Draft genome sequence of a halotolerant plant growth-promoting bacterium Pseudarthrobacter oxydans NCCP-2145 isolated from rhizospheric soil of mangrove plant Avicennia marina

Electronic Journal of Biotechnology - Tập 66 - Trang 52-59 - 2023
Rabia Bushra1,2, Bushra Uzair2, Ahmad Ali3, Sadia Manzoor1,4, Saira Abbas5, Iftikhar Ahmed1
1National Culture Collection of Pakistan, Land Resources Research Institute, National Agricultural Research Centre, Islamabad, Pakistan
2Department of Biological Sciences, International Islamic University, Islamabad, Pakistan
3National Agricultural Research Centre, Islamabad, Pakistan
4Institute of Environmental Science and Engineering, National University of Sciences and Technology, Islamabad, Pakistan
5Department of Zoology, University of Sciences and Technology, Bannu, Pakistan

Tài liệu tham khảo

Tshishonga, 2020, Draft genome sequence of Pseudarthrobacter phenanthrenivorans Strain MHSD1, a bacterial endophyte isolated from the medicinal plant Pellaea calomelanos, Evol Bioinform Online, 16, 10.1177/1176934320913257 Ham, 2022, Plant growth-promoting microorganism Pseudarthrobacter sp. NIBRBAC000502770 enhances the growth and flavonoid content of Geum aleppicum, Microorganisms, 10, 1241, 10.3390/microorganisms10061241 Amaresan, 2020, 936 p Jiang, 2022, Identification and characterization of Arthrobacter nicotinovorans JI39, a novel plant growth-promoting rhizobacteria strain from Panax ginseng, Front Plant Sci, 13, 873621, 10.3389/fpls.2022.873621 Issifu, 2022, Potential of Pseudarthrobacter chlorophenolicus BF2P4-5 as a biofertilizer for the growth promotion of tomato plants, Bacteria, 1, 191, 10.3390/bacteria1040015 Carter, 2007 Pikovskaya, 1948, Mobilization of phosphorus in soil in connection with vital activity of some microbial species, Mikrobiologiya, 17, 362 Demissie, 2013, Effect of phosphate solubilizing bacteria on seed germination and seedling growth of faba bean (Vicia faba L.). Int, J Agric Res, 8, 123 Kumari, 2018, Optimization of indole-3-acetic acid production by diazotrophic B. subtilis DR2 (KP455653), isolated from rhizosphere of Eragrostis cynosuroides, Int J Pharma Med Biol Sci, 7, 20 Forhad, 2015, Probiotic properties analysis of isolated lactic acid bacteria from buffalo milk, Arch Clin Microbiol, 7, 5 Agbodjato, 2015, Characterization of potential plant growth promoting rhizobacteria isolated from Maize (Zea mays L.) in central and Northern Benin (West Africa). Appl Environ, Soil Sci, 2015, 901656 Ali, 2021, Neonatal calf diarrhea: A potent reservoir of multi-drug resistant bacteria, environmental contamination and public health hazard in Pakistan, Sci Total Environ, 799, 149450, 10.1016/j.scitotenv.2021.149450 Carrasco-Fernández, 2020, Plant growth promoting rhizobacteria from Juan Fernández archipelago improve germination rate of endangered plant Solanum fernandezianum Phil, Chilean J Agr Res, 80, 41, 10.4067/S0718-58392020000100041 Bolger, 2014, Trimmomatic: A flexible trimmer for Illumina sequence data, Bioinformatics, 30, 2114, 10.1093/bioinformatics/btu170 Bankevich, 2012, SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing, J Comput Biol, 19, 455, 10.1089/cmb.2012.0021 Parks, 2015, CheckM: Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes, Gen Res, 25, 1043, 10.1101/gr.186072.114 Yoon, 2017, Introducing EzBioCloud: A taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies, Int J Syst Evol Microbiol, 67, 1613, 10.1099/ijsem.0.001755 Meier-Kolthoff, 2019, TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy, Nat