Effects of heavy metals and antibiotics on antibiotic resistance genes and microbial communities in soil

Aydin, 2015, Development of antibiotic resistance genes in microbial communities during long-term operation of anaerobic reactors in the treatment of pharmaceutical wastewater, Water Res., 83, 337, 10.1016/j.watres.2015.07.007 Bao, 2020, Effects of macroporous adsorption resin on antibiotic resistance genes and the bacterial community during composting, Bioresour. Technol., 295, 10.1016/j.biortech.2019.121997 Chen, 2015, The role of class I integrons in the dissemination of sulfonamide resistance genes in the Pearl River and Pearl River Estuary, South China, J. Hazard. Mater., 282, 61, 10.1016/j.jhazmat.2014.06.010 Cheng, 2018, Problematic effects of antibiotics on anaerobic treatment of swine wastewater, Bioresour. Technol., 263, 642, 10.1016/j.biortech.2018.05.010 Das, 2016, Genetic basis and importance of metal resistant genes in bacteria for bioremediation of contaminated environments with toxic metal pollutants, Appl. Microbiol. Biot., 100, 2967, 10.1007/s00253-016-7364-4 Dong, 2021, Co/La modified Ti/PbO2 anodes for chloramphenicol degradation: catalytic performance and reaction mechanism, Chemosphere, 285, 10.1016/j.chemosphere.2021.131568 Fenical, 2006, Developing a new resource for drug discovery: marine actinomycete bacteria, Nat. Chem. Biol., 2, 666, 10.1038/nchembio841 Fu, 2022, Mechanisms of the effects of humic acid on antibiotic resistance genes and microbial communities in Cd-contaminated soils, Process Saf. Environ., 160, 62, 10.1016/j.psep.2022.02.006 Gao, 2012, Occurrence of sulfonamide and tetracycline-resistant bacteria and resistance genes in aquaculture environment, Water Res., 46, 2355, 10.1016/j.watres.2012.02.004 Gao, 2015, Impacts of coexisting antibiotics, antibacterial residues, and heavy metals on the occurrence of erythromycin resistance genes in urban wastewater, Appl. Microbiol. Biot., 99, 3971, 10.1007/s00253-015-6404-9 Gaze, 2011, Impacts of anthropogenic activity on the ecology of class 1 integrons and integron-associated genes in the environment, ISME J., 5, 1253, 10.1038/ismej.2011.15 Guo, 2018, Role of bentonite on the mobility of antibiotic resistance genes, and microbial community in oxytetracycline and cadmium contaminated soil, Front. Microbiol., 9, 2722, 10.3389/fmicb.2018.02722 Guo, 2019, Responses of antibiotic and heavy metal resistance genes to bamboo charcoal and bamboo vinegar during aerobic composting, Environ. Pollut., 252, 1097, 10.1016/j.envpol.2019.05.014 Guo, 2021, Impacts of cadmium addition on the alteration of microbial community and transport of antibiotic resistance genes in oxytetracycline contaminated soil, J. Environ. Sci. -China, 99, 51, 10.1016/j.jes.2020.04.015 Heuer, 2011, Accumulation of sulfonamide resistance genes in arable soils due to repeated application of manure containing sulfadiazine, Appl. Environ. Micro, 77, 2527, 10.1128/AEM.02577-10 Huerta, 2013, Exploring the links between antibiotic occurrence, antibiotic resistance, and bacterial communities in water supply reservoirs, Sci. Total Environ., 456, 161, 10.1016/j.scitotenv.2013.03.071 Huygens, 2022, Impact of fertilization with pig or calf slurry on antibiotic residues and resistance genes in the soil, Sci. Total Environ., 822, 10.1016/j.scitotenv.2022.153518 Jechalke, 2013, Increased abundance and transferability of resistance genes after field application of manure from sulfadiazine-treated pigs, Appl. Environ. Micro, 79, 1704, 10.1128/AEM.03172-12 Ji, 2012, Antibiotic resistance gene abundances associated with antibiotics and heavy metals in animal manures and agricultural soils adjacent to feedlots in Shanghai; China, J. Hazard. Mater., 235, 178, 10.1016/j.jhazmat.2012.07.040 Kalashnikov, 2017, Rapid phenotypic stress-based microfluidic antibiotic susceptibility testing of Gram-negative clinical isolates, Sci. Rep. -Uk, 7, 8031, 10.1038/s41598-017-07584-z Kay, 2005, Column studies to investigate the fate of veterinary antibiotics in clay soils following slurry application to agricultural land, Chemosphere, 60, 497, 10.1016/j.chemosphere.2005.01.028 Li, 2009, Antibiotic-resistance profile in environmental bacteria isolated from penicillin production wastewater treatment plant and the receiving river, Environ. Microbiol, 11, 1506, 10.1111/j.1462-2920.2009.01878.x Li, 2019, Sub-lethal concentrations of heavy metals induce antibiotic resistance via mutagenesis, J. Hazard. Mater., 369, 9, 10.1016/j.jhazmat.2019.02.006 Liu, 2020, Comparisons of pollution characteristics, emission situations, and mass loads for heavy metals in the manures of different livestock and poultry in China, Sci. Total Environ., 734, 10.1016/j.scitotenv.2020.139023 Ma, 2018, Long-term low dissolved oxygen accelerates the removal of antibiotics and antibiotic resistance genes in swine wastewater treatment, Chem. Eng. J., 334, 630, 10.1016/j.cej.2017.10.051 Mazhar, 2021, Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments, Sci. Total Environ. 