Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants

Perspectives in Plant Ecology, Evolution and Systematics - Tập 3 Số 2 - Trang 93-114 - 2000
Hilde Nybom1, Igor V. Bartish1
1Balsgård-Department of Horticultural Plant Breeding, Swedish University of Agricultural Sciences, Fjälkestadsvägen 123-1, 291 94 Kristianstad, Sweden

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Aagaard, 1998, RAPDs and allozymes exhibit similar levels of diversity and differentiation among populations and races of Douglas-fir, Heredity, 81, 69, 10.1046/j.1365-2540.1998.00355.x

Adams, 1998, Invasion of grasslands by Juniperus ashei: a new theory based on random amplified polymorphic DNAs (RAPDs), Biochemical Systematics and Ecology, 26, 371, 10.1016/S0305-1978(97)00132-4

Aide, 1998, Geographic patterns of genetic diversity in Poulsenia armata (Moraceae): implications for the theory of the pleistocene refugia and the importance of riparian forest, Journal of Biogeography, 25, 695, 10.1046/j.1365-2699.1998.2540695.x

Ayres, 1997, The clonal and populational structure of a rare endemic plant, Wyethia reticulata (Asteraceae): allozyme and RAPD analysis, Molecular Ecology, 6, 761, 10.1046/j.1365-294X.1997.00248.x

Ayres, 1999, Genetic diversity and structure of the narrow endemic Wyethia reticulata and its congener W. bolanderi (Asteraceae) using RAPD and allozyme techniques, American Journal of Botany, 86, 344, 10.2307/2656756

Bartish, 1999, Population genetic structure in the dioecious pioneer plant species Hippophae rhamnoides investigated by random amplified polymorphic DNA (RAPD) markers, Molecular Ecology, 8, 791, 10.1046/j.1365-294X.1999.00631.x

Bartish, 1999, Genetic diversity in the rosaceous genus Chaenomeles revealed by RAPD analysis, Plant Systematics and Evolution, 214, 131, 10.1007/BF00985735

Bartish, 2000, Phylogenetic relationships and differentiation among and within populations of Chaenomeles Lindl. (Rosaceae), estimated with RAPDs and isozymes, Theoretical and Applied Genetics, 101, 554, 10.1007/s001220051515

Bartish, I.V., Jeppsson, N., Bartish, G.I., Lu, R. & Nybom, H. (in press) Inter- and intraspecific variation in Hippophae (Elaeagnaceae) investigated by RAPD markers. Plant Systematics and Evolution.

Brunell, 1997, RAPD marker variation in Eriastrum densifolium (Polemoniaceae): implications for subspecific delimitation and conservation, Systematic Botany, 22, 543, 10.2307/2419827

Bushakra, 1999, The extent of clonality and genetic diversity in the Santa Cruz Island ironwood, Lyonothamnus floribundus. Molecular Ecology, 8, 471, 10.1046/j.1365-294X.1999.00591.x

Buso, 1998, Analysis of genetic variability in South American wild rice populations (Oryza glumaepatula) with isozymes and RAPD markers, Molecular Ecology, 7, 107, 10.1046/j.1365-294x.1998.00321.x

Bussell, 1999, The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotoma petraea (Lobeliaceae), Molecular Ecology, 8, 775, 10.1046/j.1365-294X.1999.00627.x

Degen, 1999, Comparative study of genetic variation and differentiation of two pedunculate oak (Quercus robur) stands using microsatellite and allozyme loci, Heredity, 83, 597, 10.1038/sj.hdy.6886220

Diaz, 1999, Levels and distribution of allozyme and RAPD variation in populations of Elymus fibrosus (Schrenk) Tzvel. (Poaceae), Genetic Resources and Crop Evolution, 47, 11, 10.1023/A:1008719119756

Ellstrand, 1993, Population genetic consequences of small population size: implications for plant conservation, Annual Reviews in Ecology and Systematics, 24, 217, 10.1146/annurev.es.24.110193.001245

Ellstrand, 1987, Patterns of genotypic diversity in clonal plant species, American Journal of Botany, 74, 123, 10.2307/2444338

Excoffier, 1992, Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data, Genetics, 131, 179, 10.1093/genetics/131.2.479

Fahima, 1999, RAPD polymorphism of wild emmer wheat populations, Triticum dicoccoides, in Israel, Theoretical and Applied Genetics, 98, 434, 10.1007/s001220051089

Ferguson, 1998, Population genetic structure in Lens taxa revealed by isozyme and RAPD analysis, Genetic Resources and Crop Evolution, 45, 549, 10.1023/A:1008640201896

Friar, 1996, Molecular genetic variation following a population crash in the endangered Mauna Kea silversword, Argyroxiphium sandwicense ssp. sandwicense (Asteraceae), Molecular Ecology, 5, 687, 10.1111/j.1365-294X.1996.tb00363.x

