DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

2014, Mutational and fitness landscapes of an RNA virus revealed through population sequencing, Nature, 505, 686, 10.1038/nature12861

2009, Frequency spectrum neutrality tests: one for all and all for one, Genetics, 183, 249, 10.1534/genetics.109.104042

2016, Harnessing the power of RADseq for ecological and evolutionary genomics, Nat Rev Genet, 17, 81, 10.1038/nrg.2015.28

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2014, PyRAD: assembly of de novo RADseq loci for phylogenetic analyses, Bioinformatics, 30, 1844, 10.1093/bioinformatics/btu121

2014, Genome sequencing and population genomics in non-model organisms, Trends Ecol Evol, 29, 51, 10.1016/j.tree.2013.09.008

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2012, Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales, Syst Biol, 61, 717, 10.1093/sysbio/sys004

2016, PHYLUCE is a software package for the analysis of conserved genomic loci, Bioinformatics, 32, 786, 10.1093/bioinformatics/btv646

2016, DOMINO: development of informative molecular markers for phylogenetic and genome-wide population genetic studies in non-model organisms, Bioinformatics, 32, 3753, 10.1093/bioinformatics/btw534

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2013, High-throughput genomic data in systematics and phylogenetics, Annu Rev Ecol Evol Syst., 44, 99, 10.1146/annurev-ecolsys-110512-135822

2009, DnaSP v5: a software for comprehensive analysis of DNA polymorphism data, Bioinformatics, 25, 1451, 10.1093/bioinformatics/btp187

2013, Applications of next-generation sequencing to phylogeography and phylogenetics, Mol Phylogenet Evol, 66, 526, 10.1016/j.ympev.2011.12.007

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2006, Statistical tests for detecting positive selection by utilizing high-frequency variants, Genetics, 174, 1431, 10.1534/genetics.106.061432