Dynamic models of epidermal patterning as an approach to plant eco-evo-devo
Tài liệu tham khảo
Lee, 2001, Developmentally distinct MYB genes encode functionally equivalent proteins in Arabidopsis, Development, 128, 1539, 10.1242/dev.128.9.1539
Schiefelbein, 2003, Cell-fate specification in the epidermis: a common patterning mechanism in the root and shoot, Curr Opin Plant Biol, 6, 74, 10.1016/S136952660200002X
Benítez, 2011, Epidermal patterning in Arabidopsis: models make a difference, J Exp Zool B Mol Dev Evol, 316, 241, 10.1002/jez.b.21398
Grebe, 2011, The patterning of epidermal hairs in Arabidopsis-updated, Curr Opin Plant Biol, 15, 31, 10.1016/j.pbi.2011.10.010
Wang, 2007, TRICHOMELESS1 regulates trichome patterning by suppressing GLABRA1 in Arabidopsis, Development, 134, 3873, 10.1242/dev.009597
An, 2011, Progress on trichome development regulated by phytohormone signaling, Plant Signal Behav, 6, 1959, 10.4161/psb.6.12.18120
Kang, 2009, The MYB23 gene provides a positive feedback loop for cell fate specification in the Arabidopsis root epidermis, Plant Cell, 21, 1080, 10.1105/tpc.108.063180
Tominaga-Wada, 2012, Functional divergence of MYB-related genes, WEREWOLF and AtMYB23 in Arabidopsis, Biosci Biotechnol Biochem, 76, 883, 10.1271/bbb.110811
Bruex, 2011, A gene regulatory network for root epidermis cell differentiation in Arabidopsis, PLoS Genet, 8, e1002446, 10.1371/journal.pgen.1002446
Mendoza, 2000, Genetic regulation of root hair development in Arabidopsis thaliana: a network model, J Theor Biol, 204, 311, 10.1006/jtbi.2000.2014
Benítez, 2007, Equivalent genetic regulatory networks in different contexts recover contrasting spatial cell patterns that resemble those in Arabidopsis root and leaf epidermis: a dynamic model, Int J Dev Biol, 51, 139, 10.1387/ijdb.062183mb
Benítez, 2008, Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model, BMC Syst Biol, 16, 1
Savage, 2008, Mutual support mechanism through intercellular movement of CAPRICE and GLABRA3 can pattern the Arabidopsis root epidermis, PLoS Biol, 6, e235, 10.1371/journal.pbio.0060235
Digiuni, 2008, A competitive complex formation mechanism underlies trichome patterning on Arabidopsis leaves, Mol Syst Biol, 4, 217, 10.1038/msb.2008.54
Bouyer, 2008, Two-dimensional patterning by a trapping/depletion mechanism: the role of TTG1 and GL3 in Arabidopsis trichome formation, PLoS Biol, 6, e141, 10.1371/journal.pbio.0060141
Turing, 1952, The chemical basis of morphogenesis, Philos Trans R Soc Lond B Biol Sci, 237, 37, 10.1098/rstb.1952.0012
Meinhardt, 2000, Pattern formation by local self-activation and lateral inhibition, Bioessays, 22, 753, 10.1002/1521-1878(200008)22:8<753::AID-BIES9>3.0.CO;2-Z
Balkunde, 2010, Trichome patterning in Arabidopsis thaliana from genetic to molecular models, Curr Top Dev Biol, 91, 299, 10.1016/S0070-2153(10)91010-7
Benítez, 2010, Dynamic-module redundancy confers robustness to the gene regulatory network involved in hair patterning of Arabidopsis epidermis, Biosystems, 4, 134
Alvarez-Buylla, 2011, Mutually reinforcing patterning mechanisms, Nat Rev Mol Cell Biol, 316, 2011
Kitano, 2004, Biological robustness, Nat Rev Genet, 5, 826, 10.1038/nrg1471
