Draft genome sequence data and analysis of Shinella sp. strain JR1-6 isolated from nitrate- and radionuclide-contaminated groundwater in Russia
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Solodov, 1998, Geochemistry of natural and contaminated subsurface waters in fissured bed rocks of the Lake Karachai area, Southern Urals, Russia, Appl. Geochem., 13, 921, 10.1016/S0883-2927(98)00025-0
Field, 2008, The minimum information about a genome sequence (MIGS) specification, Nat. Biotechnol., 26, 541, 10.1038/nbt1360
Woese, 1990, Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya, Proc. Natl. Acad. Sci. U.S.A., 87, 4576, 10.1073/pnas.87.12.4576
Garrity, 2005, Proteobacteria phyl. nov, vol. 2, 1
Garrity, 2005, Class I. Alphaproteobacteria class. nov, vol. 2, 1
Kuykendall, 2005, Order VI. Rhizobiales ord. nov, vol. 2, 324
An, 2006, Shinella granuli gen. nov., sp. nov., and proposal of the reclassification of Zoogloea ramigera ATCC 19623 as Shinella zoogloeoides sp. nov, Int. J. Syst. Evol. Microbiol., 56, 443, 10.1099/ijs.0.63942-0
Matsui, 2009, Shinella yambaruensis sp. nov., a 3-methyl-sulfolane-assimilating bacterium isolated from soil, Int. J. Syst. Evol. Microbiol., 59, 536, 10.1099/ijs.0.65510-0
Subhash, 2016, Shinella curvata sp. nov., isolated from hydrocarbon-contaminated desert sands, Int. J. Syst. Evol. Microbiol., 66, 3929, 10.1099/ijsem.0.001290
Mu, 2018, Shinella pollutisoli sp. nov., isolated from tetrabromobisphenol A-contaminated soil, Int. J. Syst. Evol. Microbiol., 68, 2602, 10.1099/ijsem.0.002883
Wilson, 2001, Preparation of genomic DNA from bacteria, Curr. Protoc. Mol. Biol., 56, 2.4.1, 10.1002/0471142727.mb0204s56
Bolger, 2014, Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, 30, 2114, 10.1093/bioinformatics/btu170
Bankevich, 2012, SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing, J. Comput. Biol., 19, 455, 10.1089/cmb.2012.0021
Tatusova, 2013
Aziz, 2008, The RAST server: rapid annotations using subsystems technology, BMC Genomics, 9, 75, 10.1186/1471-2164-9-75