Effect of anode material and dispersal limitation on the performance and biofilm community in microbial electrolysis cells

Escapa, 2014, Potential use of microbial electrolysis cells in domestic wastewater treatment plants for energy recovery, Front Energy Res, 2, 10.3389/fenrg.2014.00019 Modin, 2017, Three promising applications of microbial electrochemistry for the water sector, Environ Sci J Integr Environ Res: Water Research & Technology, 3, 391 Yates, 2012, Convergent development of anodic bacterial communities in microbial fuel cells, ISME J, 6, 2002, 10.1038/ismej.2012.42 Kokko, 2018, Effects of wastewater constituents and operational conditions on the composition and dynamics of anodic microbial communities in bioelectrochemical systems, Bioresour Technol, 258, 376, 10.1016/j.biortech.2018.01.090 Koch, 2019, Trophic networks improve the performance of microbial anodes treating wastewater, npj Biofilms and Microbiomes, 5, 27, 10.1038/s41522-019-0100-y Shin, 2017, A genetic approach for microbial electrosynthesis system as biocommodities production platform, Bioresour Technol, 245, 1421, 10.1016/j.biortech.2017.05.077 De Vrieze, 2018, Interfacing anaerobic digestion with (bio)electrochemical systems: potentials and challenges, Water Res, 146, 244, 10.1016/j.watres.2018.08.045 Mateo, 2018, A critical view of microbial fuel cells: what is the next stage?, ChemSusChem, 11, 4183, 10.1002/cssc.201802187 Logan, 2019, Electroactive microorganisms in bioelectrochemical systems, Nat Rev Microbiol, 17, 307, 10.1038/s41579-019-0173-x Wang, 2016, Microbial community structure of different electrode materials in constructed wetland incorporating microbial fuel cell, Bioresour Technol, 221, 697, 10.1016/j.biortech.2016.09.116 Saheb-Alam, 2019, Response to starvation and microbial community composition in microbial fuel cells enriched on different electron donors, Microb Biotechnol, 12, 962, 10.1111/1751-7915.13449 Zhou, 2013, Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community, mBio, 4, 10.1128/mBio.00584-12 Evans, 2017, Effects of dispersal and selection on stochastic assembly in microbial communities, ISME J, 11, 176, 10.1038/ismej.2016.96 Krishnamurthy, 2013, Passivation of microbial corrosion using a graphene coating, Carbon, 56, 45, 10.1016/j.carbon.2012.12.060 Yu, 2016, Applications of graphene-modified electrodes in microbial fuel cells, Materials, 9, 10.3390/ma9100807 He, 2012, Enhanced electricity production from microbial fuel cells with plasma-modified carbon paper anode, Phys Chem Chem Phys, 14, 9966, 10.1039/c2cp40873b Baranitharan, 2013, Bioelectricity generation from palm oil mill effluent in microbial fuel cell using polacrylonitrile carbon felt as electrode, Water, Air, Soil Pollut, 224, 1533, 10.1007/s11270-013-1533-1 Geim, 2007, The rise of graphene, Nat Mater, 6, 183, 10.1038/nmat1849 McAllister, 2007, Single sheet functionalized graphene by oxidation and thermal expansion of graphite, Chem Mater, 19, 4396, 10.1021/cm0630800 Pumera, 2009, Electrochemistry of graphene: new horizons for sensing and energy storage, Chem Rec, 9, 211, 10.1002/tcr.200900008 Liu, 2012, Graphene/carbon cloth anode for high-performance mediatorless microbial fuel cells, Bioresour Technol, 114, 275, 10.1016/j.biortech.2012.02.116 Wang, 2013, A graphene/poly(3,4-ethylenedioxythiophene) hybrid as an anode for high-performance microbial fuel cells, Chempluschem, 78, 823, 