Tailored magnetic nanoparticles for direct and sensitive detection of biomolecules in biological samples, Nano. Lett., 8, 3423, 10.1021/nl8022498 Koh, 2008, Sensitive NMR sensors detect antibodies to influenza, Angew. Chem. Int. Ed. Engl., 47, 4119, 10.1002/anie.200800069 Murray, 2007 Andrews, 2001, Determination of minimum inhibitory concentrations, J. Antimicrob. Chemother., 48, 5, 10.1093/jac/48.suppl_1.5 Bancroft, 2007, Antimicrobial resistance: it's not just for hospitals, Jama, 298, 1803, 10.1001/jama.298.15.1803 Klevens, 2007, Invasive methicillin-resistant Staphylococcus aureus infections in the United States, Jama, 298, 1763, 10.1001/jama.298.15.1763 Liu, 2008, A cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence, Science, 319, 1391, 10.1126/science.1153018 Ndieyira, 2008, Nanomechanical detection of antibiotic-mucopeptide binding in a model for superbug drug resistance, Nat. Nanotechnol., 3, 691, 10.1038/nnano.2008.275 Perfeito, 2007, Adaptive mutations in bacteria: high rate and small effects, Science, 317, 813, 10.1126/science.1142284 Chait, 2007, Antibiotic interactions that select against resistance, Nature, 446, 668, 10.1038/nature05685 Mann, 2008, Antibiotic susceptibility testing at a screen-printed carbon electrode array, Anal. Chem., 80, 843, 10.1021/ac701829c Sun, 2006, Continuous analyte sensing with magnetic nanoswitches, Small, 2, 1144, 10.1002/smll.200600204 Aslan, 2004, Nanogold-plasmon-resonance-based glucose sensing, Anal. Biochem., 330, 145, 10.1016/j.ab.2004.03.032