Kwon, 2008, Coherent coupling of feedback loops: a design principle of cell signaling networks, Bioinformatics, 24, 1926, 10.1093/bioinformatics/btn337
Savage, 2007, From priming to plasticity: the changing fate of rhizodermic cells, Bioessays, 30, 75, 10.1002/bies.20693
Niklas, 2012, Plant development, auxin, and the subsystem incompleteness theorem, Front Plant Sci, 3, 37, 10.3389/fpls.2012.00037
Newman, 2000, Epigenetic mechanisms of character origination, J Exp Zool Part B, 288, 304, 10.1002/1097-010X(20001215)288:4<304::AID-JEZ3>3.0.CO;2-G
Hernández Hernández, 2012, Dynamic patterning modules in plant development and evolution, Int J Dev Biol, 56, 661, 10.1387/ijdb.120027mb
Telfer, 1997, Phase change and the regulation of trichome distribution in Arabidopsis thaliana, Development, 124, 645, 10.1242/dev.124.3.645
Tsukaya, 2000, Heteroblasty in Arabidopsis thaliana (L.) Heynh, Planta, 210, 536, 10.1007/s004250050042
Chien, 1995, Differential regulation of trichome formation on the adaxial and abaxial leaf surfaces by gibberellins and photoperiod in Arabidopsis thaliana (L.) Heynh, Plant Phys, 92, 1321
Perazza, 1998, Gibberellins promote trichome formation by Up-regulating GLABROUS1 in Arabidopsis, Plant Physiol, 117, 375, 10.1104/pp.117.2.375
Traw, 2003, Interactive effects of jasmonic acid, salicylic acid, and gibberellin on induction of trichomes in Arabidopsis, Plant Physiol, 133, 1367, 10.1104/pp.103.027086
Perry, 2007, Reprogramming of root epidermal cells in response to nutrient deficiency, Biochem Soc Trans, 35, 161, 10.1042/BST0350161
Yoshida, 2009, Jasmonic acid control of GLABRA3 links inducible defense and trichome patterning in Arabidopsis, Development, 136, 1039, 10.1242/dev.030585
Gan, 2006, GLABROUS INFLORESCENCE STEMS modulates the regulation by gibberellins of epidermal differentiation and shoot maturation in Arabidopsis, Plant Cell, 18, 1383, 10.1105/tpc.106.041533
Gan, 2007, Integration of cytokinin and gibberellin signalling by Arabidopsis transcription factors GIS, ZFP8 and GIS2 in the regulation of epidermal cell fate, Development, 134, 2073, 10.1242/dev.005017
Taiz, 2010
Qi, 2011, The Jasmonate-ZIM-domain proteins interact with the WD-Repeat/bHLH/MYB complexes to regulate Jasmonate-mediated anthocyanin accumulation and trichome initiation in Arabidopsis thaliana, Plant Cell, 23, 1795, 10.1105/tpc.111.083261
Schmidt, 2000, Role of hormones in the induction of iron deficiency responses in Arabidopsis roots, Plant Phys, 122, 1109, 10.1104/pp.122.4.1109
An, 2012, A zinc finger protein gene ZFP5 integrates phytohormone signaling to control root hair development in Arabidopsis, Plant J, 72, 474, 10.1111/j.1365-313X.2012.05094.x
Depuydt, 2011, Hormone signalling crosstalk in plant growth regulation, Curr Biol, 21, R365, 10.1016/j.cub.2011.03.013
Wang, 2008, Salt stress-induced cell reprogramming, cell fate switch and adaptive plasticity during root hair development in Arabidopsis, Plant Signal Behav, 3, 436, 10.4161/psb.3.7.5759
Niu, 2011, Auxin modulates the enhanced development of root hairs in Arabidopsis thaliana (L.) Heynh. under elevated CO(2), Plant Cell Environ, 34, 1304, 10.1111/j.1365-3040.2011.02330.x
Xia, 2012, The glabra1 mutation affects cuticle formation and plant responses to microbes, Plant Phys, 154, 833, 10.1104/pp.110.161646
