ECDC/EFSA/EMA second joint report on the integrated analysis of the consumption of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from humans and food‐producing animals
Tóm tắt
Từ khóa
Tài liệu tham khảo
Alsamarai, 2015, Nasal carriage of methicillin resistant Staph aureus in food provider in restaurant at Samara city, World Journal of Pharmacy and Pharmaceutical Sciences, 4, 50
Aviv, 2014, A unique megaplasmid contributes to stress tolerance and pathogenicity of an emergent Salmonella enterica serovar Infantis strain, Environmental Microbiology, 16, 977, 10.1111/1462-2920.12351
Blix, 2007, Age‐and gender‐specific antibacterial prescribing in Norway, Journal of Antimicrobial Chemotherapy, 59, 971, 10.1093/jac/dkm032
Brink, 2013, Emergence of OXA‐48 and OXA‐181 carbapenemases among Enterobacteriaceae in South Africa and evidence of in vivo selection of colistin resistance as a consequence of selective decontamination of the gastrointestinal tract, Journal of Clinical Microbiology, 51, 369, 10.1128/JCM.02234-12
Borowiak, 2017, VIM‐1‐producing Salmonella Infantis isolated from swine and minced pork meat in Germany, Journal of Antimicrobial Chemotherapy, 72, 2131, 10.1093/jac/dkx101
Broens E, Van Cleef B, Graat E and Kluytmans J, 2008. Transmission of methicillin‐resistant Staphylococcus aureus from food production animals to humans: a review. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 3, ISSN 1749‐8848 ‐ p. 095 ‐ 095. https://doi.org/10.1079/pavsnnr20083095.
Catry, 2010, Reflection paper on MRSA in food‐producing and companion animals: epidemiology and control options for human and animal health, Epidemiology and Infection, 138, 626, 10.1017/S0950268810000014
Cohn, 2010, A veterinary perspective on methicillin‐resistant staphylococci, Journal of Veterinary Emergency and Critical Care, 20, 31, 10.1111/j.1476-4431.2009.00497.x
Cole, 2000, Concentrated swine feeding operations and public health: a review of occupational and community health effects, Environmental Health Perspectives, 108, 685, 10.1289/ehp.00108685
Di Pilato, 2016, mcr‐1.2, a new mcr variant carried on a transferable plasmid from a colistin‐resistant KPC carbapenemase‐producing Klebsiella pneumoniae strain of sequence type 512, Antimicrobial Agents and Chemotherapy, 60, 5612, 10.1128/AAC.01075-16
Durham, 2010, Modeling antibiotic resistance to project future rates: quinolone resistance in Escherichia coli, European Journal of Clinical Microbiology and Infectious Diseases, 29, 353, 10.1007/s10096-009-0862-x
ECDC (European Centre for Disease Prevention and Control), 2014a. Antimicrobial resistance surveillance in Europe 2013. Annual Report of the European Antimicrobial Resistance Surveillance Network (EARS‐Net). Available online: http://ecdc.europa.eu/en/publications/Publications/antimicrobial-resistance-surveillance-europe-2013.pdf
ECDC (European Centre for Disease Prevention and Control), 2014b. Surveillance of antimicrobial consumption in Europe 2012. Available online http://ecdc.europa.eu/en/publications/Publications/antimicrobial-consumption-europe-esac-net-2012.pdf
ECDC (European Centre for Disease Prevention and Control), 2015. Antimicrobial resistance surveillance in Europe 2014. Annual Report of the European Antimicrobial Resistance Surveillance Network (EARS‐Net). Available online: http://ecdc.europa.eu/en/publications/Publications/antimicrobial-resistance-europe-2014.pdf
ECDC (European Centre for Disease Prevention and Control), 2016a. EU protocol for harmonised monitoring of antimicrobial resistance in human Salmonella and Campylobacter isolates. Available online: http://ecdc.europa.eu/en/publications/Publications/antimicrobial-resistance-Salmonella-Campylobacter-harmonised-monitoring.pdf
ECDC (European Centre for Disease Prevention and Control), 2016b. Rapid Risk Assessment ‐ plasmid‐mediated colistin resistance in Enterobacteriaceae Available online: http://ecdc.europa.eu/en/publications/Publications/enterobacteriaceae-risk-assessment-diseases-caused-by-antimicrobial-resistant-microorganisms-europe-June-2016.pdf
ECDC (European Centre for Disease Prevention and Control), 2016c. Summary of the latest data on antibiotic consumption in the European Union. ESAC‐Net data. Available online: http://ecdc.europa.eu/en/eaad/antibiotics-get-informed/antibiotics-resistance-consumption/Documents/antibiotics-ESAC-Net%20Summary%202016.pdf
