Ruder W. C., 2011, Science, 333, 1248, 10.1126/science.1206843
Basu S., 2005, Nature, 434, 1130, 10.1038/nature03461
Liu C., 2011, Science, 334, 238, 10.1126/science.1209042
Tamsir A., 2011, Nature, 469, 212, 10.1038/nature09565
Cai Y., 2007, Bioinformatics, 23, 2760, 10.1093/bioinformatics/btm446
Weeding E., 2010, Briefings Bioinf., 11, 394, 10.1093/bib/bbq002
Chandran D., 2009, J. Biol. Eng., 3, 19, 10.1186/1754-1611-3-19
Hillson N. J., 2012, ACS Synth. Biol., 1, 14, 10.1021/sb2000116
Xia, B., Bhatia, S., Bubenheim, B., Dadgar, M., Densmore, D., and Anderson, J. C. (2011) inSynthetic Biology, Part B Computer Aided Design and DNA Assembly(Voigt, C., Ed.) Methods in Enzymology, Vol.498; pp97–135,Academic Press,New York.
Cickovski T. M., 2005, IEEE/ACM Trans. Comput. Biol. Bioinf., 2, 273, 10.1109/TCBB.2005.46
Meir E., 2002, J. Exp. Zool., 294, 216, 10.1002/jez.10187
Le Novere N., 2001, Bioinformatics, 17, 575, 10.1093/bioinformatics/17.6.575
Jang S. S., 2012, ACS Synth. Biol., 1, 365, 10.1021/sb300034m
Rudge T. J., 2012, ACS Synth. Biol., 1, 345, 10.1021/sb300031n
Myers C. J., 2009, Bioinformatics, 25, 2848, 10.1093/bioinformatics/btp457
Madsen C., 2012, IEEE Design Test Comput., 29, 32, 10.1109/MDT.2012.2187875
Hucka M., 2003, Bioinformatics, 19, 524, 10.1093/bioinformatics/btg015
Galdzicki, M. (2011) Synthetic Biology Open Language (SBOL) Version 1.0.0., DOI:1721.1/66172.
Kuwahara H., 2006, Trans. Comp. Syst. Biol., 150
Kuwahara, H. (2007) Model abstraction and temporal behavior analysis of genetic regulatory networks. Ph.D. thesis, University of Utah.
Kuwahara H., 2010, PLoS Comput. Biol., 6, e1000723, 10.1371/journal.pcbi.1000723
Kuwahara H., 2010, Stochastic Control
Madsen C., 2012, 2012 Computational Intelligence in Bioinformatics and Computational Biology
Nguyen N., 2010, J. Theor. Biol., 264, 174, 10.1016/j.jtbi.2009.10.026
Slepoy A., 2008, J. Chem. Phys., 128, 205101, 10.1063/1.2919546
JGraphX.http://www.jgraph.com/jgraphdownload.html.
GNU Trove.http://sourceforge.net/projects/trove4j/.
Jafama.http://sourceforge.net/projects/jafama/.
Flanagan, M. T.Michael Thomas Flanagan’s Java Scientific Library.http://www.ee.ucl.ac.uk/mflanaga/java/.