10.1002/cplu.201300102 Dai, 2016, Electrochemical evaluation of nano-Mg(OH)2/graphene as a catalyst for hydrogen evolution in microbial electrolysis cell, Fuel, 174, 251, 10.1016/j.fuel.2016.02.013 Perreault, 2014, Thin-film composite polyamide membranes functionalized with biocidal graphene oxide nanosheets, Environ Sci Technol Lett, 1, 71, 10.1021/ez4001356 Wang, 2019, Nanocarbon materials in water disinfection: state-of-the-art and future directions, Nanoscale, 11, 9819, 10.1039/C9NR02007A Firouzjaei, 2020, Recent advances in functionalized polymer membranes for biofouling control and mitigation in forward osmosis, J Membr Sci, 596, 10.1016/j.memsci.2019.117604 Kumar, 2016, Comprehensive review on the use of graphene-based substrates for regenerative medicine and biomedical devices, ACS Appl Mater Interfaces, 8, 26431, 10.1021/acsami.6b09801 Xia, 2019, Graphene-based nanomaterials: the promising active agents for antibiotics-independent antibacterial applications, J Contr Release, 307, 16, 10.1016/j.jconrel.2019.06.011 Saheb-Alam, 2018, Effect of start-up strategies and electrode materials on carbon dioxide reduction on biocathodes, Appl Environ Microbiol, 84, 10.1128/AEM.02242-17 Marshall, 2012, Electrosynthesis of commodity chemicals by an autotrophic microbial community, Appl Environ Microbiol, 78, 8412, 10.1128/AEM.02401-12 Chen, 2018, fastp: an ultra-fast all-in-one FASTQ preprocessor, Bioinformatics, 34, i884, 10.1093/bioinformatics/bty560 Li, 2015, MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph, Bioinformatics, 31, 1674, 10.1093/bioinformatics/btv033 Langmead, 2012, Fast gapped-read alignment with Bowtie 2, Nat Methods, 9, 357, 10.1038/nmeth.1923 Kang, 2019, MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies, PeerJ, 7, 10.7717/peerj.7359 Li, 2018, Minimap2: pairwise alignment for nucleotide sequences, Bioinformatics, 34, 3094, 10.1093/bioinformatics/bty191 Nissen, 2021, Improved metagenome binning and assembly using deep variational autoencoders, Nat Biotechnol, 10.1038/s41587-020-00777-4 Parks, 2015, CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes, Genome Res, 25, 1043, 10.1101/gr.186072.114 Chaumeil, 2022, GTDB-Tk v2: memory friendly classification with the genome taxonomy database, Bioinformatics, 38, 5315, 10.1093/bioinformatics/btac672 Jain, 2018, High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries, Nat Commun, 9, 5114, 10.1038/s41467-018-07641-9 Chao, 2014, Unifying species diversity, phylogenetic diversity, functional diversity, and related similarity and differentiation measures through Hill numbers, Annu Rev Ecol Evol Syst, 45, 297, 10.1146/annurev-ecolsys-120213-091540 Modin, 2020, Hill-based dissimilarity indices and null models for analysis of microbial community assembly, Microbiome, 8, 132, 10.1186/s40168-020-00909-7 Pielou, 1966, The measurement of diversity in different types of biological collections, J Theor Biol, 13, 131, 10.1016/0022-5193(66)90013-0 Seabold, 2010, statsmodels: econometric and statistical modeling with python, 10.25080/Majora-92bf1922-011 Virtanen, 2020, SciPy 1.0: fundamental algorithms for scientific computing in Python, Nat Methods, 17, 261, 10.1038/s41592-019-0686-2 Azen, 2003, The dominance analysis approach for comparing predictors in multiple regression, Psychol Methods, 8, 129, 10.1037/1082-989X.8.2.129 McKinney, 2010, Data structures for statistical computing in python, Proc 9th Python Sci Conf, 