Dog introduction alters the home dust microbiota

Indoor Air - Tập 28 Số 4 - Trang 539-547 - 2018
Alexandra R. Sitarik1,2, Suzanne Havstad1,2, Albert M. Levin1, Susan V. Lynch3, Kei E. Fujimura3, Dennis R. Ownby4, Christine Cole Johnson1,2, Ganesa Wegienka1,2
1Department of Public Health Sciences, Henry Ford Health System, Detroit, MI, USA
2The in-FLAME Global Network an affiliate of the World Universities Network (WUN); West New York NJ USA
3Division of Gastroenterology, University of California, San Francisco, CA, USA
4Department of Pediatrics; Medical College of Georgia at Augusta University; Augusta GA USA

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Von Ehrenstein, 2000, Reduced risk of hay fever and asthma among children of farmers, Clin Exp Allergy, 30, 187, 10.1046/j.1365-2222.2000.00801.x

Ownby, 2002, Exposure to dogs and cats in the first year of life and risk of allergic sensitization at 6 to 7 years of age, JAMA, 288, 963, 10.1001/jama.288.8.963

Fuchs, 2012, Farming environments and childhood atopy, wheeze, lung function, and exhaled nitric oxide, J Allergy Clin Immunol, 130, 382, 10.1016/j.jaci.2012.04.049

Genuneit, 2012, Exposure to farming environments in childhood and asthma and wheeze in rural populations: a systematic review with meta-analysis, Pediatr Allergy Immunol, 23, 509, 10.1111/j.1399-3038.2012.01312.x

Campbell, 2015, Exposure to ‘farming’ and objective markers of atopy: a systematic review and meta-analysis, Clin Exp Allergy, 45, 744, 10.1111/cea.12429

Bufford, 2008, Effects of dog ownership in early childhood on immune development and atopic diseases, Clin Exp Allergy, 38, 1635, 10.1111/j.1365-2222.2008.03018.x

Chen, 2010, The role of cats and dogs in asthma and allergy-a systematic review, Int J Hyg Environ Health, 213, 1, 10.1016/j.ijheh.2009.12.003

Gern, 2004, Effects of dog ownership and genotype on immune development and atopy in infancy, J Allergy Clin Immunol, 113, 307, 10.1016/j.jaci.2003.11.017

Pelucchi, 2013, Pet exposure and risk of atopic dermatitis at the pediatric age: a meta-analysis of birth cohort studies, J Allergy Clin Immunol, 132, 616, 10.1016/j.jaci.2013.04.009

Lodrup Carlsen, 2012, Does pet ownership in infancy lead to asthma or allergy at school age? Pooled analysis of individual participant data from 11 European birth cohorts, PLoS ONE, 7, e43214, 10.1371/journal.pone.0043214

Peters, 2015, Differential factors associated with challenge-proven food allergy phenotypes in a population cohort of infants: a latent class analysis, Clin Exp Allergy, 45, 953, 10.1111/cea.12478

Pyrhönen, 2015, Dog and cat exposure and respective pet allergy in early childhood, Pediatr Allergy Immunol, 26, 247, 10.1111/pai.12369

Fujimura, 2010, Man's best friend? The effect of pet ownership on house dust microbial communities, J Allergy Clin Immunol., 126, 410, 10.1016/j.jaci.2010.05.042

Dannemiller, 2016, Influence of housing characteristics on bacterial and fungal communities in homes of asthmatic children, Indoor Air, 26, 179, 10.1111/ina.12205

Barberán, 2015, The ecology of microscopic life in household dust, Proc Biol Sci, 282, 20151139, 10.1098/rspb.2015.1139

Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat Methods, 7, 335, 10.1038/nmeth.f.303

Oksanen J Guillaume Blanchet F Kindt R vegan: Community ecology package. R package version 2.0-9 2013

Lozupone, 2005, UnifFrac: A new phylogenetic method for comparing microbial communities, Appl Environ Microbiol, 71, 8228, 10.1128/AEM.71.12.8228-8235.2005

Anderson, 2001, A new method for non-parametric multivariate analysis of variance, Austral Ecol, 26, 32

Kindt R Coe R Tree diversity analysis: A manual and software for common statistical methods for ecological and biodiversity studies

Chen, 2016, A two-part mixed-effects model for analyzing longitudinal microbiome compositional data, Bioinformatics, 32, 2611, 10.1093/bioinformatics/btw308

Benjamini, 1995, A practical and powerful approach to multiple testing, J Roy Stat Soc, 57, 289, 10.1111/j.2517-6161.1995.tb02031.x

Chen, 2012, Associating microbiome composition with environmental covariates using generalized UniFrac distances, Bioinformatics, 28, 2106, 10.1093/bioinformatics/bts342

Lax, 2017, Bacterial colonization and succession in a newly opened hospital, Sci Transl Med, 9, eeah6500, 10.1126/scitranslmed.aah6500

Dannemiller, 2017, Fungal and bacterial growth in floor dust at elevated relative humidity levels, Indoor Air, 27, 354, 10.1111/ina.12313

Gaulke, 2016, Triclosan exposure is associated with rapid restructuring of the microbiome in adult zebrafish, PLoS ONE, 11, e0154632, 10.1371/journal.pone.0154632