ECDC (European Centre for Disease Prevention and Control), 2017a. Antimicrobial resistance surveillance in Europe 2015. Annual Report of the European Antimicrobial Resistance Surveillance Network (EARS‐Net). Available online: http://ecdc.europa.eu/en/publications/Publications/antimicrobial-resistance-europe-2015.pdf
ECDC (European Centre for Disease Prevention and Control), 2017b. Proposals for EU guidelines on the prudent use of antimicrobials in humans. Available online: http://ecdc.europa.eu/en/publications/Publications/EU-guidelines-prudent-use-antimicrobials.pdf
ECDC/EFSA/EMA, 2015, First joint report on the integrated analysis of the consumption of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from humans and food‐producing animals (JIACRA), EFSA Journal, 13, 4006, 10.2903/j.efsa.2015.4006
EFSA, 2007, Report of the Task Force on Zoonoses Data Collection including a proposal for a harmonized monitoring scheme of antimicrobial resistance in Salmonella in fowl (Gallus gallus), turkeys and pigs and Campylobacter jejuni and C. coli in broilers, EFSA Journal, 5, 96r, 10.2903/j.efsa.2007.96r
EFSA, 2008, Report from the Task Force on Zoonoses Data Collection including guidance for harmonized monitoring and reporting of antimicrobial resistance in commensal Escherichia coli and Enterococcus spp. from food animals, EFSA Journal, 6, 141r, 10.2903/j.efsa.2008.141r
EFSA, 2012, Technical specifications on the harmonised monitoring and reporting of antimicrobial resistance in Salmonella, Campylobacter and indicator Escherichia coli and Enterococcus spp. bacteria transmitted through food, EFSA Journal, 10, 2742
EFSA, 2014, Technical specifications on randomised sampling for harmonised monitoring of antimicrobial resistance in zoonotic and commensal bacteria, EFSA Journal, 12, 3686
EFSA BIOHAZ Panel, 2013, Scientific Opinion on Carbapenem resistance in food animal ecosystems, EFSA Journal, 11, 3501
EFSA/ECDC, 2014, The European Union Summary Report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2012, EFSA Journal, 12, 3590
EFSA/ECDC, 2015, EU Summary Report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2013, EFSA Journal, 13, 4036
EFSA/ECDC, 2016, The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2014, EFSA Journal, 14, 4380
EFSA/ECDC, 2017, The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2015, EFSA Journal, 15, 4694
EMA (European Medicines Agency), 2013. Use of colistin products in animals within the European Union: development of resistance and possible impact on human and animal health (EMA/755938/2012). Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Report/2013/07/WC500146813.pdf
EMA/AMEG (European Medicines Agency ‐ Antimicrobial Advice Ad Hoc Expert Group), 2014. Answers to the requests for scientific advice on the impact on public health and animal health of the use of antibiotics in animals ‐ Answer to the second request from the EC (ranking of antibiotics); Answer to the third request from the EC (new antibiotics); Answer to the fourth request from the EC (risk mitigation options) (EMA/381884/2014). European Medicines Agency. Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Other/2014/07/WC500170253.pdf
EMA/AMEG (European Medicines Agency ‐ Antimicrobial Advice Ad Hoc Expert Group), 2016. Updated advice on the use of colistin products in animals within the European Union: development of resistance and possible impact on human and animal health (EMA/CVMP/CHMP/231573/2016). Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Scientific_guideline/2016/07/WC500211080.pdf
EMA/CVMP (European Medicines Agency ‐ Committee for Medicinal Products for Veterinary Use), 2012. Opinion following an Article 35 referral for all veterinary medicinal products containing systemically administered (parenteral and oral) 3rd and 4th generation cephalosporins intended for use in food producing species. Available online: http://www.ema.europa.eu/ema/index.jsp?curl=pages/medicines/veterinary/referrals/Cephalosporins/vet_referral_000056.jsp&mid=WC0b01ac05805c5170
EMA/CVMP (European Medicines Agency and European Food Safety Authority), 2016. CVMP strategy on antimicrobials 2016‐2020 (EMA/CVMP/209189/2015). Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Scientific_guideline/2016/10/WC500214901.pdf
