Elucidating the degradation pattern of a new cold-tolerant pectate lyase used for efficient preparation of pectin oligosaccharides
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Bekli S, Aktas B, Gencer D, Aslim B (2019) Biochemical and molecular characterizations of a novel pH- and temperature-stable pectate lyase from Bacillus amyloliquefaciens S6 for industrial application. Mol Biotechnol 61(9):1–13
Bhatia RK, Ullah S, Zahirhoque M, Ahmad I, Yang YH, Bhatt AK, Bhatia SK (2020) Psychrophiles: a source of cold-adapted enzymes for energy efficient biotechnological industrial processes. J Environ Chem Eng. https://doi.org/10.1016/j.jece.2020.104607
Carrasco M, Rozas JM, Alcaíno J, Cifuentes V, Baeza M (2019) Pectinase secreted by psychrotolerant fungi: identification, molecular characterization and heterologous expression of a cold-active polygalacturonase from Tetracladium sp. Microb Cell Factories 18(1):45
Chen J, Liang RH, Liu W, Li T, Liu CM, Wu SS, Wang ZJ (2013) Pectic-oligosaccharides prepared by dynamic high-pressure microfluidization and their in vitro fermentation properties. Carbohyd Polym 91(1):175–182
Gómez B, Yáñez R, Parajó J, Alonso JL (2014) Production of pectin-derived oligosaccharides from lemon peels by extraction, enzymatic hydrolysis and membrane filtration. J Chem Technol Biot 91(1):234–247
Gummadi SN, Panda T (2003) Purification and biochemical properties of microbial pectinases—a review. Process Biochem 38(7):987–996
Henrissat B, Heffron SE, Yoder MD, Lietzke SE, Jurnak F (1995) Functional implications of structure-based sequence alignment of proteins in the extra-cellular pectate lyase superfamily. Plant Physiol 107(3):963–976
Hu F, Zhu B, Li Q, Yin H, Ming DM (2019) Elucidation of a unique pattern and the role of carbohydrate binding module of an alginate lyase. Mar Drugs 18(1):32
Jayani RS, Saxena S, Gupta R (2005) Microbial pectinolytic enzymes: a review. Process Biochem 40(9):2931–2944
Kamijo J, Sakai K, Suzuki H, Suzuki K, Kunitake E, Shimizu M, Kato M (2019) Identification and characterization of a thermostable pectate lyase from Aspergillus luchuensis var. saitoi. Food Chem 276:503–510
Kang HJ, Jo C, Kwon JH, Son JH, An BJ, Byun MW (2006) Antioxidant and cancer cell proliferation inhibition effect of citrus pectin-oligosaccharide prepared by irradiation. J Med Food 9(3):313–320
Kashyap DR, Vohra PK, Chopra S, Tewari R (2001) Applications of pectinases in the commercial sector: a review. Bioresour Technol 77(3):215–227
Klug-Santner BG, Schnitzhofer W, Vršanská M, Weber JR, Agrawal PB, Nierstrasz VA, Guebitz GM (2006) Purification and characterization of a new bioscouring pectate lyase from Bacillus pumilus BK2. J Biotechnol 121(3):390–401
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227(5259):680–685
Li YP, Li WH, Zhang GL, Lü XQ, Hwang H, Aker WG, Guan H, Wang P (2016) Purification and characterization of polysaccharides degradases produced by Alteromonas sp. A321. Int J Biol Macromol 86:96–104
Li Q, Hu F, Wang YM, Zhu BW, Ni F, Yao Z (2020) Elucidation of degradation pattern and immobilization of a novel alginate lyase for preparation of alginate oligosaccharides. Int J Biol Macromol 146:579–587
Lietzke SE, Scavetta RD, Yoder MD, Jurnak F (1996) The refined three-dimensional structure of pectate lyase E from Erwinia chrysanthemi at 2.2 Å resolution. Plant Physiol 111(1):73–92
Liu MQ, Huo WK, Dai X, Dang YH (2018) Preparation of low-molecular-weight citrus pectin by recombinant Bacillus subtilis pectate lyase and promotion of growth of Bifidobacterium longum. Catal Commun 107:39–42
Margesin R, Schinner F (1991) Characterization of a metalloprotease from psychrophilic Xanthomonas maltophilia. FEMS Microbiol Lett 79(2–3):257–261
Miller LG (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Biochem 31(3):426–428
Ogawa A, Sawada K, Saito K, Hakamada Y, Sumitomo N, Hatada Y, Kobayashi T, Ito S (2000) A new high-alkaline and high-molecular-weight pectate lyase from a Bacillus isolate: enzymatic properties and cloning of the gene for the enzyme. Biosci Biotech Bioch 64(6):1133–1141