Carmody, 2015, Diet dominates host genotype in shaping the murine gut microbiota, Cell Host Microbe, 17, 72, 10.1016/j.chom.2014.11.010

Mayer, 2015, Rapid and profound shifts in the vaginal microbiota following antibiotic treatment for bacterial vaginosis, J Infect Dis, 212, 793, 10.1093/infdis/jiv079

Sturgeon, 2013, Metagenomic analysis of the canine oral cavity as revealed by high-throughput pyrosequencing of the 16S rRNA gene, Vet Microbiol, 162, 891, 10.1016/j.vetmic.2012.11.018

Oh, 2015, Comparison of the Oral Microbiomes of Canines and Their Owners Using Next-Generation Sequencing, PLoS ONE, 10, e0131468, 10.1371/journal.pone.0131468

Hand, 2013, Pyrosequencing the canine faecal microbiota: breadth and depth of biodiversity, PLoS ONE, 8, e53115, 10.1371/journal.pone.0053115

Middelbos, 2010, Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing, PLoS ONE, 5, e9768, 10.1371/journal.pone.0009768

Hoffman, 2014, The skin microbiome in health and allergic dogs, PLoS ONE, 9, e83197, 10.1371/journal.pone.0083197

Cuscó, 2017, Individual signatures and environmental factors shape skin microbiota in healthy dogs, Microbiome, 5, 139, 10.1186/s40168-017-0355-6

Cuscó, 2017, Individual signatures define canine skin microbiota composition and variability, Front Vet Sci, 4, 1, 10.3389/fvets.2017.00006

Bisgaard, 2007, Childhood asthma after bacterial colonization of the airway in neonates, N Engl J Med, 357, 1487, 10.1056/NEJMoa052632

Depner, 2017, Bacterial microbiota of the upper respiratory tract and childhood asthma, J Allergy Clin Immunol, 139, 826, 10.1016/j.jaci.2016.05.050

Durack, 2017, Features of the bronchial bacterial microbiome associated with atopy, asthma, and responsiveness to inhaled corticosteroid treatment, J Allergy Clin Immunol, 140, 63, 10.1016/j.jaci.2016.08.055

Arbes, 2011, Can oral pathogens influence allergic disease?, J Allergy Clin Immunol, 127, 1119, 10.1016/j.jaci.2011.03.023

Marri, 2013, Asthma-associated differences in microbial composition of induced sputum, J Allergy Clin Immunol, 131, 346, 10.1016/j.jaci.2012.11.013

Chen, 2016, Alterations in the gut microbiotas of children with food sensitization in early life, Pediatr Allergy Immunol, 27, 254, 10.1111/pai.12522

Abrahamsson, 2012, Low diversity of the gut microbiota in infants with atopic eczema, J Allergy Clin Immunol., 129, 434, 10.1016/j.jaci.2011.10.025

Penders, 2007, The role of the intestinal microbiota in the development of atopic disorders, Allergy, 62, 1223, 10.1111/j.1398-9995.2007.01462.x

Johnson, 2016, Allergies and Asthma: Do Atopic Disorders Result from Inadequate Immune Homeostasis arising from Infant Gut Dysbiosis?, Expert Rev Clin Immunol, 12, 379, 10.1586/1744666X.2016.1139452

Johnson, 2017, The infant gut bacterial microbiota and risk of pediatric asthma and allergic diseases, Transl Res, 179, 60, 10.1016/j.trsl.2016.06.010

Wegienka, 2011, Lifetime dog and cat exposure and dog- and cat-specific sensitization at age 18 years, Clin Exp Allergy, 41, 979, 10.1111/j.1365-2222.2011.03747.x

Wegienka, 2010, Indoor pet exposure and the outcomes of total IgE and sensitization at age 18 years, J Allergy Clin Immunol., 126, 274, 10.1016/j.jaci.2010.05.001

Levin, 2016, Joint effects of pregnancy, sociocultural, and environmental factors on early life gut microbiome structure and diversity, Sci Rep, 6, 31775, 10.1038/srep31775

Abrahamsson, 2014, Low gut microbiota diversity in early infancy precedes asthma at school age, Clin Exp Allergy, 44, 842, 10.1111/cea.12253

Sjögren, 2009, Altered early infant gut microbiota in children developing allergy up to 5 years of age, Clin Exp Allergy, 39, 518, 10.1111/j.1365-2222.2008.03156.x

Fujimura, 2016, Neonatal gut microbiota associates with childhood multisensitized atopy and T cell differentiation, Nat Med, 22, 1187, 10.1038/nm.4176

Penders, 2013, Establishment of the intestinal microbiota and its role for atopic dermatitis in early childhood, J Allergy Clin Immunol, 132, 601, 10.1016/j.jaci.2013.05.043

Penders, 2007, Gut microbiota composition and development of atopic manifestations in infancy: the KOALA Birth Cohort Study, Gut, 56, 661, 10.1136/gut.2006.100164

Lynch, 2014, Effects of early-life exposure to allergens and bacteria on recurrent wheeze and atopy in urban children, J Allergy Clin Immunol, 134, 593, 10.1016/j.jaci.2014.04.018