EMA/EFSA , 2017. Joint Scientific Opinion on measures to reduce the need to use antimicrobial agents in animal husbandry in the European Union, and the resulting impacts on food safety (RONAFA). [EMA/CVMP/570771/2015]. EFSA Journal 2017;15(1):4666, 245 pp. https://doi.org/10.2903/j.efsa.2017.4666
EMA/ESVAC (European Medicines Agency ‐ European Surveillance of Veterinary Antimicrobial Consumption), 2011. European Medicines Agency. Trends in the sales of veterinary antimicrobial agents in nine European countries. Reporting period: 2005−2009 (EMA/238630/2011). Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Report/2011/09/WC500112309.pdf
EMA/ESVAC (European Medicines Agency ‐ European Surveillance of Veterinary Antimicrobial Consumption), 2015. Principles on assignment of defined daily dose for animals (DDDA) and defined course dose for animals (DCDA) (EMA/710019/2014). Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Scientific_guideline/2015/03/WC500184369.pdf
EMA/ESVAC (European Medicines Agency ‐ European Surveillance of Veterinary Antimicrobial Consumption), 2016a. European Medicines Agency, European Surveillance of Veterinary Antimicrobial Consumption. Sales of veterinary antimicrobial agents in 29 EU/EEA countries in 2014 (EMA/61769/2016). Trends from 2011 to 2014. Sixth ESVAC report. Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Report/2016/10/WC500214217.pdf
EMA/ESVAC (European Medicines Agency ‐ European Surveillance of Veterinary Antimicrobial Consumption), 2016b. European Surveillance of Veterinary Antimicrobial Consumption ‐ Web Based Sales Data and Animal Population Data Collection Protocol (version 2). Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Other/2015/06/WC500188365.pdf
EMEA/CVMP (European Medicines Agency ‐ Committee for Medicinal Products for Veterinary Use), 2009. Revised reflection paper on the use of 3rd and 4th generation cephalosporins in food producing animals in the European Union: development of resistance and impact on human and animal health (EMEA/CVMP/SAGAM/81730/2006‐Rev.1). Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Scientific_guideline/2009/10/WC500004307.pdf
EUCAST , 2014. Screening for fluoroquinolone resistance in Salmonella spp. with pefloxacin 5 μg. Tentative quality control criteria for users and disk manufacturers. Available online: http://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/QC/Tentative_QC_criteria_for_pefloxacin_5__g.pdf
European Commission , 2011. Communication from the Commission to the European Parliament and the Council: Action plan against the rising threats from antimicrobial resistance (2011). Available online: http://ec.europa.eu/dgs/health_consumer/docs/communication_amr_2011_748_en.pdf
European Commission, 2016. Request for a joint ECDC, EFSA and EMA scientific opinion on a list of outcome indicators. Ref. Ares(2016)5834652 ‐ 10/10/2016 Available online: http://www.ema.europa.eu/docs/en_GB/document_library/Other/2016/12/WC500217472.pdf
Feasey, 2016, Enteritidis Distinct Salmonella lineages associated with enterocolitis in high‐income settings and invasive disease in low‐income settings, Nature Genetics, 48, 1211, 10.1038/ng.3644
Feltrin, 2016, A livestock‐associated, multidrug‐resistant, methicillin‐resistant Staphylococcus aureus clonal complex 97 lineage spreading in dairy cattle and pigs in Italy, Applied and Environmental Microbiology, 82, 816, 10.1128/AEM.02854-15
Florez‐Cuadrado, 2016, Description of an erm (Campylobacter B)‐carrying coli isolate in Europe, Journal of Chemotherapy Antimicrobial, 71, 841, 10.1093/jac/dkv383
Gallini, 2010, Influence of fluoroquinolone consumption in inpatients and outpatients on ciprofloxacin‐resistant Escherichia coli in a university hospital, Journal of Antimicrobial Chemotherapy, 65, 2650, 10.1093/jac/dkq351
Gibreel, 2006, Macrolide resistance in Campylobacter jejuni and Campylobacter coli, Journal of Antimicrobial Chemotherapy, 58, 243, 10.1093/jac/dkl210
Halaby, 2013, Emergence of colistin resistance in enterobacteriaceae after the introduction of selective digestive tract decontamination in an intensive care unit, Antimicrobial Agents and Chemotherapy, 57, 3224, 10.1128/AAC.02634-12
Heuer OE, Diaz Högberg L and Suetens C, and EARS‐Net . 2014. Proportions of community‐associated and healthcare‐associated isolates in the EARS‐Net data vary depending on pathogen and antimicrobial combination – analysis of EARS‐Net data 2011‐2012 (poster). In ECCMID 2014.