755., 10.1016/j.scitotenv.2020.142702 McKinney, 2010, Antibiotic resistance genes in livestock lagoons of various operation type, configuration, and antibiotic occurrence, Environ. Sci. Technol., 44, 6102, 10.1021/es9038165 Peng, 2015, Long-term application of fresh and composted manure increase tetracycline resistance in the arable soil of eastern China, Sci. Total Environ., 506–507, 279, 10.1016/j.scitotenv.2014.11.010 Pruden, 2013, Management options for reducing the release of antibiotics and antibiotic resistance genes to the environment, Environ. Health Perspect., 121, 878, 10.1289/ehp.1206446 Qiu, 2019, Microbial community responses to biochar addition when a green waste and manure mix are composted: a molecular ecological network analysis, Bioresour. Technol., 273, 666, 10.1016/j.biortech.2018.12.001 Rodriguez-Mozaz, 2015, Occurrence of antibiotics and antibiotic resistance genes in hospital and urban wastewaters and their impact on the receiving river, Water Res., 69, 234, 10.1016/j.watres.2014.11.021 Roosa, 2014, Bacterial metal resistance genes and metal bioavailability in contaminated sediments, Environ. Pollut., 189, 143, 10.1016/j.envpol.2014.02.031 Santas-Miguel, 2022, Tolerance of soil bacterial community to tetracycline antibiotics induced by As, Cd, Zn, Cu, Ni, Cr, and Pb pollution, Soil, 8, 437, 10.5194/soil-8-437-2022 Sardar, 2021, The fate of antibiotic resistance genes in cow manure composting: shaped by temperature-controlled composting stages, Bioresour. Technol., 320, 10.1016/j.biortech.2020.124403 Seiler, 2012, Heavy metal driven co-selection of antibiotic resistance in soil and water bodies impacted by agriculture and aquaculture, Front. Microbiol., 3, 399, 10.3389/fmicb.2012.00399 Selvam, 2012, Fate of tetracycline, sulfonamide and fluoroquinolone resistance genes and the changes in bacterial diversity during composting of swine manure, Bioresour. Technol., 126, 383, 10.1016/j.biortech.2012.03.045 Stoob, 2006, Exhaustive extraction of sulfonamide antibiotics from aged agricultural soils using pressurized liquid extraction, J. Chromatogr. A, 1128, 1, 10.1016/j.chroma.2006.06.048 Storteboom, 2010, Identification of antibiotic-resistance-gene molecular signatures suitable as tracers of pristine river, urban, and agricultural sources, Environ. Sci. Technol., 44, 1947, 10.1021/es902893f Suzuki, 2017, Expression profiling of antibiotic-resistant bacteria obtained by laboratory evolution, Methods Mol. Biol., 1520, 263, 10.1007/978-1-4939-6634-9_16 Tolls, 2001, Sorption of veterinary pharmaceuticals in soils: a review, Environ. Sci. Technol., 35, 3397, 10.1021/es0003021 Trotter, 2019, Recent and emerging technologies for the rapid diagnosis of infection and antimicrobial resistance, Curr. Opin. Microbiol., 51, 39, 10.1016/j.mib.2019.03.001 Tuo, 2018, Prevalence of quinolone resistance genes, copper resistance genes, and the bacterial communities in a soil-ryegrass system co-polluted with copper and ciprofloxacin, Chemosphere, 197, 643, 10.1016/j.chemosphere.2018.01.033 Wang, 2016, Dissemination of veterinary antibiotics and corresponding resistance genes from a concentrated swine feedlot along the waste treatment paths, Environ. Int., 92–93, 317, 10.1016/j.envint.2016.04.020 Wang, 2020, Soil types influence the characteristic of antibiotic resistance genes in greenhouse soil with long-term manure application, J. Hazard. Mater., 392, 10.1016/j.jhazmat.2020.122334 Wei, 2017, 35 years of manure and chemical fertilizer application alters soil microbial community composition in a Fluvo-aquic soil in Northern China, Eur. J. Soil Biol., 82, 27, 10.1016/j.ejsobi.2017.08.002 Wu, 2015, Relationships between antibiotics and antibiotic resistance gene levels in municipal solid waste leachates in Shanghai, China, Environ. Sci. Technol., 49, 4122, 10.1021/es506081z Zarei-Baygi, 2019, Evaluating antibiotic resistance gene correlations with antibiotic exposure conditions in anaerobic membrane bioreactors, Environ. Sci. Technol., 53, 3599, 10.1021/acs.est.9b00798 Zhang, 2018, Soil types influence the fate of antibiotic-resistant bacteria and antibiotic resistance genes following the land application of sludge composts, Environ. Int., 118, 34, 10.1016/j.envint.2018.05.029 Zhang, 2014, Changes in physical, chemical, and microbiological properties during the two-stage co-composting of green waste with spent mushroom compost and biochar, Bioresour. Technol., 171, 274, 10.1016/j.biortech.2014.08.079 Zhang, 2015, Comprehensive evaluation of antibiotics emission and fate in the River Basins of China: source analysis, multimedia modeling, and linkage to bacterial resistance, Environ. Sci. Technol., 49, 6772, 10.1021/acs.est.5b00729 Zhang, 2009, Class 1 integronase gene and tetracycline resistance genes tetA and tetC in different water environments of Jiangsu Province, China, Ecotoxicology, 18, 652, 10.1007/s10646-009-0332-3 Zhang, 2019, Transfer of antibiotic resistance from manure-amended soils to vegetable microbiomes, Environ. Int., 130, 10.1016/j.envint.2019.104912 Zhu, 2017, Does organically produced lettuce harbor higher abundance of antibiotic resistance genes than conventionally produced, Environ. Int., 98, 152, 10.1016/j.envint.2016.11.001