Effect of resolution, reconstruction settings, and segmentation methods on the numerical calculation of saturated soil hydraulic conductivity from 3D computed tomography images

Geoderma - Tập 362 - Trang 114089 - 2020
V. Pot1, X. Zhong1, P.C. Baveye1
1INRA, AgroParisTech, Université Paris-Saclay, UMR ECOSYS, 78850 Thiverval-Grignon, France

Tài liệu tham khảo

Andrä, 2013, Digital rock physics benchmarks – part II: computing effective properties, Comput. Geosci., 50, 33, 10.1016/j.cageo.2012.09.008 Baveye, 2010, Observer-dependent variability of the thresholding step in the quantitative analysis of soil images and X-ray microtomography data, Geoderma, 157, 51, 10.1016/j.geoderma.2010.03.015 Baveye, 2017, Accounting for sub-resolution pores in models of water and solute transport in soils based on computed tomography images: are we there yet?, J. Hydrol., 555, 10.1016/j.jhydrol.2017.10.021 Berg, 2016, Fundamental transport property relations in porous media incorporating detailed pore structure description, Transp. Porous Media, 112, 467, 10.1007/s11242-016-0661-7 Bernabé, 1998, Effect of the variance of pore size distribution on the transport properties of heterogeneous networks, J. Geophys. Res., 103, 513, 10.1029/97JB02486 Bribiesca, 2008, An easy measure of compactness for 3D and 3D shapes, Pattern Recogn., 41, 543, 10.1016/j.patcog.2007.06.029 Cnudde, 2006, Recent progress in X-ray CT as a geosciences tool, Appl. Geochem., 21, 826, 10.1016/j.apgeochem.2006.02.010 Dal Ferro, 2015, Application of smoothed particle hydrodynamics (SPH) and pore morphologic model to predict saturated water conductivity from X-ray CT imaging in a silty loam Cambisol, Geoderma, 255–256, 27, 10.1016/j.geoderma.2015.04.019 Dijkstra, 1971 Ebrahimi, 2015, Hydration and diffusion processes shape microbial community organization and function in model soil aggregates, Water Resour. Res., 51, 10.1002/2015WR017565 Gackiewicz, 2019, Saturated water conductivity estimation based on X-ray CT images: evaluation of the impact of thresholding errors, Int. Agrophys., 33, 49, 10.31545/intagr/104376 Genty, 2013, Numerical simulation of 3D liquid-gas distribution in porous media by a two-phase TRT lattice Boltzmann method, Transp. Porous Media, 96, 271, 10.1007/s11242-012-0087-9 Ginzburg, 2003, Multireflection boundary conditions for lattice Boltzmann models, Phys. Rev. E, 68, 10.1103/PhysRevE.68.066614 Ginzburg, 2008, Two-relaxation-time lattice Boltzmann scheme: about parametrization, velocity, pressure and mixed boundary conditions, Commun. Comput. Phys., 3, 427 Guibert, 2015, Computational permeability determination from pore-scale imaging: sample size, mesh and method sensitivities, Transp. Porous Media, 107, 641, 10.1007/s11242-015-0458-0 Hapca, 2013, New local thresholding method for soil images by minimizing grayscale intra-class variance, Vadose Zone J., 12, 10.2136/vzj2012.0172 Houston, 2013, Adaptive-window indicator kriging: a thresholding method for computed tomography images of porous media, Comput. Geosci., 54, 239, 10.1016/j.cageo.2012.11.016 Houston, 2013, Effect of scanning and image reconstruction settings in X-ray computed microtomography on quality and segmentation of 3D soil images, Geoderma, 207–208, 154, 10.1016/j.geoderma.2013.05.017 Iassonov, 2009, Segmentation of X-ray computed tomography images of porous materials: a crucial step for characterization and quantitative analysis of pore structures, Water Resour. Res., 45, W09415, 10.1029/2009WR008087 Jones, 2016, Effect of image scaling and segmentation in digital rock characterisation, Compos. Part Mech., 3, 201, 10.1007/s40571-015-0077-0 Kang, 2019, Stokes-Brinkman flow simulation based on 3-D μ-CT images fo porous rock using grayscale pore voxel permeability, Water Resour. Res., 55, 4448, 10.1029/2018WR024179 Katz, 1986, Quantitative prediction of permeability in porous rock, Phys. Rev. B, 34, 8179, 10.1103/PhysRevB.34.8179 Ketcham, 2001, Acquisition, optimization and interpretation of X-ray computed tomograpic imagery: applications to the geosciences, Comput. Geosci., 27, 381, 10.1016/S0098-3004(00)00116-3 Khan, 2012, 3D simulation of the permeability tensor in a soil aggregate on basis of nanotomography imaging and LBE solver, J. Soils Sedim., 