Gabrielsen, 1997, Glacial survival does not matter: RAPD phylogeography of Nordic Saxifraga oppositifolia, Molecular Ecology, 6, 831, 10.1111/j.1365-294X.1997.tb00137.x

Gillies, 1997, Genetic variation in Costa Rican populations of the tropical timber species Cedrela odorata L., assessed using RAPDs, Molecular Ecology, 6, 1133, 10.1046/j.1365-294X.1997.00287.x

Gitzendanner, 2000, Patterns of genetic variation in rare and widespread plant congeners, American Journal of Botany, 87, 783, 10.2307/2656886

Halldén, 1996, Competition as a source of errors in RAPD analysis, Theoretical and Applied Genetics, 93, 1185, 10.1007/BF00223449

Hamrick, 1989, Allozyme diversity in plant species. Plant Population Genetics, Breeding and Genetic Resources, 43

Hamrick, 1996, Effects of life history traits on genetic diversity in plant species, Philosophical Transactions of the Royal Society in London, Series B, 351, 1291, 10.1098/rstb.1996.0112

Heaton, 1999, Extreme ecological and phenotypic differences in the tropical tree chicozapote (Manilkara zapota (L. R. Royen) are not matched by the genetic divergence: a random amplified polymorphic DNA (RAPD) analysis, Molecular Ecology, 8, 627, 10.1046/j.1365-294x.1999.00616.x

Huff, 1993, RAPD variation within and among natural populations of outcrossing buffalograss (Buchloe dactyloides (Nutt. Engelm.), Theoretical and Applied Genetics, 86, 927, 10.1007/BF00211043

Isabel, 1995, Complete congruence between gene diversity estimates derived from genotypic data at enzyme and random amplified polymorphic DNA loci in black spruce, Proceedings of the National Academy of Science, USA, 92, 6369, 10.1073/pnas.92.14.6369

Isabel, 1999, Direct evidence for biased gene diversity estimates from dominant random amplified polymorphic DNA (RAPD) fingerprints, Molecular Ecology, 8, 477, 10.1046/j.1365-294X.1999.00597.x

Jenczewski, 1997, Insight on segregation distortions in two intraspecific crosses between annual species of Medicago (Leguminosae), Theoretical and Applied Genetics, 94, 682, 10.1007/s001220050466

Jenczewski, 1999, Differentiation between natural and cultivated populations of Medicago sativa (Leguminosae) from Spain: analysis with random amplified polymorphic DNA (RAPD) markers and comparison to allozymes, Molecular Ecology, 8, 1317, 10.1046/j.1365-294X.1999.00697.x

Jordano, 2000, RAPD variation and population genetic structure in Prunus mahaleb (Rosaceae), an animal-dispersed tree, Molecular Ecology, 9, 1293, 10.1046/j.1365-294x.2000.01009.x

Krauss, 2000, Accurate gene diversity estimates from amplified fragment length polymorphism (AFLP) markers, Molecular Ecology, 9, 1241, 10.1046/j.1365-294x.2000.01001.x

Lannér-Herrera, 1996, Diversity in natural populations of wild Brassica oleracea as estimated by isozyme and RAPD analysis, Genetic Resources and Crop Evolution, 43, 13, 10.1007/BF00126936

Le Corre, 1997, Genetic variation at allozyme and RAPD loci in sessile oak Quercus petraea (Matt. Liebl.: the role of history and geography, Molecular Ecology, 6, 519, 10.1046/j.1365-294X.1997.00214.x

Li, 1999, Microclimatic stress and adaptive DNA differentiation in wild emmer wheat, Triticum dicoccoides, Theoretical and Applied Genetics, 98, 873, 10.1007/s001220051146

Liu, 1993, Comparison of allozyme, RFLP, and RAPD markers for revealing genetic variation within and between trembling aspen and bigtooth aspen, Theoretical and Applied Genetics, 87, 97, 10.1007/BF00223752

Lönn, 1998, Fitness-related traits of allozyme genotypes in Bromus hordeaceus L. (Poaceae) associated with field habitat and experimental flooding, Biological Journal of the Linnean Society, 64, 207

Lynch, 1994, Analysis of population genetic structure with RAPD markers, Molecular Ecology, 2, 91, 10.1111/j.1365-294X.1994.tb00109.x

Martín, 1999, The use of genetic markers in the identification and characterization of three recently discovered populations of a threatened plant species, Molecular Ecology, 8, S31, 10.1046/j.1365-294X.1999.00750.x

Morden, 1999, Fragmentation and genetic differentiation among subpopulations of the endangered Hawaiian mint Haplostachys haplostachya (Lamiaceae), Molecular Ecology, 8, 617, 10.1046/j.1365-294x.1999.00601.x

Nebauer, 1999, RAPD variation within and among natural populations of outcrossing willow-leaved foxglove (Digitalis obscura L.), Theoretical and Applied Genetics, 98, 985, 10.1007/s001220051159

Nei, 1973, Analysis of genetic diversity in subdivided populations, Proceedings of the National Academy of Sciences, USA, 70, 3321, 10.1073/pnas.70.12.3321