Hopkins, 2010, Multiresistant Salmonella enterica serovar 4,[5], 12: i:‐in Europe: a new pandemic strain?, Euro Surveillance, 15, 19580
Huang, 2014, Detection of livestock‐associated methicillin‐resistant Staphylococcus aureus among swine workers in Romania, Journal of Infection and Public Health, 7, 323, 10.1016/j.jiph.2014.03.008
Institute SAS , 1999. SAS/STAT User's Guide, Version 9.2. In SAS Cary, NC.
Irrgang, 2016, Prevalence of mcr‐1 in E. Coli from livestock and food in Germany, 2010–2015, PLoS One, 11, e0159863, 10.1371/journal.pone.0159863
Jensen, 2010, Effect of generics on price and consumption of ciprofloxacin in primary healthcare: the relationship to increasing resistance, Journal of Antimicrobial Chemotherapy, 65, 1286, 10.1093/jac/dkq093
Kahlmeter, 2003, European harmonization of MIC breakpoints for antimicrobial susceptibility testing of bacteria, The Journal of Antimicrobial Chemotherapy, 52, 145, 10.1093/jac/dkg312
Lazarus, 2014, Do human extraintestinal Escherichia coli infections resistant to expanded‐spectrum cephalosporins originate from food‐producing animals? A systematic review, Clinical Infectious Diseases, 60, 430
Liakopoulos, 2016, Extended‐spectrum cephalosporin‐resistant Salmonella enterica serovar Heidelberg strains, the Netherlands, Emerging Infectious Diseases, 22, 1257, 10.3201/eid2207.151377
Liebana, 2013, Public health risks of enterobacterial isolates producing extended‐spectrum beta‐lactamases or AmpC beta‐lactamases in food and food‐producing animals: an EU perspective of epidemiology, analytical methods, risk factors, and control options, Clinical Infectious Diseases, 56, 1030, 10.1093/cid/cis1043
Liu, 2015, Emergence of plasmid‐mediated colistin resistance mechanism MCR‐1 in animals and human beings in China: a microbiological and molecular biological study, The Lancet Infectious Diseases, 16, 161, 10.1016/S1473-3099(15)00424-7
Lucarelli, 2010, Evidence for a second genomic island conferring multidrug resistance in a clonal group of strains of Salmonella enterica serovar Typhimurium and its monophasic variant circulating in Italy, Denmark, and the United Kingdom, Journal of Clinical Microbiology, 48, 2103, 10.1128/JCM.01371-09
Manges, 2012, Food‐borne origins of Escherichia coli causing extraintestinal infections, Clinical Infectious Diseases, 55, 712, 10.1093/cid/cis502
Monnet, 2001, Making sense of antimicrobial use and resistance surveillance data: application of ARIMA and transfer function models, Clinical Microbiology and Infection, 7, 29, 10.1046/j.1469-0691.2001.00071.x
Official Journal of the European Communities , 1998. Decision No 2119/98/EC of the European Parliament and of the Council of 24 September 1998 setting up a network for the epidemiological surveillance and control of communicable diseases in the Community. Available online: http://eur-lex.europa.eu/legal-content/EN/TXT/?qid=1416419000009&uri=CELEX:31998D2119
Official Journal of the European Communities , 2002. Regulation (EC) No 178/2002 of the European Parliament and of the Council of 28 January 2002 laying down the general principles and requirements of food law, establishing the European Food Safety Authority and laying down procedures in matters of food safety. Available online: http://eur-lex.europa.eu/legal-content/EN/TXT/?qid=1418924147681&uri=CELEX:32002R0178
Official Journal of the European Union , 2003. Directive 2003/99/EC of the European Parliament and of the Council of 17 November 2003 on the monitoring of zoonoses and zoonotic agents, amending Council Decision 90/424/EEC and repealing Council Directive 92/117/EEC. Available online: http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2003:325:0031:0040:EN:PDF