Hulskamp, 1994, Genetic dissection of trichome cell development in Arabidopsis, Cell, 76, 555, 10.1016/0092-8674(94)90118-X
Schnittger, 2003, Misexpression of the cyclin-dependent kinase inhibitor ICK1/KRP1 in single-celled Arabidopsis trichomes reduces endoreduplication and cell size and induces cell death, Plant Cell, 15, 303, 10.1105/tpc.008342
Morohashi, 2009, A systems approach reveals regulatory circuitry for Arabidopsis trichome initiation by the GL3 and GL1 selectors, PLoS Genet, 5, e1000396, 10.1371/journal.pgen.1000396
Churchman, 2006, SIAMESE, a plant-specific cell cycle regulator, controls endoreplication onset in Arabidopsis thaliana, Plant Cell, 18, 3145, 10.1105/tpc.106.044834
Kasili, 2011, BRANCHLESS TRICHOMES links cell shape and cell cycle control in Arabidopsis trichomes, Development, 138, 2379, 10.1242/dev.058982
Bramsiepe, 2010, Endoreplication controls cell fate maintenance, PLoS Genet, 6, e1000996, 10.1371/journal.pgen.1000996
Hassan, 2010, JACKDAW controls epidermal patterning in the Arabidopsis root meristem through a non-cell-autonomous mechanism, Development, 137, 1523, 10.1242/dev.048777
Gilbert, 2003, The morphogenesis of evolutionary developmental biology, Int J Dev Biol, 47, 467
Pigliucci, 2007, Do we need an extended evolutionary synthesis?, Evolution, 61, 2743, 10.1111/j.1558-5646.2007.00246.x
Müller, 2007, Evo-devo: extending the evolutionary synthesis, Nat Rev Genet, 8, 943, 10.1038/nrg2219
West-Eberhard, 2005, Developmental plasticity and the origin of species differences, Proc Natl Acad Sci USA, 102, 6543, 10.1073/pnas.0501844102
Jablonka, 2007, Précis of evolution in four dimensions, Behav Brain Sci, 30, 353, 10.1017/S0140525X07002221
Waddington, 1957
Siegal-Gaskins, 2009, The capacity for multistability in small gene regulatory networks, BMC Syst Biol, 3, 96, 10.1186/1752-0509-3-96
Espinosa-Soto, 2011, Phenotypic plasticity can facilitate adaptive evolution in gene regulatory circuits, BMC Evol Biol, 11, 5, 10.1186/1471-2148-11-5
Kivimäki, 2007, Gene, phenotype and function: GLABROUS1 and resistance to herbivory in natural populations of Arabidopsis lyrata, Mol Ecol, 16, 453, 10.1111/j.1365-294X.2007.03109.x
Holeski, 2007, Within and between generation phenotypic plasticity in trichome density of Mimulus guttatus, J Evol Biol, 20, 2092, 10.1111/j.1420-9101.2007.01434.x
Holeski, 2012, Transgenerational defense induction and epigenetic inheritance in plants, Trends Ecol Evol, 27, 1, 10.1016/j.tree.2012.07.011
Herman, 2011, Adaptive transgenerational plasticity in plants: case studies, mechanisms, and implications for natural populations, Front Plant Sci, 2, 1, 10.3389/fpls.2011.00102
Scoville, 2012, Differential regulation of a MYB transcription factor is correlated with transgenerational epigenetic inheritance of trichome density in Mimulus guttatus, New Phytol, 191, 251, 10.1111/j.1469-8137.2011.03656.x
Latzel, 2012, Epigenetic variation in plant responses to defence hormones, Ann Bot, 110, 1, 10.1093/aob/mcs088
Waddington, 1942, Canalization of development and the inheritance of acquired characters, Nature, 150, 563, 10.1038/150563a0
Pitts, 1998, Auxin and ethylene promote root hair elongation in Arabidopsis, Plant J, 16, 553, 10.1046/j.1365-313x.1998.00321.x