Nei, 1978, Estimation of average heterozygosity and genetic distance from a small number of individuals, Genetics, 89, 583, 10.1093/genetics/89.3.583

Nei, 1986, Definition and estimation of fixation indices, Evolution, 40, 643, 10.2307/2408586

Nevo, 1998, Ecological correlates of RAPD DNA diversity of wild barley, Hordeum spontaneum, in the Fertile Crescent, Genetic Resources and Crop Evolution, 45, 151, 10.1023/A:1008616923427

Owuor, 1997, Population genetic response to microsite ecological stress in barley, Hordeum spontaneum, Molecular Ecology, 6, 1177, 10.1046/j.1365-294X.1997.00296.x

Palacios, 1997, Lack of genetic variability in the rare and endangered Limonium cavanillesii (Plumbaginaceae) using RAPD markers, Molecular Ecology, 6, 671, 10.1046/j.1365-294X.1997.00232.x

Palacios, 1997, Analysis of population genetic structure and variability using RAPD markers in the endemic and endangered Limonium dufourii (Plumbaginaceae), Molecular Ecology, 6, 1107, 10.1046/j.1365-294X.1997.00283.x

Pejic, 1998, Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs, Theoretical and Applied Genetics, 97, 1248, 10.1007/s001220051017

Persson, 1998, RAPD analysis of genetic variation within and among populations of Turk's-cap lily (Lilium martagon L.), Hereditas, 128, 213, 10.1111/j.1601-5223.1998.00213.x

Purps, 1998, RAPD evidence for a sister group relationship of the presumed progenitorderivative species pair Senecio nebrodensis and S. viscosus (Asteraceae), Plant Systematics and Evolution, 211, 57, 10.1007/BF00984912

Rabouam, 1999, Features of DNA fragments obtained by random amplified polymorphic DNA (RAPD) assays, Molecular Ecology, 8, 493, 10.1046/j.1365-294X.1999.00605.x

Rieseberg, 1996, Homology among RAPD fragments in interspecific comparisons, Molecular Ecology, 5, 99, 10.1111/j.1365-294X.1996.tb00295.x

Slatkin, 1993, Isolation by distance in equilibrium and non-equilibrium populations, Evolution, 47, 264, 10.2307/2410134

Smith, 1996, Genetic diversity of the narrow endemic Allium aaseae (Alliaceae), American Journal of Botany, 83, 717, 10.2307/2445848

Spooner, 1997, Species boundaries and interrelationships of two closely related sympatric diploid wild potato species, Solanum astleyi and S. boliviense, based on RAPDs, Theoretical and Applied Genetics, 95, 764, 10.1007/s001220050623

Stevens, 1999, Genetic variation in postfire aspen seedlings in Yellowstone National Park, Molecular Ecology, 18, 1769, 10.1046/j.1365-294x.1999.00732.x

Stewart, 1996, Assessing population genetic structure and variability with RAPD data: application to Vaccinium macrocarpon (American cranberry), Journal of Evolutionary Biology, 9, 143, 10.1046/j.1420-9101.1996.9020153.x

Swensen, 1995, Genetic analysis of the endangered island endemic Malacothamnus fasciculatus (Nutt.) Greene var. nesioticus (Rob.) Kearn. (Malvaceae), Conservation Biology, 9, 404, 10.1046/j.1523-1739.1995.9020404.x

Szmidt, 1996, Empirical assessment of allozyme and RAPD variation in Pinus sylvestris (L.) using haploid tissue analysis, Heredity, 76, 412, 10.1038/hdy.1996.59

Tollefsrud, 1998, Glacial survival does not matter — II: RAPD phylogeography of Nordic Saxifraga cespitosa, Molecular Ecology, 7, 1219, 10.1046/j.1365-294x.1998.00452.x

Virk, 2000, Effectiveness of different classes of molecular marker for classifying and revealing variation in rice (Oryza sativa) germplasm, Euphytica, 12, 275, 10.1023/A:1003952720758

Weir, 1984, Estimating F-statistics for the analysis of population structure, Evolution, 8, 1358, 10.2307/2408641

Weising, 1995

Wen, 1999, Genetic differentiation of Lilium longiflorum Thunb. var. scabrum Masam. (Liliaceae) in Taiwan using random amplified polymorphic DNA and morphological characters, Botanical Bulletin of Academia Sinica, 40, 65

Williams, 1990, DNA polymorphisms amplified by arbitrary primers are useful as genetic markers, Nucleic Acids Research, 18, 6531, 10.1093/nar/18.22.6531

Wong, 1999, Reproductive biology and conservation genetics of Goodyera procera (Orchidaceae), American Journal of Botany, 86, 1406, 10.2307/2656923

Wu, 2000, Nuclear DNA diversity, population differentiation, and phylogenetic relationships in the California closed-cone pines based on RAPD and allozyme markers, Genome, 42, 93