Official Journal of the European Union , 2004. Regulation (EC) No 851/2004 of the European Parliament and of the Council of 21 April 2004 establishing a European Centre for disease prevention and control. Available online: http://eur-lex.europa.eu/legal-content/EN/TXT/?qid=1416419193386&uri=CELEX:32004R0851
Official Journal of the European Union , 2013. Commission Implementing Decision of 12 November 2013 on the monitoring and reporting of antimicrobial resistance in zoonotic and commensal bacteria (2013/652/EU). Available online: http://eur-lex.europa.eu/legal-content/EN/TXT/?qid=1416491686645&uri=CELEX:32013D0652
Official Journal of the European Union , 2015. Commission notice ‐ Guidelines for the prudent use of antimicrobials in veterinary medicine (2015/C 299/04). Available online: http://ec.europa.eu/health/antimicrobial_resistance/docs/2015_prudent_use_guidelines_en.pdf
Ovejero, 2017, Spread of mcr‐1‐carrying Enterobacteriaceae in sewage water from Spain, Journal of Antimicrobial Chemotherapy, 72, 1050
Poirel, 2017, Polymyxins: antibacterial activity, susceptibility testing, and resistance mechanisms encoded by plasmids or chromosomes, Clinical Microbiology Reviews, 30, 557, 10.1128/CMR.00064-16
Pyorala, 2014, Macrolides and lincosamides in cattle and pigs: use and development of antimicrobial resistance, Vet Journal, 200, 230, 10.1016/j.tvjl.2014.02.028
Qin, 2014, Report of ribosomal RNA methylase gene erm(B) in multidrug‐resistant Campylobacter coli, Journal of Antimicrobial Chemotherapy, 69, 964, 10.1093/jac/dkt492
Rolain, 2016, Plasmid‐mediated mcr‐1 gene in colistin‐resistant clinical isolates of Klebsiella pneumoniae in France and Laos, Antimicrobial Agents and Chemotherapy AAC, 60, 6994, 10.1128/AAC.00960-16
Sanchez G, 2013. PLS path modeling with R. Trowchez Editions, Berkeley. Available online: http://www.gastonsanchez.com/PLS_Path_Modeling_with_R.pdf
Skov, 2016, Plasmid‐mediated colistin resistance (mcr‐1 gene): three months later, the story unfolds, Euro Surveillance, 21, 30155
Skov, 2015, Development of a pefloxacin disk diffusion method for detection of fluoroquinolone‐resistant Salmonella enterica, Journal of Clinical Microbiology, 53, 3411, 10.1128/JCM.01287-15
Søgaard, 1989, The epidemiology of antibiotic resistance in three species of the Enterobacteriaceae and the relation to consumption of antimicrobial agents in Odense University Hospital, Danish Medical Bulletin, 36, 65
Theuretzbacher, 2014, Product information for parenteral colistin varies substantially across Europe, Journal of Antimicrobial Chemotherapy, 69, 1987, 10.1093/jac/dku064
Van Der Mee‐Marquet, 2014, Emergence of a novel subpopulation of CC398 Staphylococcus aureus infecting animals is a serious hazard for humans, Frontiers in Microbiology, 5, 652, 10.3389/fmicb.2014.00652
Voss, 2005, Methicillin‐resistant Staphylococcus aureus in pig farming, Emerging Infectious Diseases, 11, 1965, 10.3201/eid1112.050428
Wang, 2014, Emergence of multidrug‐resistant Campylobacter species isolates with a horizontally acquired rRNA methylase, Antimicrobial Agents and Chemotherapy, 58, 5405, 10.1128/AAC.03039-14
Wasyl, 2015, High‐level fluoroquinolone resistant Salmonella enterica serovar Kentucky ST198 epidemic clone with IncA/C conjugative plasmid carrying bla CTX‐M‐25 gene, Veterinary Microbiology, 175, 85, 10.1016/j.vetmic.2014.10.014
WHO (World Health Organization), 2016. WHO methodology for a global programme on surveillance of antimicrobial consumption, Version 1.0. Available online: http://www.who.int/medicines/areas/rational_use/WHO_AMCsurveillance_1.0.pdf?ua=1
WHO (World Health Organization), 2017. Critically Important Antimicrobials for Human Medicine (5th revison) 2016. Available online: http://apps.who.int/iris/bitstream/10665/255027/1/9789241512220-eng.pdf?ua=1
Williams, 1982, Extra‐binomial variation in logistic linear models, Journal of the Royal Statistical Society. Series C (Applied Statistics), 31, 144
