Ecological and historical views of the diversification of Geositta miners (Aves: Furnariidae: Sclerurinae)

Ahmadzadeh F, Flecks M, Carretero MA, Böhme W, Ilgaz C, Engler JO, James HD, Üzüm N, Rödder D (2013) Rapid lizard radiation lacking niche conservatism: ecological diversification within a complex landscape. J Biogeogr 40:1807–1818 Anderson RP, Raza A (2010) The effect of the extent of the study region on GIS models of species geographic distributions and estimates of niche evolution: preliminary tests with montane rodents (genus Nephelomys) in Venezuela. J Biogeogr 37:1378–1393 Antonelli A, Nylander JAA, Persson C, Sanmartín I (2009) Tracing the impact of the Andean uplift on Neotropical plant evolution. P Natl A Sci 106:9749–9754 Avise JC (1998) Pleistocene phylogeographic effects on avian populations and the speciation process. P Roy Soc B-Biol Sci 265:457–463 Barve N (2008) Tool for partial-ROC. Biod Inst, Lawrence, KS, ver 1. https://kuscholarworks.ku.edu/handle/1808/10059. Accessed 20 Feb 2015 Barve N, Barve V, Jiménez-Valverde A, Lira-Noriega A, Maher SP, Peterson AT, Soberón J, Villalobos F (2011) The crucial role of the accessible area in ecological niche modeling and species distribution modeling. Ecol Mod 222:1810–1819 Chaves JA, Weir JT, Smith TB (2011) Diversification in Adelomyia hummingbirds follows Andean uplift. Mol Ecol 20:4564–4576 Cheviron ZA, Capparella AP, Vuilleumier F, Johnson KP (2005) Molecular phylogenetic relationships among the Geositta miners (Furnariidae) and biogeographic implications for avian speciation in Fuego-Patagonia. Auk 122:158–174 Derryberry EP, Claramunt S, Derryberry G, Chesser RT, Cracraft J, Aleixo A, Pérez-Emán J, Remsen JV Jr, Brumfield RT (2011) Lineage diversification and morphological evolution in a large-scale continental radiation: the neotropical ovenbirds and woodcreepers (Aves: Furnariidae). Evolution 65:2973–2986 Foden WB, Butchart SHM, Stuart SN, Vié JC, Akçakaya HR, Angulo A, Devantier LM, Gutsche A, Turak E, Cao L (2013) Identifying the world’s most climate change vulnerable species: a systematic trait-based assessment of all birds, amphibians and corals. PLoS One 8:e65427 Garzione CN, Hoke GD, Libarkin JC, Withers S, Macfadden B, Eiler J, Ghosh P, Mulch A (2008) Rise of the Andes. Science 320:1304–1307 Hawlitschek O, Porch N, Hendrich L, Balke M (2011) Ecological niche modelling and nDNA sequencing support a new, morphologically cryptic beetle species unveiled by DNA barcoding. PLoS One 6:1–14 Heibl C, Calenge C, Heibl MC (2013) Package ‘phyloclim’. https://cran.r-project.org/web/packages/phyloclim/index.html. Accessed 15 May 2015 Hijmans R, Van Etten J (2014) raster: raster: Geographic data analysis and modeling. R package version 517:2.2–12. https://cran.r-project.org/web/packages/raster/index.html published in 2016. Accessed 15 May 2015 Hoffmann AA, Sgrò CM (2011) Climate change and evolutionary adaptation. Nature 470:479–485 Hoorn C, Wesselingh FP, Ter Steege H, Bermudez MA, Mora A, Sevink J, Sanmartín M, Sanchez-Meseguer A, Anderson CL, Figueiredo JP, Jaramillo C, Riff D, Negri FR, Hooghiemstra H, Lundberg J, Stadler T, Särkinen T, Antonelli A (2010) Amazonia through time: andean uplift, climate change, landscape evolution, and biodiversity. Science 330:927–931 Horn C, Wesselingh FP, Ter Steege H, Bermudez MA, Mora A, Sevink J, Sanmartín I, Sanchez-Meseguer A, Anderson CL, Figueiredo JP (2010) Amazonia through time: Andean uplift, climate change, landscape evolution, and