Commun, 10, 2182, 10.1038/s41467-019-10210-3 Busse, 2016, Int J Syst Evol Microbiol, 66, 19, 10.1099/ijsem.0.000702 Wu, 2022, Assessing the safety and probiotic characteristics of Bacillus coagulans 13002 based on complete genome and phenotype analysis, LWT, 155, 112847, 10.1016/j.lwt.2021.112847 Kumar, 2015, Potential of plant growth promoting traits by bacteria isolated from heavy metal contaminated soils, Bull Environ Contam Toxicol, 94, 807, 10.1007/s00128-015-1523-7 Minaxi, 2012, Characterization of multifaceted Bacillus sp. RM-2 for its use as plant growth promoting bioinoculant for crops grown in semi arid deserts, Appl Soil Ecol, 59, 124, 10.1016/j.apsoil.2011.08.001 Shiva Shanker, 2022, Potential bio-control agent Serratia sp. SCP Isolated from rhizosphere soil, Mahbubnagar, Telangana, Open Acc J Bio Sci, 4, 1913 Wash, 2022, Prevalence of antimicrobial resistance and respective genes among Bacillus spp., a versatile bio-fungicide, Int J Environ Res Public Health, 19, 14997, 10.3390/ijerph192214997 Mahdi, 2022, Antibiotic resistance in plant growth promoting bacteria: A comprehensive review and future perspectives to mitigate potential gene invasion risks, Front Microbiol, 13, 999988, 10.3389/fmicb.2022.999988 Gupta, 2022, Identification, characterization and optimization of phosphate solubilizing rhizobacteria (PSRB) from rice rhizosphere, Saudi J Biol Sci, 29, 35, 10.1016/j.sjbs.2021.09.075 Bhat, 2020, Mechanistic Insights of the interaction of Plant Growth-Promoting Rhizobacteria (PGPR) with plant roots toward enhancing plant productivity by alleviating salinity stress, Front Microbiol, 11, 1952, 10.3389/fmicb.2020.01952 Gebicka, 2019, The role of catalases in the prevention/promotion of oxidative stress, J Inorg Biochem, 197, 110699, 10.1016/j.jinorgbio.2019.110699 Pranita, 2018, Isolation, screening and identification of indole acetic acid (IAA) producing bacteria from rhizospheric soil, Int J Sci Res, 7, 1725 Kalayu, 2019, Phosphate solubilizing microorganisms: Promising approach as biofertilizers, Int J Agron, 2019, 4917256, 10.1155/2019/4917256 Mechirackal Balan, 2018, Mercury tolerance and biosorption in bacteria isolated from Ny-Ålesund, Svalbard, Arctic J Basic Microbiol, 58, 286, 10.1002/jobm.201700496 Oubohssaine, 2022, Native heavy metal-tolerant plant growth promoting rhizobacteria improves Sulla spinosissima (L.) growth in post-mining Contaminated Soils, Microorganisms, 10, 838, 10.3390/microorganisms10050838 Sajid, 2012, Impact of nitrogen and phosphorus on seed yield and yield components of Okra cultivars, J Anim Plant Sci, 22, 704 McGrath, 2013, Organophosphonates revealed: New insights into the microbial metabolism of ancient molecules, Nat Rev Microbiol, 11, 412, 10.1038/nrmicro3011 Lesmeister, 2004, Effects of supplemental yeast (Saccharomyces cerevisiae) culture on rumen development, growth characteristics, and blood parameters in neonatal dairy calves, J Dairy Sci, 87, 1832, 10.3168/jds.S0022-0302(04)73340-8 Duca, 2018, Indole acetic acid overproduction transformants of the rhizobacterium Pseudomonas sp. UW4, Antonie Van Leeuwenhoek, 111, 1645, 10.1007/s10482-018-1051-7 Spaepen, 2009, Indole-3-acetic acid-regulated genes in Rhizobium etli CNPAF512, FEMS Microbiol Lett, 291, 195, 10.1111/j.1574-6968.2008.01453.x Franche, 2009, Nitrogen-fixing bacteria associated with leguminous and non-leguminous plants, Plant Soil, 321, 35, 10.1007/s11104-008-9833-8 Gaby, 2015, Assessment of nitrogenase diversity in the environment, 209