Draft genome of iron-oxidizing bacterium Leptospirillum sp. YQP-1 isolated from a volcanic lake in the Wudalianchi volcano, China

Genomics Data - Tập 6 - Trang 164-165 - 2015
Lei Yan1, Shuang Zhang1, Gaobo Yu1, Yongqing Ni2, Weidong Wang1, Huixin Hu1, Peng Chen3
1College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Xinfeng Road No.5, Daqing 163319, PR China
2School of Food Sciences, Shihezi University, North 4th Road No. 280, Shihezi 832003, PR China
3School of Pharmacy, Lanzhou University, Tianshui Road No. 222, Lanzhou 730000, PR China

Tài liệu tham khảo

Hippe, 2000, Leptospirillum gen. nov. (ex Markosyan 1972), nom. rev., including Leptospirillum ferrooxidans sp. nov. (ex Markosyan 1972), nom. rev. and Leptospirillum thermoferrooxidans sp. nov. (Golovacheva et al. 1992), Int. J. Syst. Evol. Microbiol., 50, 501, 10.1099/00207713-50-2-501 Markosyan, 1972, A new iron-oxidizing bacterium: Leptospirillum ferrooxidans gen. nov sp, Biol. J. Armenia, 25, 26 Donati, 2007 Fujimura, 2012, Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the island of Miyake, Japan, J. Bacteriol., 194, 4122, 10.1128/JB.00696-12 Goltsman, 2013, New group in the Leptospirillum clade: cultivation-independent community genomics, proteomics, and transcriptomics of the new species “Leptospirillum group IV UBA BS”, Appl. Environ. Microbiol., 79, 5384, 10.1128/AEM.00202-13 Mi, 2011, Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation, J. Microbiol., 49, 890, 10.1007/s12275-011-1099-9 Cárdenas, 2014, Draft genome sequence of the iron-oxidizing acidophile Leptospirillum ferriphilum type strain DSM 14647, Genome Announc., 2, 10.1128/genomeA.01153-14 Zerbino, 2008, Velvet: algorithms for de novo short read assembly using de Bruijn graphs, Genome Res., 18, 821, 10.1101/gr.074492.107 Delcher, 2007, Identifying bacterial genes and endosymbiont DNA with Glimmer, Bioinformatics, 23, 673, 10.1093/bioinformatics/btm009 Lagesen, 2007, RNAmmer: consistent and rapid annotation of ribosomal RNA genes, Nucleic Acids Res., 35, 3100, 10.1093/nar/gkm160 Schattner, 2005, The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs, Nucleic Acids Res., 33, W686, 10.1093/nar/gki366 Tatusov, 2003, The COG database: an updated version includes eukaryotes, BMC Bioinforma., 4, 41, 10.1186/1471-2105-4-41 Kanehisa, 2004, The KEGG resource for deciphering the genome, Nucleic Acids Res., 32, D277, 10.1093/nar/gkh063