Olano-Martin E, Gibson GR, Rastall RA (2002) Comparison of the in vitro bifidogenic properties of pectins and pectic oligosaccharides. J Appl Microbiol 93(3):505–511
Ramya LN, Pulicherla KK (2015) Molecular insights into cold active polygalacturonase enzyme for its potential application in food processing. J Food Sci Technol 52(9):5484–5496
Saharan R, Sharma KP (2019) Production, purification and characterization of pectin lyase from Bacillus subtilis isolated from moong beans leaves (Vigna radiata). Biocatal Agric Biotechnol 21:101306–101306
Tang YM, Wu P, Jiang SJ, Selvaraj JN, Yang SH, Zhang GM (2019) A new cold-active and alkaline pectate lyase from Antarctic bacterium with high catalytic efficiency. Appl Microbiol Biotechnol 103(13):5231–5241
Wang H, Li X, Ma Y, Song J (2014) Characterization and high-level expression of a metagenome-derived alkaline pectate lyase in recombinant Escherichia coli. Process Biochem 49(1):69–76
Wang X, Lu Z, Xu T, Selvaraj JN, Yi L, Zhang G (2018) Improving the specific activity and thermo-stability of alkaline pectate lyase from Bacillus subtilis 168 for bioscouring. Biochem Eng J 129:74–83
Wang Z, Xu B, Luo H, Meng K, Tu T (2019) Production pectin oligosaccharides using Humicola insolens Y1-derived unusual pectate lyase. J Biosci Bioeng 129(1):16–22
Weikert T, Niehues A, Cord-Landwehr S, Hellmann MJ, Moerschbacher BM (2017) Reassessment of chitosanase substrate specificities and classification. Nat Commun 8(1):1698
Wu P, Yang S, Zhan Z, Zhang G (2020) Origins and features of pectate lyases and their applications in industry. Appl Microbiol Biotechnol 104(48):7247–7260
Yadav S, Yadav PK, YadavD YKDS (2008) Purification and characterization of an alkaline pectin lyase from Aspergillus flavus. Process Biochem 43(5):547–552
Yang G, Chen W, Tan H, Li K, Li J, Yin H (2020) Biochemical characterization and evolutionary analysis of a novel pectate lyase from Aspergillus parasiticus. Int J Biol Macromol 152:180–188
Yoder MD, Keen NT, Jurnak F (1993) New domain motif: the structure of pectate lyase C, a secreted plant virulence factor. Science 260(5113):1503
Yuan P, Meng K, Wang Y, Luo H, Shi P, Huang H, Yao B (2012) A low-temperature-active alkaline pectate lyase from Xanthomonas campestris ACCC 10048 with high activity over a wide pH range. Appl BiochemBiotechnol 168(6):1489–1500
Yuan Y, Zhang XY, Zhao Y, Zhang H, Zhou YF, Gao J (2019) A novel PL9 pectate lyase from Paenibacillus polymyxa KF-1: cloning, expression, and its application in pectin degradation. Int J Mol Sci 20:3060
Zhan PW, Ye JN, Lin XP, Zhang F, Lin D, Zhang Y, Tang K (2020) Complete genome sequence of Echinicola rosea JL3085, a xylan and pectin decomposer. Mar Genomics. https://doi.org/10.1016/j.margen.2019.100722
Zhang S, Hu H, Wang L, Liu F, Pan S (2018) Preparation and prebiotic potential of pectin oligosaccharides obtained from citrus peel pectin. Food Chem 244:232–237
Zhao Y, Yuan Y, Zhang XY, Li YM, Li Q, Zhou YF, Gao J (2018) Screening of a novel polysaccharide lyase family 10 pectate lyase from Paenibacillus polymyxa KF-1: cloning, expression and characterization. Molecules 23(11):2774
Zheng L, Xu Y, Li Q, Zhu B (2021) Pectinolytic lyases: a comprehensive review of sources, category, property, structure, and catalytic mechanism of pectate lyases and pectin lyases. Bioresour Bioprocess 8(1):79
Zhou C, Xue Y, Ma Y (2017) Characterization and overproduction of a thermo-alkaline pectate lyase from alkaliphilic Bacillus licheniformis with potential in ramie degumming. Process Biochem 54:49–58
Zhu B, Ni F, Sun Y, Ning L, Yao Z (2019) Elucidation of degrading pattern and substrate recognition of a novel bifunctional alginate lyase from Flammeovirga sp. NJ-04 and its use for preparation alginate oligosaccharides. Biotechnol Biofuels. https://doi.org/10.1186/s13068-019-1352-8