biodiversity. Science 330:927–931 Lavergne S, Evans MEK, Burfield IJ, Jiguet F, Thuiller W (2013) Are species’ responses to global change predicted by past niche evolution? Phil Trans Roy Soc B 368:20120091 Leier A, Mcquarrie N, Garzione C, Eiler J (2013) Stable isotope evidence for multiple pulses of rapid surface uplift in the Central Andes, Bolivia. Earth Planet Sc Lett 371:49–58 Matzke NJ (2014) Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Syst Biol 63:951–970 Matzke NJ (2015) BioGeoBEARS: BioGeography with Bayesian (and Likelihood) evolutionary analysis in R scripts. R package version 0.2.1. http://CRAN.R-project.org/package=BioGeoBEARS. Accessed 20 June 2016 Nyári ÁS, Reddy S (2013) Comparative phyloclimatic analysis and evolution of ecological niches in the scimitar babblers (Aves: Timaliidae: Pomatorhinus). PLoS One 8:e55629 Paradis E, Claude J, Strimmer K (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289–290 Peters JL (1931) Check-list of birds of the world, vol II. Harvard University Press, Cambridge Peterson AT, Soberón J, Sánchez-Cordero V (1999) Conservatism of ecological niches in evolutionary time. Science 285:1265–1267 Peterson AT, Papeş M, Soberón J (2008) Rethinking receiver operating characteristic analysis applications in ecological niche modeling. Ecol Model 213:63–72 Phillips SJ, Dudík M (2008) Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography 31:161–175 Picard D, Sempere T, Plantard O (2008) Direction and timing of uplift propagation in the Peruvian Andes deduced from molecular phylogenetics of highland biotaxa. Earth Planet Sc Lett 271:326–336 Poulsen CJ, Ehlers TA, Insel N (2010) Onset of convective rainfall during gradual late Miocene rise of the central Andes. Science 328:490–493 Quintero I, Wiens JJ (2013) Rates of projected climate change dramatically exceed past rates of climatic niche evolution among vertebrate species. Ecol Lett 16:1095–1103 R Development Core Team 2014 R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, 2012. ISBN 3-900051-07-0 Remsen JV, Del Hoyo J, Elliott A, Christie D (2003) Family Furnariidae (ovenbirds). In: Hoyo J, Elliot A, Christie DA (eds) Handbook of the birds of the world. Lynx Edicions, Barcelona, pp 162–201 Shepard DB, Burbrink FT (2009) Phylogeographic and demographic effects of Pleistocene climatic fluctuations in a montane salamander, Plethodon fourchensis. Mol Ecol 18:2243–2262 Soberón J, Nakamura M (2009) Niches and distributional areas: concepts, methods, and assumptions. P Natl Acad Sci 106:19644–19650 Tobias JA, Cornwallis CK, Derryberry EP, Claramunt S, Brumfield RT, Seddon N (2014) Species coexistence and the dynamics of phenotypic evolution in adaptive radiation. Nature 506:359–363 Vaurie C (1971) Classification of the ovenbirds (Furnariidae). Whitby, London Vaurie C, Vuilleumier F (1980) Taxonomy and geographical distribution of the Furnariidae (Aves, Passeriformes). Bull Am Mus Nat Hist 166:1–357 Vuilleumier F (1991) A quantitative survey of speciation phenomena in Patagonian birds. Ornitol Neotrop 2:5–28 Warren DL, Glor RE, Turelli M (2008) Environmental niche equivalency versus conservatism: quantitative approaches to niche evolution. Evolution 62:2868–2883 Weir JT, Price M (2011) Andean uplift promotes lowland speciation through vicariance and dispersal in Dendrocincla woodcreepers. Mol Ecol 20:4550–4563 Wiens JJ, Graham CH (2005) Niche conservatism: integrating evolution, ecology, and conservation biology. Ann Rev Ecol Evol Syst 36:519–539