12, 86, 10.1007/s11368-011-0435-3 Koponen, 1996, Tortuous flow in porous media, Phys. Rev. E, 54, 406, 10.1103/PhysRevE.54.406 Koestel, 2018, Estimating the permeability of naturally structured soil from percolation theory and pore space characteristics imaged by X-Ray, Water Resour. Res., 54, 9255, 10.1029/2018WR023609 Larsbo, 2014, Relations between macropore network characteristics and the degree of preferential solute transport, Hydrol. Earth Syst. Sci., 18, 5255, 10.5194/hess-18-5255-2014 Leu, 2014, Fast X-ray micro-tomography of multiphase flow in Berea Sandstone: a sensitivity study on image processing, Transp. Porous Media, 105, 451, 10.1007/s11242-014-0378-4 Monga, 2014, Simulating microbial degradation of organic matter in a simple porous system using the 3-D diffusion-based model MOSAIC, Biogeosciences, 11, 2201, 10.5194/bg-11-2201-2014 Nishiyama, 2017, Permeability of porous media – role of the critical pore size, J. Geophys. Res.: Solid Earth, 122, 6955, 10.1002/2016JB013793 Otsu, 1979, A threshold selection method from gray-level histograms, IEEE Trans. Syst. Man Cybern., SMC-9, 62, 10.1109/TSMC.1979.4310076 Peth, 2010, Three-dimensional quantification of intra-aggregate pore-space features using synchrotron-radiation-based microtomography, Soil Sci. Soc. Am. J., 72, 897, 10.2136/sssaj2007.0130 Perret, 1999, Three-dimensional duantification of maropore network in undisturbed soil cores, Soil Sci. Soc. Am. J., 63, 1530, 10.2136/sssaj1999.6361530x Saxena, 2018, Imaging and computational considerations for image computed permeability: operating envelope of Digital Rock Physics, Adv. Water Resour., 116, 127, 10.1016/j.advwatres.2018.04.001 Saxena, 2017, References and benchmarks for pore-scale flow simulated using micro-CT images of porous media and digital rocks, Adv. Water Resour., 109, 211, 10.1016/j.advwatres.2017.09.007 Saxena, 2017, Effect of image segmentation & voxel size on micro-CT computed efective transport & elastic properties, Mar. Pet. Geol., 86, 972, 10.1016/j.marpetgeo.2017.07.004 Shah, 2016, Micro-computed tomography pore-scale study of flow in porous media: effect of voxel resolution, Adv. Water Resour., 95, 276, 10.1016/j.advwatres.2015.07.012 Schlüter, 2010, Segmentation of X-ray microtomography images of soil using gradient masks, Comput. Geosci., 36, 1246, 10.1016/j.cageo.2010.02.007 Schlüter, 2014, Image processing of multiphase images obtained via X-ray microtomography: a review, Water Resour. Res., 50, 3615, 10.1002/2014WR015256 Silin, 2011, Microtomography and pore-scale modelling of two-phase fluid distribution, Transp. Porous Media, 86, 495, 10.1007/s11242-010-9636-2 Skaggs, 2011, Assessment of critical path analyses of the relationship between permeability and electrical conductivity of pore networks, Adv. Water Resour., 34, 1335, 10.1016/j.advwatres.2011.06.010 Soulaine, 2016, The impact of sub-resolution porosity of X-ray microtomography images on the permeability, Transp. Porous Media, 113, 227, 10.1007/s11242-016-0690-2 Vogel, 2005, Comparison of a lattice-Boltzmann model, a full-morphology model, and a pore network model for determining capillary pressure-saturation relationships, Vadose Zone J., 4, 380, 10.2136/vzj2004.0114 Vogel, 2010, Quantification of soil structure based on Minkowski functions, Comput. Geosci., 36, 1236, 10.1016/j.cageo.2010.03.007 Vogel, 2015, Modeling the effect of soil meso- and macropores topology on the biodegradation of a soluble carbon substrate, Adv. Water Resour., 83, 123, 10.1016/j.advwatres.2015.05.020 Walsh, 2009, A new partial-bounceback lattice-Boltzmann method for fluid flow through heterogeneous media, Comput. Geosci., 35, 1186, 10.1016/j.cageo.2008.05.004 Wang, 2011, Comparison of image segmentation methods in simulated 2D and 3D microtomographic images of soil aggregates, Geoderma, 162, 231, 10.1016/j.geoderma.2011.01.006 Yan, 2018, Microscale water distribution and its effects on organic carbon decomposition in unsaturated soils, Sci. Total Environ., 644, 1036, 10.1016/j.scitotenv.2018.06.365 Zar, J.H., 1999. Biostatistical Analysis. Prentice Hall 663. Zhang, 2016, A Lattice Boltzmann model for simulating water flow at pore scale in unsaturated soils, J. Hydrol., 538, 152, 10.1016/j.jhydrol.2016.04.013