445, 51 2020 Oksanen J Yang, 2022, Geobacter benzoatilyticus sp. nov., a novel benzoate-oxidizing, iron-reducing bacterium isolated from petroleum contaminated soil, Int J Syst Evol Microbiol, 72, 10.1099/ijsem.0.005281 Jost, 2006, Entropy and diversity, Oikos, 113, 363, 10.1111/j.2006.0030-1299.14714.x De-la-Pinta, 2019, Effect of biomaterials hydrophobicity and roughness on biofilm development, J Mater Sci Mater Med, 30, 77, 10.1007/s10856-019-6281-3 Pandit, 2018, Vertically aligned graphene coating is bactericidal and prevents the formation of bacterial biofilms, Adv Mater Interfac, 5, 10.1002/admi.201701331 Pandit, 2021, Graphene-based antimicrobial biomedical surfaces, ChemPhysChem, 22, 250, 10.1002/cphc.202000769 Abadikhah, 2022, Evidence of competition between electrogens shaping electroactive microbial communities in microbial electrolysis cells, Front Microbiol, 13, 10.3389/fmicb.2022.959211 Niederdorfer, 2021, Distinct growth stages controlled by the interplay of deterministic and stochastic processes in functional anammox biofilms, Water Res, 200, 10.1016/j.watres.2021.117225 Lee, 2009, Effects of substrate diffusion and anode potential on kinetic parameters for anode-respiring bacteria, Environ Sci Technol, 43, 7571, 10.1021/es9015519 Reguera, 2005, Extracellular electron transfer via microbial nanowires, Nature, 435, 1098, 10.1038/nature03661 Reguera, 2006, Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells, Appl Environ Microbiol, 72, 7345, 10.1128/AEM.01444-06 Cai, 2016, Enhanced hydrogen production in microbial electrolysis cell with 3D self-assembly nickel foam-graphene cathode, Biosens Bioelectron, 80, 118, 10.1016/j.bios.2016.01.008 Liu, 2011, Antibacterial activity of graphite, graphite oxide, graphene oxide, and reduced graphene oxide: membrane and oxidative stress, ACS Nano, 5, 6971, 10.1021/nn202451x Ruiz, 2011, Graphene oxide: a nonspecific enhancer of cellular growth, ACS Nano, 5, 8100, 10.1021/nn202699t Liao, 2018, Graphene nanomaterials: synthesis, biocompatibility, and cytotoxicity, Int J Mol Sci, 19, 10.3390/ijms19113564 Sasaki, 2009, Effect of adding carbon fiber textiles to methanogenic bioreactors used to treat an artificial garbage slurry, J Biosci Bioeng, 108, 130, 10.1016/j.jbiosc.2009.03.003 Tsai, 2009, Microbial fuel cell performance of multiwall carbon nanotubes on carbon cloth as electrodes, J Power Sources, 194, 199, 10.1016/j.jpowsour.2009.05.018 Zahran, 1991, Electrical conductivity of nickel reinforced graphite electrodes, Mater Lett, 10, 461, 10.1016/0167-577X(91)90240-7 Chao, 2010, Phylogenetic diversity measures based on Hill numbers, Phil Trans Roy Soc Lond B Biol Sci, 365, 3599, 10.1098/rstb.2010.0272 Bond, 2003, Electricity production by Geobacter sulfurreducens attached to electrodes, Appl Environ Microbiol, 69, 1548, 10.1128/AEM.69.3.1548-1555.2003 Wang, 2023, Distinguishing anaerobic digestion from electrochemical anaerobic digestion: metabolic pathways and the role of the microbial community, Chemosphere, 326, 10.1016/j.chemosphere.2023.138492 Katuri, 2020, Electroactive biofilms on surface functionalized anodes: the anode respiring behavior of a novel electroactive bacterium, Desulfuromonas acetexigens, Water Res, 185, 10.1016/j.watres.2020.116284 Janssen, 1999, Succinispira mobilis gen. nov., sp. nov., a succinate-decarboxylating anaerobic bacterium, Int J Syst Evol Microbiol, 49, 1009, 10.1099/00207713-49-3-1009